Wall clock time and date at job start Wed Apr 1 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46861 * 2 1 4 4 N 1.46493 * 109.47453 * 120.00462 * 2 1 3 5 5 C 1.34777 * 119.99782 * 275.00158 * 4 2 1 6 6 O 1.21570 * 120.00016 * 359.97438 * 5 4 2 7 7 C 1.47708 * 120.00010 * 179.97438 * 5 4 2 8 8 C 1.41509 * 126.51753 * 180.02562 * 7 5 4 9 9 C 1.35362 * 105.50118 * 180.02562 * 8 7 5 10 10 C 1.50706 * 126.38335 * 180.02562 * 9 8 7 11 11 C 1.52991 * 117.50127 * 33.59335 * 10 9 8 12 12 C 1.52995 * 117.49775 * 324.96917 * 10 9 8 13 13 N 1.35039 * 107.23022 * 359.97438 * 9 8 7 14 14 C 1.46497 * 124.88149 * 179.97438 * 13 9 8 15 15 N 1.28463 * 110.22945 * 359.72664 * 13 9 8 16 16 C 1.53005 * 109.47202 * 240.00475 * 2 1 3 17 17 H 1.08996 * 109.49867 * 185.06249 * 16 2 1 18 18 C 1.53041 * 109.49609 * 64.99693 * 16 2 1 19 19 C 1.53050 * 109.53333 * 178.68713 * 18 16 2 20 20 C 1.53187 * 109.31442 * 61.36497 * 19 18 16 21 21 N 1.46923 * 108.77767 * 305.36253 * 20 19 18 22 22 C 1.36931 * 120.63418 * 233.59224 * 21 20 19 23 23 H 1.07999 * 120.00422 * 151.85070 * 22 21 20 24 24 C 1.38819 * 119.99703 * 331.84223 * 22 21 20 25 25 N 1.31616 * 119.99988 * 343.07039 * 24 22 21 26 26 Si 1.86799 * 119.99793 * 163.07074 * 24 22 21 27 27 H 1.48501 * 109.47015 * 90.00111 * 26 24 22 28 28 H 1.48503 * 109.47008 * 209.99917 * 26 24 22 29 29 H 1.48495 * 109.47344 * 330.00172 * 26 24 22 30 30 C 1.46927 * 118.73753 * 53.60966 * 21 20 19 31 31 H 1.09001 * 109.46505 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47250 * 299.99536 * 1 2 3 33 33 H 1.08999 * 109.47117 * 60.00310 * 1 2 3 34 34 H 0.96998 * 120.00273 * 95.00063 * 4 2 1 35 35 H 1.07992 * 127.24974 * 359.97438 * 8 7 5 36 36 H 1.09007 * 115.54857 * 179.30111 * 10 9 8 37 37 H 1.09005 * 117.49858 * 0.02562 * 11 10 9 38 38 H 1.08997 * 117.50188 * 145.01894 * 11 10 9 39 39 H 1.09005 * 117.49892 * 214.98031 * 12 10 9 40 40 H 1.09001 * 117.50210 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.47346 * 90.00334 * 14 13 9 42 42 H 1.09005 * 109.46804 * 209.99940 * 14 13 9 43 43 H 1.08995 * 109.47546 * 330.00274 * 14 13 9 44 44 H 1.09001 * 109.45854 * 298.70119 * 18 16 2 45 45 H 1.08994 * 109.46385 * 58.66456 * 18 16 2 46 46 H 1.09003 * 109.49439 * 181.31750 * 19 18 16 47 47 H 1.08998 * 109.49392 * 301.40764 * 19 18 16 48 48 H 1.09004 * 109.58634 * 185.57706 * 20 19 18 49 49 H 1.09000 * 109.58649 * 65.15355 * 20 19 18 50 50 H 0.96999 * 120.00068 * 180.02562 * 25 24 22 51 51 H 1.08996 * 109.59027 * 186.60748 * 30 21 20 52 52 H 1.09005 * 109.58876 * 66.17733 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3570 6 8 1.8583 1.1613 2.4116 7 6 2.6390 -0.7148 3.5631 8 6 2.8257 -0.1473 4.8460 9 6 3.2871 -1.1547 5.6235 10 6 3.6427 -1.0648 7.0853 11 6 2.8221 -0.1099 7.9545 12 6 4.2637 0.2422 7.5821 13 7 3.3682 -2.2555 4.8456 14 6 3.8255 -3.5709 5.3003 15 7 2.9818 -1.9846 3.6508 16 6 2.0400 -0.7212 -1.2493 17 1 3.1262 -0.8006 -1.2056 18 6 1.6354 0.0688 -2.4961 19 6 2.1733 -0.6345 -3.7445 20 6 1.5612 -2.0355 -3.8400 21 7 1.8220 -2.7522 -2.5842 22 6 2.4219 -3.9831 -2.5950 23 1 3.0106 -4.3043 -1.7484 24 6 2.2732 -4.8181 -3.6939 25 7 1.3128 -4.5940 -4.5655 26 14 3.4363 -6.2596 -3.9357 27 1 2.8826 -7.4609 -3.2607 28 1 3.5896 -6.5339 -5.3871 29 1 4.7612 -5.9302 -3.3515 30 6 1.4264 -2.1233 -1.3167 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 1.1524 35 1 2.6401 0.8745 5.1420 36 1 3.9877 -1.9920 7.5431 37 1 2.0248 0.4530 7.4693 38 1 2.6270 -0.4087 8.9844 39 1 5.0171 0.1750 8.3671 40 1 4.4155 1.0369 6.8517 41 1 2.9739 -4.1459 5.6642 42 1 4.2929 -4.1001 4.4698 43 1 4.5498 -3.4456 6.1051 44 1 0.5484 0.1271 -2.5521 45 1 2.0504 1.0751 -2.4390 46 1 1.9048 -0.0589 -4.6304 47 1 3.2582 -0.7152 -3.6775 48 1 2.0148 -2.5766 -4.6705 49 1 0.4857 -1.9544 -3.9980 50 1 1.2086 -5.1777 -5.3332 51 1 1.7911 -2.7221 -0.4822 52 1 0.3399 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025440231.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:51 Heat of formation + Delta-G solvation = 62.802631 kcal Electronic energy + Delta-G solvation = -30795.242934 eV Core-core repulsion = 26796.838142 eV Total energy + Delta-G solvation = -3998.404791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.75949 -40.94491 -39.41569 -38.12626 -36.68705 -34.76931 -34.43790 -32.53933 -32.25085 -31.34663 -29.57825 -28.36623 -27.22443 -25.65436 -24.51094 -24.02148 -23.67871 -23.22042 -22.00795 -21.49169 -20.55638 -20.06066 -18.77419 -18.48189 -17.57209 -17.33344 -16.92777 -16.81824 -16.09324 -15.97987 -15.70568 -15.68099 -15.33439 -15.10620 -14.96747 -14.71100 -14.68852 -14.09225 -13.96389 -13.80588 -13.55420 -13.44310 -13.31453 -13.04574 -12.83351 -12.76882 -12.69477 -12.39133 -12.30505 -12.07341 -12.00998 -12.00621 -11.96041 -11.71032 -11.52167 -11.38213 -11.33088 -11.11972 -11.03944 -10.51736 -10.26862 -9.97858 -9.76498 -8.64279 -7.86254 -5.31247 0.47811 0.98222 1.45141 1.47039 1.50951 1.56624 2.15596 2.32889 2.51058 3.04141 3.24307 3.28062 3.46629 3.57856 3.81755 3.91884 3.98760 3.99621 4.05671 4.09783 4.13364 4.34602 4.35260 4.39669 4.42082 4.46626 4.53763 4.63647 4.66107 4.69030 4.72234 4.83147 4.85651 4.88233 4.96229 5.03481 5.05002 5.14205 5.19324 5.20631 5.28369 5.28596 5.29518 5.34907 5.46336 5.50723 5.57992 5.68194 5.80057 5.80491 6.39510 6.42368 6.86175 7.13142 7.16189 7.87782 8.39621 9.19767 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.002607 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.471198 B =10739.331002 C =12559.126905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.085 0.915 4 N -0.704 5.704 5 C 0.603 3.397 6 O -0.568 6.568 7 C -0.041 4.041 8 C -0.199 4.199 9 C 0.056 3.944 10 C -0.106 4.106 11 C -0.158 4.158 12 C -0.158 4.158 13 N -0.274 5.274 14 C 0.071 3.929 15 N -0.277 5.277 16 C -0.097 4.097 17 H 0.062 0.938 18 C -0.097 4.097 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.261 4.261 23 H 0.064 0.936 24 C -0.051 4.051 25 N -0.933 5.933 26 Si 0.965 3.035 27 H -0.284 1.284 28 H -0.293 1.293 29 H -0.272 1.272 30 C 0.152 3.848 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.408 0.592 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.047 0.953 48 H 0.051 0.949 49 H -0.002 1.002 50 H 0.249 0.751 51 H 0.045 0.955 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 7.589 25.397 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.053 3.947 3 H 0.103 0.897 4 N -0.355 5.355 5 C 0.389 3.611 6 O -0.446 6.446 7 C -0.199 4.199 8 C -0.227 4.227 9 C -0.069 4.069 10 C -0.126 4.126 11 C -0.195 4.195 12 C -0.195 4.195 13 N -0.063 5.063 14 C -0.067 4.067 15 N -0.114 5.114 16 C -0.117 4.117 17 H 0.081 0.919 18 C -0.135 4.135 19 C -0.170 4.170 20 C 0.049 3.951 21 N -0.332 5.332 22 C -0.391 4.391 23 H 0.081 0.919 24 C -0.246 4.246 25 N -0.580 5.580 26 Si 0.793 3.207 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.197 1.197 30 C 0.027 3.973 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.244 0.756 35 H 0.177 0.823 36 H 0.162 0.838 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.146 0.854 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.016 0.984 50 H 0.058 0.942 51 H 0.063 0.937 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.284 7.193 24.654 26.220 hybrid contribution 0.278 -0.809 -0.406 0.947 sum 5.562 6.384 24.248 25.683 Atomic orbital electron populations 1.22204 0.94618 1.02349 1.02473 1.20966 0.94668 0.96428 0.82656 0.89665 1.46047 1.65649 1.14625 1.09142 1.17113 0.76658 0.85371 0.81968 1.90726 1.52608 1.16111 1.85180 1.21806 1.10331 0.91550 0.96215 1.21503 1.08720 1.01179 0.91328 1.20893 1.04322 0.86541 0.95094 1.20509 1.07968 0.98092 0.86022 1.23166 0.94740 1.00960 1.00658 1.23172 0.97043 0.95969 1.03365 1.45700 1.44411 1.11373 1.04785 1.22630 1.02792 0.78189 1.03091 1.73552 1.16683 1.16761 1.04426 1.21726 1.00004 0.96213 0.93783 0.91933 1.21418 1.01036 0.98160 0.92841 1.22019 0.99846 0.97018 0.98141 1.20625 0.95334 0.90215 0.88944 1.44279 1.70131 1.17273 1.01527 1.19463 1.23110 0.92948 1.03601 0.91878 1.25773 0.98927 1.00370 0.99537 1.70185 1.31929 1.40641 1.15207 0.85322 0.79296 0.79527 0.76582 1.21078 1.21879 1.19684 1.21084 0.96162 0.91951 0.88125 0.92432 0.92952 0.90066 0.75585 0.82280 0.83804 0.89269 0.85796 0.85775 0.89279 0.87999 0.88244 0.85443 0.91544 0.90528 0.90988 0.93394 0.93080 0.98427 0.94157 0.93660 0.95803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 8.76 71.98 0.63 -4.02 16 2 C 0.16 4.87 2.35 44.99 0.11 4.97 16 3 H 0.09 2.67 7.58 -2.39 -0.02 2.65 16 4 N -0.70 -22.37 5.01 -445.54 -2.23 -24.60 16 5 C 0.60 20.22 7.79 86.75 0.68 20.90 16 6 O -0.57 -21.44 16.59 -3.94 -0.07 -21.51 16 7 C -0.04 -1.23 7.13 42.46 0.30 -0.92 16 8 C -0.20 -5.02 9.86 22.41 0.22 -4.80 16 9 C 0.06 1.08 6.60 41.40 0.27 1.36 16 10 C -0.11 -1.12 5.93 -11.54 -0.07 -1.19 16 11 C -0.16 -1.43 10.05 30.59 0.31 -1.12 16 12 C -0.16 -1.42 10.05 30.59 0.31 -1.12 16 13 N -0.27 -5.59 3.70 -355.93 -1.32 -6.91 16 14 C 0.07 0.71 11.05 127.77 1.41 2.12 16 15 N -0.28 -7.73 11.67 -48.17 -0.56 -8.30 16 16 C -0.10 -3.31 2.27 -10.71 -0.02 -3.34 16 17 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 18 C -0.10 -3.11 4.89 30.62 0.15 -2.96 16 19 C -0.13 -4.95 6.08 30.67 0.19 -4.76 16 20 C 0.17 8.52 5.30 86.36 0.46 8.97 16 21 N -0.61 -30.90 2.99 -699.09 -2.09 -32.99 16 22 C -0.26 -14.53 9.58 84.04 0.81 -13.72 16 23 H 0.06 3.44 7.88 -2.91 -0.02 3.42 16 24 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 25 N -0.93 -55.76 11.20 21.65 0.24 -55.51 16 26 Si 0.96 45.27 29.59 68.60 2.03 47.30 16 27 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 28 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 29 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 30 C 0.15 6.32 5.26 86.36 0.45 6.78 16 31 H 0.06 1.78 6.23 -2.39 -0.01 1.76 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.16 6.60 -2.39 -0.02 2.14 16 34 H 0.41 13.00 7.01 -92.71 -0.65 12.35 16 35 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.14 0.70 7.18 -2.38 -0.02 0.68 16 37 H 0.09 1.07 7.94 -2.38 -0.02 1.05 16 38 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.12 0.58 8.14 -2.38 -0.02 0.57 16 40 H 0.09 1.07 7.97 -2.39 -0.02 1.05 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 42 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.13 0.39 7.13 -2.39 -0.02 0.38 16 44 H 0.07 2.08 6.63 -2.39 -0.02 2.07 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.05 2.83 6.06 -2.38 -0.01 2.82 16 49 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 51 H 0.04 1.87 6.75 -2.39 -0.02 1.85 16 52 H 0.02 1.02 6.06 -2.38 -0.01 1.00 16 Total: -1.00 -74.25 408.74 2.90 -71.35 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.28 Total: 26.47 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.61 Total: 4.69 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -5.96 Total: -128.31 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.07 Total: -21.51 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -74.25 2.90 -71.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440231.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.154 kcal (2) G-P(sol) polarization free energy of solvation -74.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds