Wall clock time and date at job start Wed Apr 1 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47244 * 2 1 4 4 N 1.46497 * 109.47024 * 239.99627 * 2 1 3 5 5 C 1.34780 * 119.99893 * 85.00156 * 4 2 1 6 6 O 1.21636 * 119.99700 * 355.34401 * 5 4 2 7 7 C 1.47158 * 120.00367 * 175.34066 * 5 4 2 8 8 C 1.38410 * 126.88338 * 97.82192 * 7 5 4 9 9 C 1.50694 * 127.31974 * 359.97438 * 8 7 5 10 10 C 1.53004 * 117.49873 * 188.62237 * 9 8 7 11 11 C 1.52999 * 60.00058 * 252.51216 * 10 9 8 12 12 C 1.39675 * 105.35577 * 179.97438 * 8 7 5 13 13 N 1.30866 * 107.86728 * 0.35010 * 12 8 7 14 14 N 1.28445 * 110.92257 * 359.77563 * 13 12 8 15 15 C 1.46498 * 125.18813 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47034 * 119.99985 * 2 1 3 17 17 H 1.09006 * 109.50093 * 180.02562 * 16 2 1 18 18 C 1.53042 * 109.52514 * 300.14614 * 16 2 1 19 19 C 1.53044 * 109.53780 * 181.33281 * 18 16 2 20 20 C 1.53612 * 109.24242 * 298.51119 * 19 18 16 21 21 N 1.46928 * 108.54512 * 54.85784 * 20 19 18 22 22 C 1.36938 * 120.63121 * 126.37101 * 21 20 19 23 23 H 1.07997 * 119.99674 * 216.85236 * 22 21 20 24 24 C 1.38808 * 120.00448 * 36.84503 * 22 21 20 25 25 N 1.31627 * 119.99835 * 23.91501 * 24 22 21 26 26 Si 1.86802 * 120.00417 * 203.63928 * 24 22 21 27 27 H 1.48499 * 109.46869 * 60.00025 * 26 24 22 28 28 H 1.48498 * 109.47045 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.46820 * 300.00231 * 26 24 22 30 30 C 1.46924 * 118.73773 * 306.09191 * 21 20 19 31 31 H 1.09010 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47130 * 300.00015 * 1 2 3 33 33 H 1.08998 * 109.47288 * 60.00150 * 1 2 3 34 34 H 0.97001 * 120.00285 * 264.99967 * 4 2 1 35 35 H 1.08997 * 115.55214 * 334.32845 * 9 8 7 36 36 H 1.09005 * 117.49376 * 0.02562 * 10 9 8 37 37 H 1.08998 * 117.49885 * 145.02118 * 10 9 8 38 38 H 1.08999 * 117.49898 * 252.51374 * 11 10 9 39 39 H 1.08997 * 117.50057 * 107.49104 * 11 10 9 40 40 H 1.07998 * 126.06656 * 180.10727 * 12 8 7 41 41 H 1.08996 * 109.47659 * 274.44849 * 15 14 13 42 42 H 1.08992 * 109.47261 * 34.45183 * 15 14 13 43 43 H 1.09000 * 109.47013 * 154.45113 * 15 14 13 44 44 H 1.09006 * 109.45930 * 301.35285 * 18 16 2 45 45 H 1.08999 * 109.45780 * 61.31559 * 18 16 2 46 46 H 1.08998 * 109.49608 * 58.58945 * 19 18 16 47 47 H 1.09001 * 109.49699 * 178.64513 * 19 18 16 48 48 H 1.08996 * 109.74219 * 295.11820 * 20 19 18 49 49 H 1.09006 * 109.66578 * 174.55307 * 20 19 18 50 50 H 0.97000 * 119.99522 * 7.40202 * 25 24 22 51 51 H 1.09000 * 109.58638 * 173.65060 * 30 21 20 52 52 H 1.09004 * 109.58813 * 294.07312 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.7786 1.1383 -2.4341 7 6 2.7334 -0.6835 -3.5316 8 6 2.0489 -1.2711 -4.5814 9 6 0.5556 -1.3638 -4.7604 10 6 0.0339 -2.2379 -5.9027 11 6 -0.0483 -0.7137 -6.0068 12 6 3.0367 -1.7597 -5.4395 13 7 4.2012 -1.4782 -4.9130 14 7 4.0621 -0.8512 -3.8006 15 6 5.1608 -0.3863 -2.9504 16 6 2.0400 -0.7212 1.2492 17 1 3.1300 -0.7211 1.2500 18 6 1.5275 -0.0029 2.4996 19 6 2.0646 -0.7044 3.7493 20 6 1.5497 -2.1514 3.7782 21 7 1.9188 -2.8041 2.5147 22 6 2.6071 -3.9879 2.5159 23 1 3.3591 -4.1759 1.7639 24 6 2.3385 -4.9460 3.4837 25 7 1.1686 -4.9626 4.0865 26 14 3.6346 -6.2168 3.9250 27 1 4.8506 -5.5292 4.4288 28 1 3.1040 -7.1199 4.9777 29 1 3.9792 -7.0118 2.7190 30 6 1.5297 -2.1657 1.2499 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 -0.0309 -1.3325 -3.8421 36 1 0.7710 -2.7461 -6.5245 37 1 -0.8958 -2.7818 -5.7361 38 1 -1.0321 -0.2548 -5.9086 39 1 0.6347 -0.2188 -6.6973 40 1 2.8692 -2.2811 -6.3703 41 1 5.4755 -1.1938 -2.2893 42 1 5.9998 -0.0808 -3.5755 43 1 4.8247 0.4616 -2.3536 44 1 1.8689 1.0323 2.4893 45 1 0.4378 -0.0257 2.5105 46 1 3.1544 -0.7038 3.7267 47 1 1.7189 -0.1780 4.6389 48 1 0.4653 -2.1542 3.8879 49 1 2.0047 -2.6860 4.6122 50 1 0.4577 -4.3770 3.7818 51 1 1.9714 -2.7097 0.4150 52 1 0.4436 -2.1696 1.1575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025440145.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:17 Heat of formation + Delta-G solvation = 76.974998 kcal Electronic energy + Delta-G solvation = -31621.139238 eV Core-core repulsion = 27623.349007 eV Total energy + Delta-G solvation = -3997.790232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.70297 -39.87131 -38.14219 -37.41752 -35.40902 -33.41458 -33.22041 -31.67398 -30.41703 -30.38515 -28.24493 -27.30979 -25.14346 -24.67775 -23.74581 -22.85210 -22.49987 -22.10128 -20.58509 -20.30993 -19.84703 -18.81452 -18.10136 -17.27994 -16.57917 -16.02505 -15.87712 -15.68879 -14.92375 -14.74235 -14.51597 -14.43181 -14.26997 -13.89079 -13.64943 -13.53624 -13.40744 -13.11477 -13.00203 -12.85443 -12.57300 -12.27274 -12.17885 -12.09116 -11.71450 -11.69972 -11.18495 -11.12236 -10.94689 -10.85790 -10.66035 -10.49859 -10.48464 -10.30429 -10.19309 -10.11288 -9.95852 -9.85338 -9.32072 -9.28739 -9.13517 -8.68598 -8.41409 -6.88737 -6.08523 -3.40742 1.46620 1.96997 2.43692 2.61689 3.11386 3.44572 3.47155 3.65517 3.80300 4.17399 4.45597 4.52509 4.63349 4.70505 4.84494 4.86452 4.88141 5.01831 5.06354 5.07281 5.13135 5.24101 5.27180 5.33216 5.41499 5.47417 5.52026 5.54639 5.66120 5.69440 5.75855 5.82607 5.94916 5.96329 6.03114 6.04204 6.06778 6.15739 6.30266 6.31303 6.40949 6.45055 6.45595 6.55296 6.60426 6.63266 6.76966 7.00913 7.13088 7.36333 7.88381 7.99351 8.01299 8.54058 9.06527 9.76107 10.25604 11.13384 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.003061 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.000335 B = 9146.445771 C = 9866.840495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.083 0.917 4 N -0.707 5.707 5 C 0.593 3.407 6 O -0.524 6.524 7 C -0.024 4.024 8 C -0.122 4.122 9 C -0.082 4.082 10 C -0.169 4.169 11 C -0.168 4.168 12 C 0.007 3.993 13 N -0.282 5.282 14 N -0.272 5.272 15 C 0.086 3.914 16 C -0.112 4.112 17 H 0.072 0.928 18 C -0.101 4.101 19 C -0.137 4.137 20 C 0.154 3.846 21 N -0.595 5.595 22 C -0.357 4.357 23 H 0.048 0.952 24 C -0.015 4.015 25 N -0.907 5.907 26 Si 1.061 2.939 27 H -0.292 1.292 28 H -0.285 1.285 29 H -0.292 1.292 30 C 0.152 3.848 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.406 0.594 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.183 0.817 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.018 0.982 49 H 0.069 0.931 50 H 0.269 0.731 51 H 0.048 0.952 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 9.949 -15.028 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.101 0.899 4 N -0.359 5.359 5 C 0.375 3.625 6 O -0.398 6.398 7 C -0.153 4.153 8 C -0.133 4.133 9 C -0.101 4.101 10 C -0.206 4.206 11 C -0.205 4.205 12 C -0.171 4.171 13 N -0.112 5.112 14 N -0.060 5.060 15 C -0.054 4.054 16 C -0.133 4.133 17 H 0.090 0.910 18 C -0.139 4.139 19 C -0.176 4.176 20 C 0.028 3.972 21 N -0.318 5.318 22 C -0.486 4.486 23 H 0.066 0.934 24 C -0.219 4.219 25 N -0.545 5.545 26 Si 0.891 3.109 27 H -0.219 1.219 28 H -0.210 1.210 29 H -0.219 1.219 30 C 0.026 3.974 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.242 0.758 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.200 0.800 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.036 0.964 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.066 0.934 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.774 9.456 -14.073 17.180 hybrid contribution -0.964 0.870 -0.939 1.602 sum 1.810 10.326 -15.012 18.310 Atomic orbital electron populations 1.22268 0.95107 1.02856 1.02197 1.21108 0.94568 0.96534 0.83209 0.89887 1.46278 1.65890 1.14617 1.09066 1.16996 0.78675 0.85461 0.81371 1.90834 1.49209 1.16563 1.83212 1.21281 0.85223 1.08742 1.00012 1.19758 0.94578 1.04038 0.94915 1.20160 0.89638 1.06026 0.94321 1.22986 1.02980 0.93432 1.01234 1.22997 1.02246 0.95440 0.99827 1.23329 0.87298 1.04803 1.01643 1.73147 1.26767 1.13277 0.98037 1.45505 1.04703 1.39854 1.15897 1.22212 0.88000 1.01333 0.93887 1.21946 1.00763 0.98170 0.92420 0.90969 1.21428 1.00405 0.97613 0.94418 1.22132 1.00723 0.98720 0.96039 1.20994 0.96270 0.89841 0.90056 1.44016 1.65919 1.22916 0.98976 1.19831 1.16094 0.93666 1.19013 0.93381 1.25962 0.99796 0.98095 0.98007 1.70767 1.01609 1.38149 1.43998 0.83594 0.75052 0.75948 0.76320 1.21947 1.21027 1.21881 1.21005 0.96326 0.89826 0.90275 0.91596 0.91224 0.92530 0.75768 0.87181 0.88472 0.88329 0.88507 0.88649 0.79967 0.89129 0.88296 0.88920 0.93201 0.92044 0.92436 0.93002 0.96442 0.91281 0.92039 0.93374 0.95881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.79 37.16 0.33 -1.87 16 2 C 0.15 2.04 2.37 -67.93 -0.16 1.88 16 3 H 0.08 1.16 7.65 -51.93 -0.40 0.76 16 4 N -0.71 -9.33 4.99 -54.97 -0.27 -9.61 16 5 C 0.59 8.41 6.80 -12.64 -0.09 8.32 16 6 O -0.52 -8.89 16.79 5.25 0.09 -8.80 16 7 C -0.02 -0.32 6.71 -82.06 -0.55 -0.87 16 8 C -0.12 -1.53 5.94 -104.03 -0.62 -2.15 16 9 C -0.08 -0.91 6.12 -91.77 -0.56 -1.47 16 10 C -0.17 -1.45 10.05 -26.73 -0.27 -1.72 16 11 C -0.17 -1.55 10.23 -26.73 -0.27 -1.83 16 12 C 0.01 0.08 11.41 -17.43 -0.20 -0.12 16 13 N -0.28 -3.66 11.90 30.59 0.36 -3.29 16 14 N -0.27 -3.38 3.75 -63.89 -0.24 -3.62 16 15 C 0.09 0.77 11.21 59.85 0.67 1.45 16 16 C -0.11 -1.74 2.33 -90.50 -0.21 -1.95 16 17 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 18 C -0.10 -1.52 4.77 -26.69 -0.13 -1.65 16 19 C -0.14 -2.40 6.10 -26.39 -0.16 -2.56 16 20 C 0.15 3.41 4.89 -3.49 -0.02 3.39 16 21 N -0.59 -13.99 2.70 -172.06 -0.47 -14.45 16 22 C -0.36 -9.53 9.38 -15.06 -0.14 -9.67 16 23 H 0.05 1.30 7.93 -52.49 -0.42 0.88 16 24 C -0.01 -0.40 4.68 -17.43 -0.08 -0.48 16 25 N -0.91 -26.42 12.75 55.49 0.71 -25.72 16 26 Si 1.06 24.49 29.98 -169.99 -5.10 19.39 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 30 C 0.15 2.90 5.29 -3.71 -0.02 2.88 16 31 H 0.07 0.91 6.32 -51.92 -0.33 0.58 16 32 H 0.07 0.86 6.46 -51.93 -0.34 0.53 16 33 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.41 5.33 6.95 -40.82 -0.28 5.04 16 35 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.10 0.73 7.12 -51.93 -0.37 0.36 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.18 1.58 7.34 -52.49 -0.39 1.20 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.80 7.67 -51.93 -0.40 0.40 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.92 6.50 -51.93 -0.34 0.58 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 49 H 0.07 1.72 6.94 -51.93 -0.36 1.36 16 50 H 0.27 7.92 7.16 -40.82 -0.29 7.63 16 51 H 0.05 0.92 6.52 -51.93 -0.34 0.58 16 52 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 LS Contribution 409.46 15.07 6.17 6.17 Total: -1.00 -32.18 409.46 -9.65 -41.83 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.42 Total: 6.53 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.48 Total: -8.42 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.09 Total: -56.69 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.10 Total: 19.39 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.18 -9.65 -41.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440145.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.804 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds