Wall clock time and date at job start Wed Apr 1 2020 05:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47407 * 2 1 4 4 N 1.46507 * 109.47296 * 120.00193 * 2 1 3 5 5 C 1.34772 * 119.99623 * 274.99874 * 4 2 1 6 6 O 1.21632 * 120.00190 * 5.32915 * 5 4 2 7 7 C 1.47169 * 119.99926 * 185.32996 * 5 4 2 8 8 C 1.38400 * 126.88115 * 355.81320 * 7 5 4 9 9 C 1.39676 * 105.35913 * 179.91558 * 8 7 5 10 10 C 1.50703 * 126.07088 * 180.14494 * 9 8 7 11 11 C 1.52998 * 117.49663 * 343.89281 * 10 9 8 12 12 C 1.52996 * 117.49979 * 275.26964 * 10 9 8 13 13 N 1.30859 * 107.85987 * 0.35588 * 9 8 7 14 14 N 1.28445 * 110.93132 * 359.77023 * 13 9 8 15 15 C 1.46502 * 125.19594 * 180.02562 * 14 13 9 16 16 C 1.53003 * 109.46922 * 239.99922 * 2 1 3 17 17 H 1.09007 * 109.52032 * 184.92289 * 16 2 1 18 18 C 1.53038 * 109.49727 * 64.83842 * 16 2 1 19 19 C 1.53078 * 109.65568 * 178.74513 * 18 16 2 20 20 C 1.53188 * 109.29377 * 61.15796 * 19 18 16 21 21 N 1.46927 * 108.89030 * 305.57351 * 20 19 18 22 22 C 1.36939 * 120.63116 * 233.55732 * 21 20 19 23 23 H 1.08004 * 120.00112 * 141.66724 * 22 21 20 24 24 C 1.38813 * 120.00175 * 321.67452 * 22 21 20 25 25 N 1.31621 * 120.00026 * 350.27929 * 24 22 21 26 26 Si 1.86799 * 120.00122 * 170.27618 * 24 22 21 27 27 H 1.48499 * 109.46709 * 90.00329 * 26 24 22 28 28 H 1.48500 * 109.47372 * 210.00077 * 26 24 22 29 29 H 1.48498 * 109.47252 * 330.00449 * 26 24 22 30 30 C 1.46928 * 118.74033 * 53.54360 * 21 20 19 31 31 H 1.08997 * 109.46816 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46522 * 299.99822 * 1 2 3 33 33 H 1.08995 * 109.47048 * 59.99779 * 1 2 3 34 34 H 0.96994 * 120.00015 * 94.99877 * 4 2 1 35 35 H 1.08003 * 127.32078 * 0.02562 * 8 7 5 36 36 H 1.08996 * 115.54881 * 129.60084 * 10 9 8 37 37 H 1.08998 * 117.50221 * 359.97438 * 11 10 9 38 38 H 1.09004 * 117.49764 * 145.01894 * 11 10 9 39 39 H 1.09005 * 117.49895 * 214.98154 * 12 10 9 40 40 H 1.09006 * 117.49802 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.47245 * 269.59175 * 15 14 13 42 42 H 1.09001 * 109.46736 * 29.59357 * 15 14 13 43 43 H 1.09003 * 109.46869 * 149.59238 * 15 14 13 44 44 H 1.08998 * 109.45838 * 298.69975 * 18 16 2 45 45 H 1.09003 * 109.46030 * 58.67396 * 18 16 2 46 46 H 1.08993 * 109.39120 * 301.27396 * 19 18 16 47 47 H 1.09007 * 109.61552 * 181.16921 * 19 18 16 48 48 H 1.09003 * 109.59030 * 185.71652 * 20 19 18 49 49 H 1.09004 * 109.58911 * 65.42985 * 20 19 18 50 50 H 0.96996 * 120.00133 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.58960 * 66.17311 * 30 21 20 52 52 H 1.09003 * 109.58327 * 186.46264 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.7675 1.1344 2.4376 7 6 2.7471 -0.6789 3.5274 8 6 3.1507 -1.9995 3.6196 9 6 3.6522 -2.1435 4.9153 10 6 4.2218 -3.4050 5.5112 11 6 3.9260 -4.7224 4.7915 12 6 3.2377 -4.4054 6.1207 13 7 3.5354 -0.9896 5.5213 14 7 3.0118 -0.1129 4.7422 15 6 2.7403 1.2812 5.1012 16 6 2.0400 -0.7213 -1.2493 17 1 3.1265 -0.7988 -1.2071 18 6 1.6319 0.0665 -2.4963 19 6 2.1672 -0.6355 -3.7468 20 6 1.5607 -2.0393 -3.8380 21 7 1.8248 -2.7541 -2.5818 22 6 2.4282 -3.9833 -2.5921 23 1 3.1479 -4.2380 -1.8281 24 6 2.1150 -4.9020 -3.5845 25 7 1.1070 -4.6727 -4.3992 26 14 3.1242 -6.4637 -3.7637 27 1 2.5279 -7.5369 -2.9283 28 1 3.1294 -6.8892 -5.1865 29 1 4.5175 -6.2065 -3.3189 30 6 1.4295 -2.1248 -1.3143 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 2.2491 -1.6318 1.1526 35 1 3.0922 -2.7572 2.8522 36 1 5.1950 -3.3006 5.9907 37 1 3.3190 -4.6767 3.8873 38 1 4.7048 -5.4850 4.7973 39 1 3.5636 -4.9595 7.0010 40 1 2.1782 -4.1509 6.0911 41 1 1.7340 1.3612 5.5123 42 1 3.4644 1.6122 5.8457 43 1 2.8206 1.9075 4.2126 44 1 0.5447 0.1223 -2.5509 45 1 2.0449 1.0737 -2.4408 46 1 3.2526 -0.7115 -3.6825 47 1 1.8940 -0.0628 -4.6332 48 1 2.0144 -2.5802 -4.6685 49 1 0.4849 -1.9630 -3.9958 50 1 0.8884 -5.3144 -5.0929 51 1 0.3429 -2.0533 -1.2651 52 1 1.7945 -2.7234 -0.4797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025432941.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:03 Heat of formation + Delta-G solvation = 60.863222 kcal Electronic energy + Delta-G solvation = -31162.216648 eV Core-core repulsion = 27163.727757 eV Total energy + Delta-G solvation = -3998.488891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.64621 -40.95952 -39.40124 -38.09752 -36.68473 -34.80726 -33.94641 -33.03515 -32.22051 -31.42810 -29.43713 -28.21342 -27.17029 -25.75153 -24.55713 -23.96870 -23.68021 -23.13195 -22.08457 -21.35790 -20.65990 -19.91217 -18.93841 -18.49503 -17.47126 -17.31775 -16.86535 -16.79178 -16.26509 -16.05784 -15.66195 -15.58776 -15.28181 -15.19255 -15.07470 -14.72462 -14.63375 -14.02336 -13.96524 -13.80254 -13.67015 -13.47532 -13.27565 -12.98794 -12.91394 -12.74691 -12.70215 -12.31111 -12.30386 -12.09230 -12.02618 -11.97036 -11.69089 -11.54270 -11.47452 -11.33160 -11.17296 -11.07824 -11.00427 -10.51911 -10.35855 -10.04356 -9.80895 -8.46801 -7.83453 -5.41506 0.14317 1.31605 1.41579 1.48551 1.50195 1.58866 2.08003 2.14906 2.52481 2.93271 3.32340 3.32636 3.50519 3.62877 3.88422 3.94711 4.01844 4.03502 4.07808 4.13573 4.22047 4.28515 4.36927 4.37461 4.42564 4.48070 4.49693 4.59447 4.67657 4.73044 4.76349 4.85586 4.88455 4.90406 4.99319 5.06525 5.07053 5.17204 5.22908 5.24002 5.31838 5.32436 5.38740 5.39914 5.46181 5.51020 5.59416 5.66966 5.71128 5.80498 6.36027 6.48390 6.94215 7.03459 7.21609 7.88888 8.46255 9.21145 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.003254 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.146721 B = 8602.231837 C =11186.340912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.087 0.913 4 N -0.698 5.698 5 C 0.595 3.405 6 O -0.565 6.565 7 C -0.050 4.050 8 C -0.180 4.180 9 C 0.047 3.953 10 C -0.088 4.088 11 C -0.160 4.160 12 C -0.162 4.162 13 N -0.288 5.288 14 N -0.263 5.263 15 C 0.083 3.917 16 C -0.098 4.098 17 H 0.067 0.933 18 C -0.097 4.097 19 C -0.132 4.132 20 C 0.180 3.820 21 N -0.607 5.607 22 C -0.267 4.267 23 H 0.063 0.937 24 C -0.039 4.039 25 N -0.932 5.932 26 Si 0.962 3.038 27 H -0.282 1.282 28 H -0.296 1.296 29 H -0.268 1.268 30 C 0.151 3.849 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.410 0.590 35 H 0.176 0.824 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.069 0.931 48 H 0.036 0.964 49 H -0.003 1.003 50 H 0.249 0.751 51 H 0.022 0.978 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 8.337 17.656 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.059 3.941 3 H 0.105 0.895 4 N -0.349 5.349 5 C 0.381 3.619 6 O -0.445 6.445 7 C -0.179 4.179 8 C -0.209 4.209 9 C -0.108 4.108 10 C -0.108 4.108 11 C -0.197 4.197 12 C -0.200 4.200 13 N -0.122 5.122 14 N -0.051 5.051 15 C -0.056 4.056 16 C -0.118 4.118 17 H 0.086 0.914 18 C -0.135 4.135 19 C -0.171 4.171 20 C 0.054 3.946 21 N -0.330 5.330 22 C -0.398 4.398 23 H 0.081 0.919 24 C -0.236 4.236 25 N -0.577 5.577 26 Si 0.790 3.210 27 H -0.209 1.209 28 H -0.223 1.223 29 H -0.193 1.193 30 C 0.026 3.974 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.193 0.807 36 H 0.143 0.857 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.055 0.945 49 H 0.015 0.985 50 H 0.058 0.942 51 H 0.039 0.961 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.762 9.792 18.603 21.357 hybrid contribution 0.114 -1.747 -1.287 2.173 sum 3.875 8.045 17.316 19.483 Atomic orbital electron populations 1.22213 0.94729 1.02455 1.02427 1.20952 0.94549 0.96365 0.82253 0.89461 1.45840 1.65711 1.14635 1.08680 1.16938 0.77793 0.85147 0.82060 1.90748 1.51369 1.18080 1.84347 1.21450 1.11347 0.94934 0.90170 1.22368 1.04572 0.94924 0.99078 1.21416 1.03423 0.93449 0.92521 1.20138 1.00284 0.84899 1.05450 1.23117 1.03717 0.96445 0.96415 1.23042 0.97695 1.01260 0.98032 1.73061 1.17101 0.99913 1.22112 1.45826 1.41441 1.11123 1.06698 1.22497 1.04240 0.74289 1.04531 1.21748 1.00306 0.96246 0.93542 0.91415 1.21407 1.00929 0.98194 0.92936 1.22023 0.99956 0.96928 0.98153 1.20504 0.95173 0.90203 0.88733 1.44129 1.70072 1.17573 1.01255 1.19397 1.16901 0.90927 1.12574 0.91921 1.26036 0.97332 1.00314 0.99900 1.70135 1.29211 1.37145 1.21167 0.85370 0.79062 0.80120 0.76451 1.20868 1.22260 1.19289 1.21130 0.96099 0.91813 0.88402 0.92309 0.92838 0.90382 0.75294 0.80700 0.85660 0.88516 0.86389 0.86560 0.89681 0.88866 0.87020 0.87814 0.91771 0.90550 0.93211 0.91242 0.94526 0.98492 0.94179 0.96064 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 8.76 71.98 0.63 -3.42 16 2 C 0.16 4.19 2.31 44.99 0.10 4.29 16 3 H 0.09 2.26 7.66 -2.39 -0.02 2.24 16 4 N -0.70 -17.35 5.00 -446.04 -2.23 -19.58 16 5 C 0.59 15.90 7.75 86.59 0.67 16.57 16 6 O -0.57 -17.03 14.41 -4.13 -0.06 -17.09 16 7 C -0.05 -1.29 6.96 40.79 0.28 -1.01 16 8 C -0.18 -4.21 9.79 22.66 0.22 -3.99 16 9 C 0.05 1.12 6.85 43.05 0.30 1.41 16 10 C -0.09 -1.60 6.33 -11.54 -0.07 -1.67 16 11 C -0.16 -2.42 10.02 30.59 0.31 -2.12 16 12 C -0.16 -2.51 10.23 30.59 0.31 -2.19 16 13 N -0.29 -7.39 11.90 -47.49 -0.57 -7.95 16 14 N -0.26 -6.48 3.75 -356.00 -1.33 -7.81 16 15 C 0.08 1.51 10.77 127.77 1.38 2.88 16 16 C -0.10 -2.91 2.28 -10.72 -0.02 -2.93 16 17 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 18 C -0.10 -2.80 4.88 30.63 0.15 -2.65 16 19 C -0.13 -4.60 6.09 30.68 0.19 -4.41 16 20 C 0.18 8.32 5.22 86.36 0.45 8.77 16 21 N -0.61 -28.85 2.94 -699.07 -2.06 -30.90 16 22 C -0.27 -14.07 9.49 84.03 0.80 -13.28 16 23 H 0.06 3.19 7.85 -2.91 -0.02 3.17 16 24 C -0.04 -2.13 5.03 84.86 0.43 -1.70 16 25 N -0.93 -54.08 11.55 21.65 0.25 -53.83 16 26 Si 0.96 43.42 29.56 68.60 2.03 45.45 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 28 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 29 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 30 C 0.15 5.64 5.26 86.36 0.45 6.09 16 31 H 0.06 1.59 6.23 -2.39 -0.01 1.57 16 32 H 0.05 1.37 8.08 -2.38 -0.02 1.35 16 33 H 0.08 1.83 6.59 -2.39 -0.02 1.82 16 34 H 0.41 9.55 6.30 -92.71 -0.58 8.97 16 35 H 0.18 3.41 7.00 -2.91 -0.02 3.39 16 36 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.10 1.56 7.21 -2.39 -0.02 1.55 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.10 2.01 6.42 -2.39 -0.02 2.00 16 44 H 0.06 1.84 6.62 -2.39 -0.02 1.82 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 48 H 0.04 1.93 6.64 -2.39 -0.02 1.92 16 49 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 50 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 51 H 0.02 0.83 6.06 -2.39 -0.01 0.82 16 52 H 0.05 1.87 6.75 -2.39 -0.02 1.85 16 Total: -1.00 -66.92 405.76 2.95 -63.98 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.35 Total: 27.09 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 6.57 Total: 0.65 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -5.94 Total: -120.08 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.06 Total: -17.09 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -66.92 2.95 -63.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025432941.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.840 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds