Wall clock time and date at job start Wed Apr 1 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47205 * 2 1 4 4 N 1.46496 * 109.46805 * 120.00365 * 2 1 3 5 5 C 1.34781 * 119.99929 * 274.99453 * 4 2 1 6 6 O 1.21570 * 120.00098 * 0.02562 * 5 4 2 7 7 C 1.47704 * 119.99924 * 180.02562 * 5 4 2 8 8 C 1.41501 * 126.51776 * 180.02562 * 7 5 4 9 9 C 1.35365 * 105.50678 * 179.97438 * 8 7 5 10 10 C 1.50694 * 126.38876 * 179.97438 * 9 8 7 11 11 C 1.53003 * 117.49765 * 33.77064 * 10 9 8 12 12 C 1.52997 * 117.50213 * 325.11016 * 10 9 8 13 13 N 1.35038 * 107.22827 * 359.97438 * 9 8 7 14 14 C 1.46499 * 124.88860 * 180.02562 * 13 9 8 15 15 N 1.28478 * 110.22815 * 0.02562 * 13 9 8 16 16 C 1.52995 * 109.46811 * 240.00242 * 2 1 3 17 17 H 1.09005 * 109.50075 * 300.06445 * 16 2 1 18 18 C 1.53038 * 109.49971 * 60.16219 * 16 2 1 19 19 C 1.53043 * 109.53919 * 181.31204 * 18 16 2 20 20 C 1.53190 * 109.31812 * 298.63787 * 19 18 16 21 21 N 1.46927 * 108.77206 * 54.63087 * 20 19 18 22 22 C 1.36939 * 120.63015 * 126.37517 * 21 20 19 23 23 H 1.08002 * 119.99788 * 331.84119 * 22 21 20 24 24 C 1.38814 * 120.00140 * 151.84803 * 22 21 20 25 25 N 1.31613 * 119.99968 * 343.06389 * 24 22 21 26 26 Si 1.86794 * 119.99993 * 163.07065 * 24 22 21 27 27 H 1.48507 * 109.47162 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47404 * 119.99746 * 26 24 22 29 29 H 1.48503 * 109.46940 * 240.00039 * 26 24 22 30 30 C 1.46924 * 118.74091 * 306.39530 * 21 20 19 31 31 H 1.09004 * 109.47192 * 299.99969 * 1 2 3 32 32 H 1.09003 * 109.47191 * 59.99762 * 1 2 3 33 33 H 1.08995 * 109.47205 * 180.02562 * 1 2 3 34 34 H 0.96999 * 120.00191 * 94.99906 * 4 2 1 35 35 H 1.08003 * 127.25026 * 359.72925 * 8 7 5 36 36 H 1.09009 * 115.55437 * 179.43746 * 10 9 8 37 37 H 1.08991 * 117.49892 * 359.97438 * 11 10 9 38 38 H 1.09002 * 117.50180 * 145.02421 * 11 10 9 39 39 H 1.08994 * 117.50273 * 214.98137 * 12 10 9 40 40 H 1.09009 * 117.49558 * 359.97294 * 12 10 9 41 41 H 1.09003 * 109.46569 * 269.97552 * 14 13 9 42 42 H 1.08996 * 109.46964 * 29.97151 * 14 13 9 43 43 H 1.08999 * 109.47395 * 149.97605 * 14 13 9 44 44 H 1.08995 * 109.46208 * 301.33512 * 18 16 2 45 45 H 1.09004 * 109.45896 * 61.29647 * 18 16 2 46 46 H 1.08999 * 109.49945 * 178.68400 * 19 18 16 47 47 H 1.09005 * 109.52175 * 58.60617 * 19 18 16 48 48 H 1.09001 * 109.58551 * 294.85065 * 20 19 18 49 49 H 1.08998 * 109.70705 * 174.48662 * 20 19 18 50 50 H 0.96993 * 120.00301 * 180.02562 * 25 24 22 51 51 H 1.09007 * 109.58760 * 293.82251 * 30 21 20 52 52 H 1.09003 * 109.58904 * 173.39662 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1611 2.4119 7 6 2.6399 -0.7146 3.5630 8 6 2.8268 -0.1471 4.8457 9 6 3.2880 -1.1545 5.6234 10 6 3.6447 -1.0643 7.0847 11 6 2.8226 -0.1115 7.9550 12 6 4.2640 0.2436 7.5814 13 7 3.3688 -2.2554 4.8456 14 6 3.8249 -3.5711 5.3005 15 7 2.9883 -1.9829 3.6491 16 6 2.0399 -0.7212 -1.2493 17 1 1.6759 -1.7486 -1.2503 18 6 1.5335 0.0022 -2.4992 19 6 2.0159 -0.7373 -3.7493 20 6 3.5475 -0.7379 -3.7783 21 7 4.0441 -1.3005 -2.5151 22 6 4.9300 -2.3447 -2.5169 23 1 4.9347 -3.0474 -3.3370 24 6 5.8218 -2.5001 -1.4646 25 7 6.0563 -1.4958 -0.6469 26 14 6.6893 -4.1346 -1.2092 27 1 6.2555 -5.0942 -2.2562 28 1 8.1581 -3.9347 -1.2983 29 1 6.3435 -4.6745 0.1303 30 6 3.5719 -0.7216 -1.2499 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.2489 -1.6318 1.1525 35 1 2.6441 0.8756 5.1410 36 1 3.9916 -1.9910 7.5421 37 1 2.0242 0.4503 7.4706 38 1 2.6291 -0.4111 8.9851 39 1 5.0180 0.1775 8.3656 40 1 4.4139 1.0387 6.8510 41 1 4.9032 -3.6496 5.1623 42 1 3.5839 -3.6941 6.3564 43 1 3.3268 -4.3486 4.7212 44 1 0.4438 0.0254 -2.4888 45 1 1.9182 1.0220 -2.5095 46 1 1.6354 -0.2350 -4.6386 47 1 1.6520 -1.7646 -3.7280 48 1 3.9112 0.2834 -3.8914 49 1 3.8991 -1.3456 -4.6121 50 1 6.6797 -1.6043 0.0882 51 1 3.9375 0.3010 -1.1569 52 1 3.9374 -1.3199 -0.4153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025440230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:46 Heat of formation + Delta-G solvation = 60.264495 kcal Electronic energy + Delta-G solvation = -31428.808473 eV Core-core repulsion = 27430.293619 eV Total energy + Delta-G solvation = -3998.514853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.75890 -40.86275 -39.32863 -38.13302 -36.63321 -34.86360 -34.50822 -32.84074 -31.64385 -31.31290 -30.16249 -28.40832 -27.10979 -25.41266 -24.42222 -23.81392 -23.64134 -23.23571 -21.81037 -21.55212 -20.96280 -20.21819 -18.76219 -18.55680 -17.58733 -17.33811 -17.03474 -16.83558 -16.01858 -15.87525 -15.80774 -15.36838 -15.31151 -15.01259 -14.95786 -14.70598 -14.66474 -14.14295 -14.05944 -13.78147 -13.65102 -13.47092 -13.34400 -12.97740 -12.84880 -12.72219 -12.66426 -12.40555 -12.37472 -12.11941 -12.03356 -12.00702 -11.98103 -11.71473 -11.50343 -11.41168 -11.33660 -11.10806 -11.00648 -10.56718 -10.24606 -9.94502 -9.77078 -8.67427 -7.86599 -5.33393 0.48795 0.97614 1.42234 1.43419 1.50830 1.54855 2.17504 2.36743 2.49402 3.02628 3.23871 3.26545 3.45884 3.55916 3.81770 3.95388 3.98391 4.07224 4.08373 4.10842 4.13839 4.29502 4.30097 4.39639 4.42043 4.48863 4.53768 4.58596 4.66140 4.70653 4.76440 4.81579 4.85957 4.88293 4.99767 5.01846 5.05884 5.15105 5.18005 5.19589 5.27303 5.27777 5.28305 5.37989 5.46803 5.53553 5.57663 5.67330 5.78919 5.80904 6.37895 6.42961 6.86177 7.14004 7.15048 7.86618 8.38888 9.17988 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003532 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.673637 B = 7924.985424 C = 9981.328265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.152 3.848 3 H 0.062 0.938 4 N -0.699 5.699 5 C 0.601 3.399 6 O -0.573 6.573 7 C -0.040 4.040 8 C -0.202 4.202 9 C 0.057 3.943 10 C -0.106 4.106 11 C -0.151 4.151 12 C -0.163 4.163 13 N -0.276 5.276 14 C 0.072 3.928 15 N -0.278 5.278 16 C -0.104 4.104 17 H 0.070 0.930 18 C -0.099 4.099 19 C -0.121 4.121 20 C 0.135 3.865 21 N -0.611 5.611 22 C -0.261 4.261 23 H 0.067 0.933 24 C -0.048 4.048 25 N -0.931 5.931 26 Si 0.963 3.037 27 H -0.264 1.264 28 H -0.294 1.294 29 H -0.289 1.289 30 C 0.193 3.807 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.406 0.594 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.133 0.867 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.050 0.950 46 H 0.085 0.915 47 H 0.059 0.941 48 H 0.007 0.993 49 H 0.053 0.947 50 H 0.245 0.755 51 H -0.025 1.025 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 -2.517 16.177 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.047 3.953 3 H 0.080 0.920 4 N -0.348 5.348 5 C 0.387 3.613 6 O -0.451 6.451 7 C -0.199 4.199 8 C -0.230 4.230 9 C -0.068 4.068 10 C -0.126 4.126 11 C -0.188 4.188 12 C -0.200 4.200 13 N -0.064 5.064 14 C -0.066 4.066 15 N -0.115 5.115 16 C -0.125 4.125 17 H 0.088 0.912 18 C -0.137 4.137 19 C -0.160 4.160 20 C 0.009 3.991 21 N -0.335 5.335 22 C -0.392 4.392 23 H 0.085 0.915 24 C -0.244 4.244 25 N -0.577 5.577 26 Si 0.791 3.209 27 H -0.188 1.188 28 H -0.222 1.222 29 H -0.216 1.216 30 C 0.068 3.932 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.241 0.759 35 H 0.176 0.824 36 H 0.163 0.837 37 H 0.108 0.892 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.151 0.849 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.025 0.975 49 H 0.071 0.929 50 H 0.054 0.946 51 H -0.007 1.007 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.849 -2.817 15.653 18.707 hybrid contribution 1.230 -0.194 0.319 1.285 sum -8.620 -3.011 15.972 18.398 Atomic orbital electron populations 1.22117 0.92942 1.02833 1.02774 1.21020 0.95251 0.95942 0.83048 0.92004 1.45930 1.65386 1.14412 1.09048 1.17135 0.76638 0.85361 0.82188 1.90697 1.53019 1.16032 1.85388 1.21836 1.10025 0.91773 0.96239 1.21494 1.09033 1.01093 0.91340 1.20915 1.04140 0.86487 0.95240 1.20516 1.08080 0.98148 0.85846 1.23183 0.94373 1.00612 1.00662 1.23181 0.97462 0.95999 1.03381 1.45700 1.44677 1.11434 1.04637 1.22616 1.02193 0.78269 1.03550 1.73553 1.16605 1.17148 1.04155 1.21914 0.97226 0.99390 0.93929 0.91199 1.21472 1.01045 0.98168 0.93020 1.21876 0.95487 1.00584 0.98038 1.21140 0.94126 0.95434 0.88370 1.44354 1.50095 1.37913 1.01101 1.19537 1.10332 1.02238 1.07059 0.91535 1.25780 0.98240 1.00266 1.00073 1.70233 1.37591 1.30721 1.19145 0.85276 0.77546 0.80387 0.77710 1.18800 1.22176 1.21602 1.20480 0.89739 0.93913 0.89115 0.93337 0.89141 0.91461 0.75890 0.82351 0.83659 0.89203 0.85353 0.85712 0.89749 0.88898 0.84877 0.88032 0.89182 0.93097 0.89617 0.92243 0.97541 0.92879 0.94597 1.00654 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.14 71.98 0.66 -3.54 16 2 C 0.15 5.48 2.16 44.99 0.10 5.58 16 3 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 4 N -0.70 -27.07 4.47 -445.55 -1.99 -29.07 16 5 C 0.60 24.72 7.79 86.74 0.68 25.39 16 6 O -0.57 -25.81 16.59 -3.94 -0.07 -25.87 16 7 C -0.04 -1.51 7.13 42.45 0.30 -1.20 16 8 C -0.20 -6.35 9.86 22.41 0.22 -6.13 16 9 C 0.06 1.41 6.60 41.40 0.27 1.69 16 10 C -0.11 -1.59 5.94 -11.54 -0.07 -1.66 16 11 C -0.15 -1.84 10.05 30.62 0.31 -1.53 16 12 C -0.16 -2.23 10.06 30.62 0.31 -1.92 16 13 N -0.28 -7.30 3.70 -355.93 -1.32 -8.61 16 14 C 0.07 1.10 11.05 127.77 1.41 2.51 16 15 N -0.28 -9.69 11.67 -48.18 -0.56 -10.25 16 16 C -0.10 -3.96 1.97 -10.72 -0.02 -3.98 16 17 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 18 C -0.10 -3.17 4.86 30.62 0.15 -3.02 16 19 C -0.12 -3.96 6.08 30.67 0.19 -3.77 16 20 C 0.13 5.75 6.52 86.36 0.56 6.31 16 21 N -0.61 -31.77 2.99 -699.09 -2.09 -33.87 16 22 C -0.26 -14.73 9.58 84.03 0.81 -13.93 16 23 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 24 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 25 N -0.93 -57.31 11.20 21.65 0.24 -57.07 16 26 Si 0.96 45.71 29.59 68.60 2.03 47.73 16 27 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 30 C 0.19 9.74 4.34 86.36 0.37 10.12 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 2.13 6.41 -2.39 -0.02 2.11 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.41 15.83 8.14 -92.71 -0.75 15.08 16 35 H 0.16 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.15 1.27 7.17 -2.38 -0.02 1.26 16 37 H 0.09 1.35 7.94 -2.39 -0.02 1.33 16 38 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.50 7.97 -2.38 -0.02 1.48 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.13 0.91 7.12 -2.39 -0.02 0.90 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.09 2.25 6.36 -2.39 -0.02 2.24 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 48 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 50 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 51 H -0.02 -1.41 8.14 -2.38 -0.02 -1.43 16 52 H 0.06 3.28 5.56 -2.39 -0.01 3.26 16 Total: -1.00 -78.93 413.70 3.07 -75.86 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.16 Total: 32.57 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 6.66 Total: 8.58 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -5.72 Total: -138.87 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.07 Total: -25.87 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -78.93 3.07 -75.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.127 kcal (2) G-P(sol) polarization free energy of solvation -78.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds