Wall clock time and date at job start Wed Apr 1 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46861 * 2 1 4 4 N 1.46493 * 109.47453 * 120.00462 * 2 1 3 5 5 C 1.34777 * 119.99782 * 275.00158 * 4 2 1 6 6 O 1.21570 * 120.00016 * 359.97438 * 5 4 2 7 7 C 1.47708 * 120.00010 * 179.97438 * 5 4 2 8 8 C 1.41509 * 126.51753 * 180.02562 * 7 5 4 9 9 C 1.35362 * 105.50118 * 180.02562 * 8 7 5 10 10 C 1.50706 * 126.38335 * 180.02562 * 9 8 7 11 11 C 1.52991 * 117.50127 * 33.59335 * 10 9 8 12 12 C 1.52995 * 117.49775 * 324.96917 * 10 9 8 13 13 N 1.35039 * 107.23022 * 359.97438 * 9 8 7 14 14 C 1.46497 * 124.88149 * 179.97438 * 13 9 8 15 15 N 1.28463 * 110.22945 * 359.72664 * 13 9 8 16 16 C 1.53005 * 109.47202 * 240.00475 * 2 1 3 17 17 H 1.08996 * 109.49867 * 185.06249 * 16 2 1 18 18 C 1.53041 * 109.49609 * 64.99693 * 16 2 1 19 19 C 1.53050 * 109.53333 * 178.68713 * 18 16 2 20 20 C 1.53187 * 109.31442 * 61.36497 * 19 18 16 21 21 N 1.46923 * 108.77767 * 305.36253 * 20 19 18 22 22 C 1.36931 * 120.63418 * 233.59224 * 21 20 19 23 23 H 1.07999 * 120.00422 * 151.85070 * 22 21 20 24 24 C 1.38819 * 119.99703 * 331.84223 * 22 21 20 25 25 N 1.31616 * 119.99988 * 343.07039 * 24 22 21 26 26 Si 1.86799 * 119.99793 * 163.07074 * 24 22 21 27 27 H 1.48501 * 109.47015 * 90.00111 * 26 24 22 28 28 H 1.48503 * 109.47008 * 209.99917 * 26 24 22 29 29 H 1.48495 * 109.47344 * 330.00172 * 26 24 22 30 30 C 1.46927 * 118.73753 * 53.60966 * 21 20 19 31 31 H 1.09001 * 109.46505 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47250 * 299.99536 * 1 2 3 33 33 H 1.08999 * 109.47117 * 60.00310 * 1 2 3 34 34 H 0.96998 * 120.00273 * 95.00063 * 4 2 1 35 35 H 1.07992 * 127.24974 * 359.97438 * 8 7 5 36 36 H 1.09007 * 115.54857 * 179.30111 * 10 9 8 37 37 H 1.09005 * 117.49858 * 0.02562 * 11 10 9 38 38 H 1.08997 * 117.50188 * 145.01894 * 11 10 9 39 39 H 1.09005 * 117.49892 * 214.98031 * 12 10 9 40 40 H 1.09001 * 117.50210 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.47346 * 90.00334 * 14 13 9 42 42 H 1.09005 * 109.46804 * 209.99940 * 14 13 9 43 43 H 1.08995 * 109.47546 * 330.00274 * 14 13 9 44 44 H 1.09001 * 109.45854 * 298.70119 * 18 16 2 45 45 H 1.08994 * 109.46385 * 58.66456 * 18 16 2 46 46 H 1.09003 * 109.49439 * 181.31750 * 19 18 16 47 47 H 1.08998 * 109.49392 * 301.40764 * 19 18 16 48 48 H 1.09004 * 109.58634 * 185.57706 * 20 19 18 49 49 H 1.09000 * 109.58649 * 65.15355 * 20 19 18 50 50 H 0.96999 * 120.00068 * 180.02562 * 25 24 22 51 51 H 1.08996 * 109.59027 * 186.60748 * 30 21 20 52 52 H 1.09005 * 109.58876 * 66.17733 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3570 6 8 1.8583 1.1613 2.4116 7 6 2.6390 -0.7148 3.5631 8 6 2.8257 -0.1473 4.8460 9 6 3.2871 -1.1547 5.6235 10 6 3.6427 -1.0648 7.0853 11 6 2.8221 -0.1099 7.9545 12 6 4.2637 0.2422 7.5821 13 7 3.3682 -2.2555 4.8456 14 6 3.8255 -3.5709 5.3003 15 7 2.9818 -1.9846 3.6508 16 6 2.0400 -0.7212 -1.2493 17 1 3.1262 -0.8006 -1.2056 18 6 1.6354 0.0688 -2.4961 19 6 2.1733 -0.6345 -3.7445 20 6 1.5612 -2.0355 -3.8400 21 7 1.8220 -2.7522 -2.5842 22 6 2.4219 -3.9831 -2.5950 23 1 3.0106 -4.3043 -1.7484 24 6 2.2732 -4.8181 -3.6939 25 7 1.3128 -4.5940 -4.5655 26 14 3.4363 -6.2596 -3.9357 27 1 2.8826 -7.4609 -3.2607 28 1 3.5896 -6.5339 -5.3871 29 1 4.7612 -5.9302 -3.3515 30 6 1.4264 -2.1233 -1.3167 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 1.1524 35 1 2.6401 0.8745 5.1420 36 1 3.9877 -1.9920 7.5431 37 1 2.0248 0.4530 7.4693 38 1 2.6270 -0.4087 8.9844 39 1 5.0171 0.1750 8.3671 40 1 4.4155 1.0369 6.8517 41 1 2.9739 -4.1459 5.6642 42 1 4.2929 -4.1001 4.4698 43 1 4.5498 -3.4456 6.1051 44 1 0.5484 0.1271 -2.5521 45 1 2.0504 1.0751 -2.4390 46 1 1.9048 -0.0589 -4.6304 47 1 3.2582 -0.7152 -3.6775 48 1 2.0148 -2.5766 -4.6705 49 1 0.4857 -1.9544 -3.9980 50 1 1.2086 -5.1777 -5.3332 51 1 1.7911 -2.7221 -0.4822 52 1 0.3399 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025440231.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:52 Heat of formation + Delta-G solvation = 82.821880 kcal Electronic energy + Delta-G solvation = -30794.374834 eV Core-core repulsion = 26796.838142 eV Total energy + Delta-G solvation = -3997.536692 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.86901 -39.60532 -37.88706 -37.60248 -35.09793 -33.71775 -32.92295 -31.10124 -30.42462 -30.39373 -28.14673 -27.51563 -25.26104 -24.48383 -23.64546 -22.80698 -22.74286 -22.04325 -20.68579 -20.31176 -19.48278 -18.57926 -17.77367 -16.78719 -16.48027 -16.39905 -15.64921 -15.41528 -14.88326 -14.74807 -14.62882 -14.27487 -14.16053 -13.88731 -13.66669 -13.38582 -13.14262 -12.96814 -12.88226 -12.42645 -12.34376 -12.23730 -12.12655 -11.98608 -11.73858 -11.55254 -11.42809 -11.22933 -10.97061 -10.86778 -10.75833 -10.50890 -10.42573 -10.16205 -10.11313 -9.93051 -9.81116 -9.54129 -9.34582 -9.24457 -8.95613 -8.77384 -8.43203 -6.61841 -5.76235 -3.18270 1.50539 1.87425 2.24098 3.33978 3.37740 3.44881 3.46277 3.47365 3.57202 3.97863 4.17306 4.42600 4.50619 4.53747 4.56528 4.74541 4.78866 5.05850 5.10764 5.14960 5.21626 5.29559 5.34305 5.44698 5.47591 5.50751 5.54611 5.64356 5.69055 5.76015 5.78582 5.80829 5.94013 6.09730 6.19187 6.26678 6.30274 6.32603 6.42482 6.54792 6.57338 6.65681 6.73544 6.77216 6.86278 6.92689 7.05479 7.44435 7.61485 7.71015 7.81808 7.89453 8.38550 8.47967 9.24248 9.87967 10.45096 11.32080 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.002607 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.471198 B =10739.331002 C =12559.126905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.083 0.917 4 N -0.706 5.706 5 C 0.604 3.396 6 O -0.541 6.541 7 C -0.011 4.011 8 C -0.178 4.178 9 C 0.042 3.958 10 C -0.098 4.098 11 C -0.161 4.161 12 C -0.162 4.162 13 N -0.279 5.279 14 C 0.084 3.916 15 N -0.254 5.254 16 C -0.112 4.112 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.251 4.251 23 H 0.064 0.936 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.151 3.849 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.408 0.592 35 H 0.159 0.841 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.017 0.983 50 H 0.253 0.747 51 H 0.048 0.952 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 7.481 22.896 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.101 0.899 4 N -0.357 5.357 5 C 0.388 3.612 6 O -0.417 6.417 7 C -0.171 4.171 8 C -0.206 4.206 9 C -0.082 4.082 10 C -0.117 4.117 11 C -0.199 4.199 12 C -0.200 4.200 13 N -0.067 5.067 14 C -0.056 4.056 15 N -0.090 5.090 16 C -0.133 4.133 17 H 0.090 0.910 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.380 4.380 23 H 0.081 0.919 24 C -0.197 4.197 25 N -0.547 5.547 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.024 3.976 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.244 0.756 35 H 0.176 0.824 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.103 0.897 49 H 0.035 0.965 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.066 7.083 22.136 23.594 hybrid contribution 0.658 -0.738 0.269 1.024 sum 4.724 6.346 22.404 23.760 Atomic orbital electron populations 1.22264 0.95360 1.02776 1.01898 1.21072 0.94235 0.96754 0.83436 0.89899 1.46059 1.65764 1.14724 1.09143 1.16870 0.77255 0.85627 0.81472 1.90761 1.51231 1.15022 1.84642 1.21930 1.08404 0.90715 0.96064 1.21360 1.07330 1.00302 0.91606 1.20412 1.06526 0.87564 0.93684 1.20268 1.06894 0.96327 0.88261 1.23096 0.95090 1.01774 0.99945 1.23104 0.96401 0.97168 1.03321 1.45236 1.45945 1.09859 1.05641 1.22183 1.01297 0.80024 1.02096 1.73623 1.15712 1.17092 1.02549 1.21948 1.00941 0.98017 0.92422 0.90973 1.21422 1.00519 0.97207 0.94677 1.22182 1.00597 0.99587 0.95788 1.20783 0.96575 0.88019 0.90195 1.44020 1.69900 1.17440 0.99961 1.19151 1.23276 0.91998 1.03611 0.91855 1.25029 0.97448 0.97631 0.99557 1.70034 1.30324 1.39517 1.14776 0.86334 0.81023 0.82574 0.77065 1.21462 1.21591 1.20542 1.21004 0.96157 0.90411 0.89986 0.91574 0.92832 0.91357 0.75558 0.82359 0.86664 0.87917 0.88004 0.88011 0.87921 0.89611 0.88138 0.88816 0.92217 0.93510 0.93252 0.92834 0.89654 0.96463 0.93694 0.93387 0.95631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.76 37.16 0.33 -2.16 16 2 C 0.15 2.36 2.35 -67.93 -0.16 2.20 16 3 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 4 N -0.71 -11.11 5.01 -54.80 -0.27 -11.38 16 5 C 0.60 9.92 7.79 -12.39 -0.10 9.82 16 6 O -0.54 -10.03 16.59 5.30 0.09 -9.95 16 7 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 8 C -0.18 -2.23 9.86 -39.36 -0.39 -2.62 16 9 C 0.04 0.43 6.60 -82.20 -0.54 -0.11 16 10 C -0.10 -0.66 5.93 -91.78 -0.54 -1.20 16 11 C -0.16 -0.93 10.05 -26.74 -0.27 -1.20 16 12 C -0.16 -0.93 10.05 -26.74 -0.27 -1.20 16 13 N -0.28 -3.03 3.70 -63.85 -0.24 -3.26 16 14 C 0.08 0.52 11.05 59.85 0.66 1.18 16 15 N -0.25 -3.55 11.67 33.42 0.39 -3.16 16 16 C -0.11 -1.97 2.27 -90.49 -0.21 -2.17 16 17 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 18 C -0.10 -1.71 4.89 -26.68 -0.13 -1.84 16 19 C -0.14 -2.75 6.08 -26.61 -0.16 -2.91 16 20 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 21 N -0.59 -14.74 2.99 -172.32 -0.52 -15.25 16 22 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 23 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 24 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 25 N -0.90 -26.23 11.20 55.49 0.62 -25.61 16 26 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 C 0.15 3.11 5.26 -3.71 -0.02 3.09 16 31 H 0.07 1.03 6.23 -51.93 -0.32 0.71 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.96 6.60 -51.93 -0.34 0.62 16 34 H 0.41 6.38 7.01 -40.82 -0.29 6.09 16 35 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.12 0.54 7.18 -51.93 -0.37 0.17 16 37 H 0.10 0.67 7.94 -51.93 -0.41 0.26 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.67 7.97 -51.93 -0.41 0.26 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.33 7.13 -51.93 -0.37 -0.04 16 44 H 0.06 1.00 6.63 -51.93 -0.34 0.65 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 51 H 0.05 0.98 6.75 -51.93 -0.35 0.63 16 52 H 0.03 0.54 6.06 -51.93 -0.31 0.23 16 LS Contribution 408.74 15.07 6.16 6.16 Total: -1.00 -33.30 408.74 -9.87 -43.18 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.44 Total: 5.45 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.64 Total: -2.85 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.02 Total: -58.67 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.30 -9.87 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440231.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.001 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds