Wall clock time and date at job start Wed Apr 1 2020 05:20:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08996 * 109.47244 * 2 1
4 4 N 1.46497 * 109.47024 * 239.99627 * 2 1 3
5 5 C 1.34780 * 119.99893 * 85.00156 * 4 2 1
6 6 O 1.21636 * 119.99700 * 355.34401 * 5 4 2
7 7 C 1.47158 * 120.00367 * 175.34066 * 5 4 2
8 8 C 1.38410 * 126.88338 * 97.82192 * 7 5 4
9 9 C 1.50694 * 127.31974 * 359.97438 * 8 7 5
10 10 C 1.53004 * 117.49873 * 188.62237 * 9 8 7
11 11 C 1.52999 * 60.00058 * 252.51216 * 10 9 8
12 12 C 1.39675 * 105.35577 * 179.97438 * 8 7 5
13 13 N 1.30866 * 107.86728 * 0.35010 * 12 8 7
14 14 N 1.28445 * 110.92257 * 359.77563 * 13 12 8
15 15 C 1.46498 * 125.18813 * 180.02562 * 14 13 12
16 16 C 1.52997 * 109.47034 * 119.99985 * 2 1 3
17 17 H 1.09006 * 109.50093 * 180.02562 * 16 2 1
18 18 C 1.53042 * 109.52514 * 300.14614 * 16 2 1
19 19 C 1.53044 * 109.53780 * 181.33281 * 18 16 2
20 20 C 1.53612 * 109.24242 * 298.51119 * 19 18 16
21 21 N 1.46928 * 108.54512 * 54.85784 * 20 19 18
22 22 C 1.36938 * 120.63121 * 126.37101 * 21 20 19
23 23 H 1.07997 * 119.99674 * 216.85236 * 22 21 20
24 24 C 1.38808 * 120.00448 * 36.84503 * 22 21 20
25 25 N 1.31627 * 119.99835 * 23.91501 * 24 22 21
26 26 Si 1.86802 * 120.00417 * 203.63928 * 24 22 21
27 27 H 1.48499 * 109.46869 * 60.00025 * 26 24 22
28 28 H 1.48498 * 109.47045 * 180.02562 * 26 24 22
29 29 H 1.48499 * 109.46820 * 300.00231 * 26 24 22
30 30 C 1.46924 * 118.73773 * 306.09191 * 21 20 19
31 31 H 1.09010 * 109.47200 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.47130 * 300.00015 * 1 2 3
33 33 H 1.08998 * 109.47288 * 60.00150 * 1 2 3
34 34 H 0.97001 * 120.00285 * 264.99967 * 4 2 1
35 35 H 1.08997 * 115.55214 * 334.32845 * 9 8 7
36 36 H 1.09005 * 117.49376 * 0.02562 * 10 9 8
37 37 H 1.08998 * 117.49885 * 145.02118 * 10 9 8
38 38 H 1.08999 * 117.49898 * 252.51374 * 11 10 9
39 39 H 1.08997 * 117.50057 * 107.49104 * 11 10 9
40 40 H 1.07998 * 126.06656 * 180.10727 * 12 8 7
41 41 H 1.08996 * 109.47659 * 274.44849 * 15 14 13
42 42 H 1.08992 * 109.47261 * 34.45183 * 15 14 13
43 43 H 1.09000 * 109.47013 * 154.45113 * 15 14 13
44 44 H 1.09006 * 109.45930 * 301.35285 * 18 16 2
45 45 H 1.08999 * 109.45780 * 61.31559 * 18 16 2
46 46 H 1.08998 * 109.49608 * 58.58945 * 19 18 16
47 47 H 1.09001 * 109.49699 * 178.64513 * 19 18 16
48 48 H 1.08996 * 109.74219 * 295.11820 * 20 19 18
49 49 H 1.09006 * 109.66578 * 174.55307 * 20 19 18
50 50 H 0.97000 * 119.99522 * 7.40202 * 25 24 22
51 51 H 1.09000 * 109.58638 * 173.65060 * 30 21 20
52 52 H 1.09004 * 109.58813 * 294.07312 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6907 -1.1961
5 6 2.1470 -0.0184 -2.3571
6 8 1.7786 1.1383 -2.4341
7 6 2.7334 -0.6835 -3.5316
8 6 2.0489 -1.2711 -4.5814
9 6 0.5556 -1.3638 -4.7604
10 6 0.0339 -2.2379 -5.9027
11 6 -0.0483 -0.7137 -6.0068
12 6 3.0367 -1.7597 -5.4395
13 7 4.2012 -1.4782 -4.9130
14 7 4.0621 -0.8512 -3.8006
15 6 5.1608 -0.3863 -2.9504
16 6 2.0400 -0.7212 1.2492
17 1 3.1300 -0.7211 1.2500
18 6 1.5275 -0.0029 2.4996
19 6 2.0646 -0.7044 3.7493
20 6 1.5497 -2.1514 3.7782
21 7 1.9188 -2.8041 2.5147
22 6 2.6071 -3.9879 2.5159
23 1 3.3591 -4.1759 1.7639
24 6 2.3385 -4.9460 3.4837
25 7 1.1686 -4.9626 4.0865
26 14 3.6346 -6.2168 3.9250
27 1 4.8506 -5.5292 4.4288
28 1 3.1040 -7.1199 4.9777
29 1 3.9792 -7.0118 2.7190
30 6 1.5297 -2.1657 1.2499
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3634 0.5138 -0.8900
34 1 2.2490 -1.6318 -1.1525
35 1 -0.0309 -1.3325 -3.8421
36 1 0.7710 -2.7461 -6.5245
37 1 -0.8958 -2.7818 -5.7361
38 1 -1.0321 -0.2548 -5.9086
39 1 0.6347 -0.2188 -6.6973
40 1 2.8692 -2.2811 -6.3703
41 1 5.4755 -1.1938 -2.2893
42 1 5.9998 -0.0808 -3.5755
43 1 4.8247 0.4616 -2.3536
44 1 1.8689 1.0323 2.4893
45 1 0.4378 -0.0257 2.5105
46 1 3.1544 -0.7038 3.7267
47 1 1.7189 -0.1780 4.6389
48 1 0.4653 -2.1542 3.8879
49 1 2.0047 -2.6860 4.6122
50 1 0.4577 -4.3770 3.7818
51 1 1.9714 -2.7097 0.4150
52 1 0.4436 -2.1696 1.1575
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001025440145.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:20:15
Heat of formation + Delta-G solvation = 58.492420 kcal
Electronic energy + Delta-G solvation = -31621.940703 eV
Core-core repulsion = 27623.349007 eV
Total energy + Delta-G solvation = -3998.591696 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-43.62153 -41.07451 -39.56448 -38.18311 -36.89011 -34.90028 -34.16940 -32.94009
-32.18691 -31.50694 -29.57306 -28.10668 -27.00928 -25.85599 -24.74771 -24.11685
-23.64966 -23.17971 -21.98996 -21.25192 -20.85111 -20.20280 -19.34305 -18.97859
-17.61548 -17.03336 -16.86958 -16.56782 -16.28496 -16.24687 -15.77310 -15.61201
-15.44929 -15.34749 -15.15594 -15.01056 -14.44905 -14.36593 -13.89754 -13.85148
-13.74637 -13.67315 -13.59824 -13.00790 -12.97884 -12.81580 -12.61618 -12.35366
-12.15497 -12.04871 -11.94108 -11.90969 -11.75420 -11.70395 -11.61741 -11.49531
-11.28545 -11.20532 -11.05733 -10.45513 -10.30186 -10.24962 -9.56923 -8.88135
-8.16817 -5.50970 0.49985 0.98269 1.54715 1.57527 1.62428 1.63637
1.82756 2.07746 2.63881 3.04559 3.20405 3.36256 3.40201 3.50031
3.81794 3.85776 3.88587 3.93893 3.94871 4.09186 4.19174 4.22027
4.24435 4.25315 4.30756 4.34262 4.44856 4.49165 4.52364 4.55854
4.72229 4.72901 4.80201 4.85284 4.86483 4.92108 5.02456 5.04019
5.09649 5.15085 5.22688 5.23001 5.25625 5.28543 5.34119 5.37340
5.44373 5.56221 5.68088 5.89863 6.23912 6.40742 6.87091 6.96677
7.10152 7.75979 8.25521 8.98130
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.010859 B = 0.003061 C = 0.002837
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2578.000335 B = 9146.445771 C = 9866.840495
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.159 3.841
3 H 0.090 0.910
4 N -0.700 5.700
5 C 0.603 3.397
6 O -0.553 6.553
7 C -0.049 4.049
8 C -0.126 4.126
9 C -0.108 4.108
10 C -0.152 4.152
11 C -0.163 4.163
12 C 0.004 3.996
13 N -0.296 5.296
14 N -0.274 5.274
15 C 0.078 3.922
16 C -0.095 4.095
17 H 0.067 0.933
18 C -0.098 4.098
19 C -0.126 4.126
20 C 0.158 3.842
21 N -0.613 5.613
22 C -0.359 4.359
23 H 0.043 0.957
24 C -0.065 4.065
25 N -0.936 5.936
26 Si 1.109 2.891
27 H -0.279 1.279
28 H -0.293 1.293
29 H -0.276 1.276
30 C 0.153 3.847
31 H 0.055 0.945
32 H 0.082 0.918
33 H 0.053 0.947
34 H 0.407 0.593
35 H 0.096 0.904
36 H 0.111 0.889
37 H 0.108 0.892
38 H 0.103 0.897
39 H 0.097 0.903
40 H 0.210 0.790
41 H 0.099 0.901
42 H 0.116 0.884
43 H 0.094 0.906
44 H 0.082 0.918
45 H 0.066 0.934
46 H 0.052 0.948
47 H 0.074 0.926
48 H 0.004 0.996
49 H 0.032 0.968
50 H 0.253 0.747
51 H 0.043 0.957
52 H 0.021 0.979
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.063 10.816 -16.317 19.684
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.055 3.945
3 H 0.108 0.892
4 N -0.351 5.351
5 C 0.387 3.613
6 O -0.430 6.430
7 C -0.178 4.178
8 C -0.136 4.136
9 C -0.128 4.128
10 C -0.189 4.189
11 C -0.201 4.201
12 C -0.173 4.173
13 N -0.127 5.127
14 N -0.063 5.063
15 C -0.061 4.061
16 C -0.116 4.116
17 H 0.086 0.914
18 C -0.136 4.136
19 C -0.165 4.165
20 C 0.032 3.968
21 N -0.337 5.337
22 C -0.489 4.489
23 H 0.061 0.939
24 C -0.263 4.263
25 N -0.576 5.576
26 Si 0.933 3.067
27 H -0.205 1.205
28 H -0.219 1.219
29 H -0.202 1.202
30 C 0.027 3.973
31 H 0.074 0.926
32 H 0.100 0.900
33 H 0.072 0.928
34 H 0.243 0.757
35 H 0.115 0.885
36 H 0.129 0.871
37 H 0.127 0.873
38 H 0.122 0.878
39 H 0.115 0.885
40 H 0.227 0.773
41 H 0.117 0.883
42 H 0.135 0.865
43 H 0.112 0.888
44 H 0.100 0.900
45 H 0.085 0.915
46 H 0.071 0.929
47 H 0.093 0.907
48 H 0.022 0.978
49 H 0.050 0.950
50 H 0.063 0.937
51 H 0.062 0.938
52 H 0.038 0.962
Dipole moment (debyes) X Y Z Total
from point charges 3.487 10.344 -15.379 18.859
hybrid contribution -1.210 0.609 -0.587 1.477
sum 2.277 10.953 -15.966 19.495
Atomic orbital electron populations
1.22219 0.94624 1.02343 1.02713 1.21002 0.94778 0.96412 0.82324
0.89193 1.46225 1.65471 1.14525 1.08911 1.17003 0.77933 0.84894
0.81518 1.90811 1.50661 1.17826 1.83718 1.21302 0.86113 1.10034
1.00319 1.20055 0.95457 1.03446 0.94691 1.20190 0.88865 1.08937
0.94775 1.23099 1.03404 0.93118 0.99255 1.23054 1.02354 0.96243
0.98408 1.23793 0.86621 1.04504 1.02370 1.73128 1.27441 1.13728
0.98392 1.45777 1.04883 1.39626 1.15973 1.22457 0.87807 1.01704
0.94145 1.21717 1.00292 0.95740 0.93833 0.91430 1.21438 1.00720
0.98844 0.92554 1.21990 1.00293 0.95694 0.98504 1.20886 0.95221
0.92320 0.88367 1.44248 1.66071 1.22631 1.00796 1.20066 1.15671
0.94644 1.18477 0.93940 1.27216 1.00665 0.99998 0.98442 1.70892
1.02247 1.39139 1.45308 0.82955 0.73284 0.74059 0.76383 1.20517
1.21878 1.20175 1.21088 0.96169 0.91797 0.88212 0.92574 0.89973
0.92751 0.75683 0.88544 0.87101 0.87321 0.87819 0.88487 0.77299
0.88263 0.86513 0.88767 0.89976 0.91498 0.92921 0.90703 0.97772
0.94954 0.93709 0.93829 0.96161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.03 8.79 71.98 0.63 -3.40 16
2 C 0.16 4.07 2.37 44.99 0.11 4.18 16
3 H 0.09 2.29 7.65 -2.39 -0.02 2.27 16
4 N -0.70 -18.00 4.99 -446.07 -2.23 -20.23 16
5 C 0.60 16.81 6.80 86.58 0.59 17.40 16
6 O -0.55 -18.49 16.79 -4.15 -0.07 -18.56 16
7 C -0.05 -1.30 6.71 40.79 0.27 -1.02 16
8 C -0.13 -3.06 5.94 -19.48 -0.12 -3.17 16
9 C -0.11 -2.30 6.12 -11.54 -0.07 -2.37 16
10 C -0.15 -2.30 10.05 30.60 0.31 -1.99 16
11 C -0.16 -2.78 10.23 30.60 0.31 -2.46 16
12 C 0.00 0.08 11.41 85.18 0.97 1.06 16
13 N -0.30 -7.33 11.90 -57.14 -0.68 -8.01 16
14 N -0.27 -6.59 3.75 -356.04 -1.33 -7.93 16
15 C 0.08 1.32 11.21 127.77 1.43 2.76 16
16 C -0.10 -2.80 2.33 -10.72 -0.02 -2.83 16
17 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16
18 C -0.10 -2.71 4.77 30.62 0.15 -2.56 16
19 C -0.13 -4.22 6.10 30.81 0.19 -4.03 16
20 C 0.16 7.07 4.89 86.50 0.42 7.50 16
21 N -0.61 -29.18 2.70 -698.27 -1.89 -31.07 16
22 C -0.36 -19.41 9.38 84.03 0.79 -18.62 16
23 H 0.04 2.31 7.93 -2.91 -0.02 2.29 16
24 C -0.07 -3.62 4.68 84.86 0.40 -3.22 16
25 N -0.94 -56.06 12.75 21.65 0.28 -55.78 16
26 Si 1.11 49.79 29.98 68.60 2.06 51.85 16
27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
28 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16
29 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16
30 C 0.15 5.79 5.29 86.36 0.46 6.25 16
31 H 0.06 1.51 6.32 -2.38 -0.02 1.50 16
32 H 0.08 1.85 6.46 -2.39 -0.02 1.83 16
33 H 0.05 1.40 8.11 -2.39 -0.02 1.38 16
34 H 0.41 10.53 6.95 -92.71 -0.64 9.88 16
35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16
36 H 0.11 1.37 7.12 -2.38 -0.02 1.35 16
37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16
38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16
39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16
40 H 0.21 3.13 7.34 -2.91 -0.02 3.11 16
41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16
42 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16
43 H 0.09 1.54 7.67 -2.39 -0.02 1.53 16
44 H 0.08 1.84 8.14 -2.38 -0.02 1.83 16
45 H 0.07 1.82 6.50 -2.39 -0.02 1.81 16
46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
47 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
48 H 0.00 0.20 7.92 -2.39 -0.02 0.18 16
49 H 0.03 1.66 6.94 -2.38 -0.02 1.64 16
50 H 0.25 15.52 7.16 -92.71 -0.66 14.86 16
51 H 0.04 1.66 6.52 -2.39 -0.02 1.65 16
52 H 0.02 0.80 6.18 -2.38 -0.01 0.78 16
Total: -1.00 -70.63 409.46 3.34 -67.29
By element:
Atomic # 1 Polarization: 28.60 SS G_CDS: 0.39 Total: 28.99 kcal
Atomic # 6 Polarization: -13.36 SS G_CDS: 6.81 Total: -6.55 kcal
Atomic # 7 Polarization: -117.17 SS G_CDS: -5.85 Total: -123.02 kcal
Atomic # 8 Polarization: -18.49 SS G_CDS: -0.07 Total: -18.56 kcal
Atomic # 14 Polarization: 49.79 SS G_CDS: 2.06 Total: 51.85 kcal
Total: -70.63 3.34 -67.29 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025440145.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.781 kcal
(2) G-P(sol) polarization free energy of solvation -70.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.155 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.492 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds