Wall clock time and date at job start Wed Apr 1 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47244 * 2 1 4 4 N 1.46497 * 109.47024 * 239.99627 * 2 1 3 5 5 C 1.34780 * 119.99893 * 85.00156 * 4 2 1 6 6 O 1.21636 * 119.99700 * 355.34401 * 5 4 2 7 7 C 1.47158 * 120.00367 * 175.34066 * 5 4 2 8 8 C 1.38410 * 126.88338 * 97.82192 * 7 5 4 9 9 C 1.50694 * 127.31974 * 359.97438 * 8 7 5 10 10 C 1.53004 * 117.49873 * 188.62237 * 9 8 7 11 11 C 1.52999 * 60.00058 * 252.51216 * 10 9 8 12 12 C 1.39675 * 105.35577 * 179.97438 * 8 7 5 13 13 N 1.30866 * 107.86728 * 0.35010 * 12 8 7 14 14 N 1.28445 * 110.92257 * 359.77563 * 13 12 8 15 15 C 1.46498 * 125.18813 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47034 * 119.99985 * 2 1 3 17 17 H 1.09006 * 109.50093 * 180.02562 * 16 2 1 18 18 C 1.53042 * 109.52514 * 300.14614 * 16 2 1 19 19 C 1.53044 * 109.53780 * 181.33281 * 18 16 2 20 20 C 1.53612 * 109.24242 * 298.51119 * 19 18 16 21 21 N 1.46928 * 108.54512 * 54.85784 * 20 19 18 22 22 C 1.36938 * 120.63121 * 126.37101 * 21 20 19 23 23 H 1.07997 * 119.99674 * 216.85236 * 22 21 20 24 24 C 1.38808 * 120.00448 * 36.84503 * 22 21 20 25 25 N 1.31627 * 119.99835 * 23.91501 * 24 22 21 26 26 Si 1.86802 * 120.00417 * 203.63928 * 24 22 21 27 27 H 1.48499 * 109.46869 * 60.00025 * 26 24 22 28 28 H 1.48498 * 109.47045 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.46820 * 300.00231 * 26 24 22 30 30 C 1.46924 * 118.73773 * 306.09191 * 21 20 19 31 31 H 1.09010 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47130 * 300.00015 * 1 2 3 33 33 H 1.08998 * 109.47288 * 60.00150 * 1 2 3 34 34 H 0.97001 * 120.00285 * 264.99967 * 4 2 1 35 35 H 1.08997 * 115.55214 * 334.32845 * 9 8 7 36 36 H 1.09005 * 117.49376 * 0.02562 * 10 9 8 37 37 H 1.08998 * 117.49885 * 145.02118 * 10 9 8 38 38 H 1.08999 * 117.49898 * 252.51374 * 11 10 9 39 39 H 1.08997 * 117.50057 * 107.49104 * 11 10 9 40 40 H 1.07998 * 126.06656 * 180.10727 * 12 8 7 41 41 H 1.08996 * 109.47659 * 274.44849 * 15 14 13 42 42 H 1.08992 * 109.47261 * 34.45183 * 15 14 13 43 43 H 1.09000 * 109.47013 * 154.45113 * 15 14 13 44 44 H 1.09006 * 109.45930 * 301.35285 * 18 16 2 45 45 H 1.08999 * 109.45780 * 61.31559 * 18 16 2 46 46 H 1.08998 * 109.49608 * 58.58945 * 19 18 16 47 47 H 1.09001 * 109.49699 * 178.64513 * 19 18 16 48 48 H 1.08996 * 109.74219 * 295.11820 * 20 19 18 49 49 H 1.09006 * 109.66578 * 174.55307 * 20 19 18 50 50 H 0.97000 * 119.99522 * 7.40202 * 25 24 22 51 51 H 1.09000 * 109.58638 * 173.65060 * 30 21 20 52 52 H 1.09004 * 109.58813 * 294.07312 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.7786 1.1383 -2.4341 7 6 2.7334 -0.6835 -3.5316 8 6 2.0489 -1.2711 -4.5814 9 6 0.5556 -1.3638 -4.7604 10 6 0.0339 -2.2379 -5.9027 11 6 -0.0483 -0.7137 -6.0068 12 6 3.0367 -1.7597 -5.4395 13 7 4.2012 -1.4782 -4.9130 14 7 4.0621 -0.8512 -3.8006 15 6 5.1608 -0.3863 -2.9504 16 6 2.0400 -0.7212 1.2492 17 1 3.1300 -0.7211 1.2500 18 6 1.5275 -0.0029 2.4996 19 6 2.0646 -0.7044 3.7493 20 6 1.5497 -2.1514 3.7782 21 7 1.9188 -2.8041 2.5147 22 6 2.6071 -3.9879 2.5159 23 1 3.3591 -4.1759 1.7639 24 6 2.3385 -4.9460 3.4837 25 7 1.1686 -4.9626 4.0865 26 14 3.6346 -6.2168 3.9250 27 1 4.8506 -5.5292 4.4288 28 1 3.1040 -7.1199 4.9777 29 1 3.9792 -7.0118 2.7190 30 6 1.5297 -2.1657 1.2499 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1525 35 1 -0.0309 -1.3325 -3.8421 36 1 0.7710 -2.7461 -6.5245 37 1 -0.8958 -2.7818 -5.7361 38 1 -1.0321 -0.2548 -5.9086 39 1 0.6347 -0.2188 -6.6973 40 1 2.8692 -2.2811 -6.3703 41 1 5.4755 -1.1938 -2.2893 42 1 5.9998 -0.0808 -3.5755 43 1 4.8247 0.4616 -2.3536 44 1 1.8689 1.0323 2.4893 45 1 0.4378 -0.0257 2.5105 46 1 3.1544 -0.7038 3.7267 47 1 1.7189 -0.1780 4.6389 48 1 0.4653 -2.1542 3.8879 49 1 2.0047 -2.6860 4.6122 50 1 0.4577 -4.3770 3.7818 51 1 1.9714 -2.7097 0.4150 52 1 0.4436 -2.1696 1.1575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025440145.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:15 Heat of formation + Delta-G solvation = 58.492420 kcal Electronic energy + Delta-G solvation = -31621.940703 eV Core-core repulsion = 27623.349007 eV Total energy + Delta-G solvation = -3998.591696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.62153 -41.07451 -39.56448 -38.18311 -36.89011 -34.90028 -34.16940 -32.94009 -32.18691 -31.50694 -29.57306 -28.10668 -27.00928 -25.85599 -24.74771 -24.11685 -23.64966 -23.17971 -21.98996 -21.25192 -20.85111 -20.20280 -19.34305 -18.97859 -17.61548 -17.03336 -16.86958 -16.56782 -16.28496 -16.24687 -15.77310 -15.61201 -15.44929 -15.34749 -15.15594 -15.01056 -14.44905 -14.36593 -13.89754 -13.85148 -13.74637 -13.67315 -13.59824 -13.00790 -12.97884 -12.81580 -12.61618 -12.35366 -12.15497 -12.04871 -11.94108 -11.90969 -11.75420 -11.70395 -11.61741 -11.49531 -11.28545 -11.20532 -11.05733 -10.45513 -10.30186 -10.24962 -9.56923 -8.88135 -8.16817 -5.50970 0.49985 0.98269 1.54715 1.57527 1.62428 1.63637 1.82756 2.07746 2.63881 3.04559 3.20405 3.36256 3.40201 3.50031 3.81794 3.85776 3.88587 3.93893 3.94871 4.09186 4.19174 4.22027 4.24435 4.25315 4.30756 4.34262 4.44856 4.49165 4.52364 4.55854 4.72229 4.72901 4.80201 4.85284 4.86483 4.92108 5.02456 5.04019 5.09649 5.15085 5.22688 5.23001 5.25625 5.28543 5.34119 5.37340 5.44373 5.56221 5.68088 5.89863 6.23912 6.40742 6.87091 6.96677 7.10152 7.75979 8.25521 8.98130 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.003061 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.000335 B = 9146.445771 C = 9866.840495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 H 0.090 0.910 4 N -0.700 5.700 5 C 0.603 3.397 6 O -0.553 6.553 7 C -0.049 4.049 8 C -0.126 4.126 9 C -0.108 4.108 10 C -0.152 4.152 11 C -0.163 4.163 12 C 0.004 3.996 13 N -0.296 5.296 14 N -0.274 5.274 15 C 0.078 3.922 16 C -0.095 4.095 17 H 0.067 0.933 18 C -0.098 4.098 19 C -0.126 4.126 20 C 0.158 3.842 21 N -0.613 5.613 22 C -0.359 4.359 23 H 0.043 0.957 24 C -0.065 4.065 25 N -0.936 5.936 26 Si 1.109 2.891 27 H -0.279 1.279 28 H -0.293 1.293 29 H -0.276 1.276 30 C 0.153 3.847 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.407 0.593 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.210 0.790 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.004 0.996 49 H 0.032 0.968 50 H 0.253 0.747 51 H 0.043 0.957 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 10.816 -16.317 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.108 0.892 4 N -0.351 5.351 5 C 0.387 3.613 6 O -0.430 6.430 7 C -0.178 4.178 8 C -0.136 4.136 9 C -0.128 4.128 10 C -0.189 4.189 11 C -0.201 4.201 12 C -0.173 4.173 13 N -0.127 5.127 14 N -0.063 5.063 15 C -0.061 4.061 16 C -0.116 4.116 17 H 0.086 0.914 18 C -0.136 4.136 19 C -0.165 4.165 20 C 0.032 3.968 21 N -0.337 5.337 22 C -0.489 4.489 23 H 0.061 0.939 24 C -0.263 4.263 25 N -0.576 5.576 26 Si 0.933 3.067 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.202 1.202 30 C 0.027 3.973 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.243 0.757 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.227 0.773 41 H 0.117 0.883 42 H 0.135 0.865 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.022 0.978 49 H 0.050 0.950 50 H 0.063 0.937 51 H 0.062 0.938 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.487 10.344 -15.379 18.859 hybrid contribution -1.210 0.609 -0.587 1.477 sum 2.277 10.953 -15.966 19.495 Atomic orbital electron populations 1.22219 0.94624 1.02343 1.02713 1.21002 0.94778 0.96412 0.82324 0.89193 1.46225 1.65471 1.14525 1.08911 1.17003 0.77933 0.84894 0.81518 1.90811 1.50661 1.17826 1.83718 1.21302 0.86113 1.10034 1.00319 1.20055 0.95457 1.03446 0.94691 1.20190 0.88865 1.08937 0.94775 1.23099 1.03404 0.93118 0.99255 1.23054 1.02354 0.96243 0.98408 1.23793 0.86621 1.04504 1.02370 1.73128 1.27441 1.13728 0.98392 1.45777 1.04883 1.39626 1.15973 1.22457 0.87807 1.01704 0.94145 1.21717 1.00292 0.95740 0.93833 0.91430 1.21438 1.00720 0.98844 0.92554 1.21990 1.00293 0.95694 0.98504 1.20886 0.95221 0.92320 0.88367 1.44248 1.66071 1.22631 1.00796 1.20066 1.15671 0.94644 1.18477 0.93940 1.27216 1.00665 0.99998 0.98442 1.70892 1.02247 1.39139 1.45308 0.82955 0.73284 0.74059 0.76383 1.20517 1.21878 1.20175 1.21088 0.96169 0.91797 0.88212 0.92574 0.89973 0.92751 0.75683 0.88544 0.87101 0.87321 0.87819 0.88487 0.77299 0.88263 0.86513 0.88767 0.89976 0.91498 0.92921 0.90703 0.97772 0.94954 0.93709 0.93829 0.96161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 8.79 71.98 0.63 -3.40 16 2 C 0.16 4.07 2.37 44.99 0.11 4.18 16 3 H 0.09 2.29 7.65 -2.39 -0.02 2.27 16 4 N -0.70 -18.00 4.99 -446.07 -2.23 -20.23 16 5 C 0.60 16.81 6.80 86.58 0.59 17.40 16 6 O -0.55 -18.49 16.79 -4.15 -0.07 -18.56 16 7 C -0.05 -1.30 6.71 40.79 0.27 -1.02 16 8 C -0.13 -3.06 5.94 -19.48 -0.12 -3.17 16 9 C -0.11 -2.30 6.12 -11.54 -0.07 -2.37 16 10 C -0.15 -2.30 10.05 30.60 0.31 -1.99 16 11 C -0.16 -2.78 10.23 30.60 0.31 -2.46 16 12 C 0.00 0.08 11.41 85.18 0.97 1.06 16 13 N -0.30 -7.33 11.90 -57.14 -0.68 -8.01 16 14 N -0.27 -6.59 3.75 -356.04 -1.33 -7.93 16 15 C 0.08 1.32 11.21 127.77 1.43 2.76 16 16 C -0.10 -2.80 2.33 -10.72 -0.02 -2.83 16 17 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 18 C -0.10 -2.71 4.77 30.62 0.15 -2.56 16 19 C -0.13 -4.22 6.10 30.81 0.19 -4.03 16 20 C 0.16 7.07 4.89 86.50 0.42 7.50 16 21 N -0.61 -29.18 2.70 -698.27 -1.89 -31.07 16 22 C -0.36 -19.41 9.38 84.03 0.79 -18.62 16 23 H 0.04 2.31 7.93 -2.91 -0.02 2.29 16 24 C -0.07 -3.62 4.68 84.86 0.40 -3.22 16 25 N -0.94 -56.06 12.75 21.65 0.28 -55.78 16 26 Si 1.11 49.79 29.98 68.60 2.06 51.85 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 29 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 30 C 0.15 5.79 5.29 86.36 0.46 6.25 16 31 H 0.06 1.51 6.32 -2.38 -0.02 1.50 16 32 H 0.08 1.85 6.46 -2.39 -0.02 1.83 16 33 H 0.05 1.40 8.11 -2.39 -0.02 1.38 16 34 H 0.41 10.53 6.95 -92.71 -0.64 9.88 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.11 1.37 7.12 -2.38 -0.02 1.35 16 37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.21 3.13 7.34 -2.91 -0.02 3.11 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.54 7.67 -2.39 -0.02 1.53 16 44 H 0.08 1.84 8.14 -2.38 -0.02 1.83 16 45 H 0.07 1.82 6.50 -2.39 -0.02 1.81 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.00 0.20 7.92 -2.39 -0.02 0.18 16 49 H 0.03 1.66 6.94 -2.38 -0.02 1.64 16 50 H 0.25 15.52 7.16 -92.71 -0.66 14.86 16 51 H 0.04 1.66 6.52 -2.39 -0.02 1.65 16 52 H 0.02 0.80 6.18 -2.38 -0.01 0.78 16 Total: -1.00 -70.63 409.46 3.34 -67.29 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.39 Total: 28.99 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 6.81 Total: -6.55 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.85 Total: -123.02 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.07 Total: -18.56 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.06 Total: 51.85 kcal Total: -70.63 3.34 -67.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440145.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.781 kcal (2) G-P(sol) polarization free energy of solvation -70.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds