Wall clock time and date at job start Wed Apr 1 2020 05:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47205 * 2 1 4 4 N 1.46496 * 109.46805 * 120.00365 * 2 1 3 5 5 C 1.34781 * 119.99929 * 274.99453 * 4 2 1 6 6 O 1.21570 * 120.00098 * 0.02562 * 5 4 2 7 7 C 1.47704 * 119.99924 * 180.02562 * 5 4 2 8 8 C 1.41501 * 126.51776 * 180.02562 * 7 5 4 9 9 C 1.35365 * 105.50678 * 179.97438 * 8 7 5 10 10 C 1.50694 * 126.38876 * 179.97438 * 9 8 7 11 11 C 1.53003 * 117.49765 * 33.77064 * 10 9 8 12 12 C 1.52997 * 117.50213 * 325.11016 * 10 9 8 13 13 N 1.35038 * 107.22827 * 359.97438 * 9 8 7 14 14 C 1.46499 * 124.88860 * 180.02562 * 13 9 8 15 15 N 1.28478 * 110.22815 * 0.02562 * 13 9 8 16 16 C 1.52995 * 109.46811 * 240.00242 * 2 1 3 17 17 H 1.09005 * 109.50075 * 300.06445 * 16 2 1 18 18 C 1.53038 * 109.49971 * 60.16219 * 16 2 1 19 19 C 1.53043 * 109.53919 * 181.31204 * 18 16 2 20 20 C 1.53190 * 109.31812 * 298.63787 * 19 18 16 21 21 N 1.46927 * 108.77206 * 54.63087 * 20 19 18 22 22 C 1.36939 * 120.63015 * 126.37517 * 21 20 19 23 23 H 1.08002 * 119.99788 * 331.84119 * 22 21 20 24 24 C 1.38814 * 120.00140 * 151.84803 * 22 21 20 25 25 N 1.31613 * 119.99968 * 343.06389 * 24 22 21 26 26 Si 1.86794 * 119.99993 * 163.07065 * 24 22 21 27 27 H 1.48507 * 109.47162 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47404 * 119.99746 * 26 24 22 29 29 H 1.48503 * 109.46940 * 240.00039 * 26 24 22 30 30 C 1.46924 * 118.74091 * 306.39530 * 21 20 19 31 31 H 1.09004 * 109.47192 * 299.99969 * 1 2 3 32 32 H 1.09003 * 109.47191 * 59.99762 * 1 2 3 33 33 H 1.08995 * 109.47205 * 180.02562 * 1 2 3 34 34 H 0.96999 * 120.00191 * 94.99906 * 4 2 1 35 35 H 1.08003 * 127.25026 * 359.72925 * 8 7 5 36 36 H 1.09009 * 115.55437 * 179.43746 * 10 9 8 37 37 H 1.08991 * 117.49892 * 359.97438 * 11 10 9 38 38 H 1.09002 * 117.50180 * 145.02421 * 11 10 9 39 39 H 1.08994 * 117.50273 * 214.98137 * 12 10 9 40 40 H 1.09009 * 117.49558 * 359.97294 * 12 10 9 41 41 H 1.09003 * 109.46569 * 269.97552 * 14 13 9 42 42 H 1.08996 * 109.46964 * 29.97151 * 14 13 9 43 43 H 1.08999 * 109.47395 * 149.97605 * 14 13 9 44 44 H 1.08995 * 109.46208 * 301.33512 * 18 16 2 45 45 H 1.09004 * 109.45896 * 61.29647 * 18 16 2 46 46 H 1.08999 * 109.49945 * 178.68400 * 19 18 16 47 47 H 1.09005 * 109.52175 * 58.60617 * 19 18 16 48 48 H 1.09001 * 109.58551 * 294.85065 * 20 19 18 49 49 H 1.08998 * 109.70705 * 174.48662 * 20 19 18 50 50 H 0.96993 * 120.00301 * 180.02562 * 25 24 22 51 51 H 1.09007 * 109.58760 * 293.82251 * 30 21 20 52 52 H 1.09003 * 109.58904 * 173.39662 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1611 2.4119 7 6 2.6399 -0.7146 3.5630 8 6 2.8268 -0.1471 4.8457 9 6 3.2880 -1.1545 5.6234 10 6 3.6447 -1.0643 7.0847 11 6 2.8226 -0.1115 7.9550 12 6 4.2640 0.2436 7.5814 13 7 3.3688 -2.2554 4.8456 14 6 3.8249 -3.5711 5.3005 15 7 2.9883 -1.9829 3.6491 16 6 2.0399 -0.7212 -1.2493 17 1 1.6759 -1.7486 -1.2503 18 6 1.5335 0.0022 -2.4992 19 6 2.0159 -0.7373 -3.7493 20 6 3.5475 -0.7379 -3.7783 21 7 4.0441 -1.3005 -2.5151 22 6 4.9300 -2.3447 -2.5169 23 1 4.9347 -3.0474 -3.3370 24 6 5.8218 -2.5001 -1.4646 25 7 6.0563 -1.4958 -0.6469 26 14 6.6893 -4.1346 -1.2092 27 1 6.2555 -5.0942 -2.2562 28 1 8.1581 -3.9347 -1.2983 29 1 6.3435 -4.6745 0.1303 30 6 3.5719 -0.7216 -1.2499 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.2489 -1.6318 1.1525 35 1 2.6441 0.8756 5.1410 36 1 3.9916 -1.9910 7.5421 37 1 2.0242 0.4503 7.4706 38 1 2.6291 -0.4111 8.9851 39 1 5.0180 0.1775 8.3656 40 1 4.4139 1.0387 6.8510 41 1 4.9032 -3.6496 5.1623 42 1 3.5839 -3.6941 6.3564 43 1 3.3268 -4.3486 4.7212 44 1 0.4438 0.0254 -2.4888 45 1 1.9182 1.0220 -2.5095 46 1 1.6354 -0.2350 -4.6386 47 1 1.6520 -1.7646 -3.7280 48 1 3.9112 0.2834 -3.8914 49 1 3.8991 -1.3456 -4.6121 50 1 6.6797 -1.6043 0.0882 51 1 3.9375 0.3010 -1.1569 52 1 3.9374 -1.3199 -0.4153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025440230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:47 Heat of formation + Delta-G solvation = 81.209586 kcal Electronic energy + Delta-G solvation = -31427.900225 eV Core-core repulsion = 27430.293619 eV Total energy + Delta-G solvation = -3997.606606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.65267 -39.35196 -37.69563 -37.43759 -34.98410 -33.51820 -32.96814 -31.24205 -30.30363 -29.73208 -28.65059 -27.39817 -25.18196 -24.12597 -23.38734 -22.66645 -22.41369 -21.90814 -20.47798 -20.14868 -19.55955 -18.80698 -17.60882 -16.69194 -16.31047 -16.26278 -15.56863 -15.25999 -14.92182 -14.47836 -14.44341 -14.08114 -13.94097 -13.62979 -13.47706 -13.24071 -13.06764 -12.89580 -12.71378 -12.55531 -12.37773 -12.15801 -11.95989 -11.86246 -11.83821 -11.32962 -11.24694 -11.04963 -10.97982 -10.86072 -10.65836 -10.56209 -10.37290 -10.16720 -10.00487 -9.86387 -9.77496 -9.47739 -9.32848 -9.02432 -8.75417 -8.54921 -8.41390 -6.60548 -5.73550 -3.16444 1.73089 2.08782 2.44122 3.36949 3.44774 3.47340 3.55228 3.64208 3.80446 4.15073 4.34833 4.51869 4.58133 4.68399 4.72553 4.92359 4.97079 5.14498 5.21180 5.31301 5.35083 5.40018 5.49996 5.56955 5.61767 5.62648 5.66078 5.69631 5.73701 5.83524 5.87243 5.90362 5.98938 6.15786 6.23975 6.27604 6.38562 6.45702 6.51788 6.53812 6.56729 6.73892 6.75621 6.84907 6.96186 6.97681 7.08251 7.43194 7.74178 7.83965 7.84417 8.12109 8.49733 8.62828 9.26008 9.90028 10.47576 11.33821 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003532 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.673637 B = 7924.985424 C = 9981.328265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.085 0.915 4 N -0.700 5.700 5 C 0.607 3.393 6 O -0.543 6.543 7 C -0.007 4.007 8 C -0.178 4.178 9 C 0.040 3.960 10 C -0.096 4.096 11 C -0.163 4.163 12 C -0.162 4.162 13 N -0.280 5.280 14 C 0.086 3.914 15 N -0.251 5.251 16 C -0.120 4.120 17 H 0.067 0.933 18 C -0.101 4.101 19 C -0.133 4.133 20 C 0.143 3.857 21 N -0.592 5.592 22 C -0.252 4.252 23 H 0.064 0.936 24 C 0.004 3.996 25 N -0.897 5.897 26 Si 0.897 3.103 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.180 3.820 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.407 0.593 35 H 0.158 0.842 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.016 0.984 49 H 0.051 0.949 50 H 0.252 0.748 51 H 0.016 0.984 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 -0.794 15.092 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 H 0.103 0.897 4 N -0.349 5.349 5 C 0.391 3.609 6 O -0.419 6.419 7 C -0.167 4.167 8 C -0.206 4.206 9 C -0.084 4.084 10 C -0.115 4.115 11 C -0.200 4.200 12 C -0.200 4.200 13 N -0.068 5.068 14 C -0.055 4.055 15 N -0.087 5.087 16 C -0.141 4.141 17 H 0.086 0.914 18 C -0.140 4.140 19 C -0.172 4.172 20 C 0.017 3.983 21 N -0.315 5.315 22 C -0.382 4.382 23 H 0.082 0.918 24 C -0.195 4.195 25 N -0.541 5.541 26 Si 0.727 3.273 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.217 1.217 30 C 0.054 3.946 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.243 0.757 35 H 0.176 0.824 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.034 0.966 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.517 -1.075 14.611 16.946 hybrid contribution 0.735 -0.740 0.655 1.231 sum -7.783 -1.815 15.266 17.231 Atomic orbital electron populations 1.22216 0.95995 1.01733 1.01964 1.21011 0.93039 0.97576 0.83812 0.89658 1.45878 1.65578 1.14577 1.08905 1.16809 0.77080 0.85538 0.81470 1.90743 1.51505 1.14931 1.84757 1.21915 1.08012 0.90832 0.95963 1.21341 1.07429 1.00133 0.91674 1.20375 1.06699 0.87663 0.93654 1.20247 1.06706 0.96277 0.88318 1.23100 0.95133 1.01993 0.99815 1.23114 0.96259 0.97274 1.03309 1.45208 1.46236 1.09771 1.05580 1.22145 1.01755 0.80435 1.01141 1.73638 1.15451 1.17450 1.02121 1.22147 1.01354 0.98663 0.91943 0.91424 1.21440 0.98785 0.99023 0.94710 1.21993 0.99087 0.99822 0.96307 1.20923 0.91054 0.96311 0.90039 1.44048 1.49965 1.37973 0.99490 1.19200 1.10280 1.01608 1.07112 0.91779 1.25025 0.97127 0.97204 1.00112 1.70044 1.36689 1.28708 1.18643 0.86298 0.79153 0.84123 0.77686 1.20279 1.21830 1.21673 1.20773 0.86270 0.97200 0.90312 0.92669 0.91466 0.92793 0.75712 0.82437 0.86775 0.87965 0.88129 0.88066 0.87853 0.89620 0.88949 0.88377 0.93085 0.92576 0.93184 0.92495 0.96615 0.93030 0.93816 0.96600 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.14 37.16 0.34 -2.04 16 2 C 0.15 2.65 2.16 -67.93 -0.15 2.50 16 3 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 4 N -0.70 -12.82 4.47 -54.80 -0.25 -13.06 16 5 C 0.61 11.66 7.79 -12.39 -0.10 11.57 16 6 O -0.54 -11.47 16.59 5.30 0.09 -11.38 16 7 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 8 C -0.18 -2.67 9.86 -39.36 -0.39 -3.06 16 9 C 0.04 0.50 6.60 -82.21 -0.54 -0.04 16 10 C -0.10 -0.83 5.94 -91.77 -0.54 -1.38 16 11 C -0.16 -1.19 10.05 -26.69 -0.27 -1.45 16 12 C -0.16 -1.26 10.06 -26.69 -0.27 -1.53 16 13 N -0.28 -3.76 3.70 -63.85 -0.24 -4.00 16 14 C 0.09 0.74 11.05 59.85 0.66 1.40 16 15 N -0.25 -4.23 11.67 33.42 0.39 -3.84 16 16 C -0.12 -2.28 1.97 -90.50 -0.18 -2.46 16 17 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.10 -1.72 4.86 -26.69 -0.13 -1.85 16 19 C -0.13 -2.33 6.08 -26.61 -0.16 -2.50 16 20 C 0.14 3.07 6.52 -3.71 -0.02 3.05 16 21 N -0.59 -15.04 2.99 -172.32 -0.52 -15.56 16 22 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 23 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 24 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 25 N -0.90 -26.41 11.20 55.49 0.62 -25.79 16 26 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 C 0.18 4.34 4.34 -3.71 -0.02 4.32 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.89 6.41 -51.93 -0.33 0.56 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.41 7.48 8.14 -40.82 -0.33 7.15 16 35 H 0.16 2.18 8.06 -52.48 -0.42 1.76 16 36 H 0.11 0.75 7.17 -51.92 -0.37 0.38 16 37 H 0.10 0.82 7.94 -51.93 -0.41 0.40 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.92 7.97 -51.92 -0.41 0.51 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.49 7.12 -51.93 -0.37 0.12 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.74 6.36 -51.93 -0.33 0.41 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 50 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.09 2.39 5.56 -51.93 -0.29 2.11 16 LS Contribution 413.70 15.07 6.23 6.23 Total: -1.00 -33.93 413.70 -9.98 -43.91 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.70 Total: 7.96 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.58 Total: -1.28 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.01 Total: -62.24 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.93 -9.98 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.119 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds