Wall clock time and date at job start Wed Apr 1 2020 05:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47675 * 2 1 4 4 N 1.46507 * 109.47191 * 119.99996 * 2 1 3 5 5 C 1.34770 * 119.99940 * 274.99549 * 4 2 1 6 6 O 1.21577 * 120.00042 * 0.02562 * 5 4 2 7 7 C 1.47707 * 120.00141 * 180.02562 * 5 4 2 8 8 C 1.41644 * 126.49953 * 179.71599 * 7 5 4 9 9 C 1.34699 * 105.33584 * 179.83591 * 8 7 5 10 10 N 1.35500 * 107.71305 * 0.45611 * 9 8 7 11 11 N 1.28426 * 109.72021 * 359.65568 * 10 9 8 12 12 C 1.47000 * 123.90815 * 179.60937 * 10 9 8 13 13 C 1.53147 * 108.87914 * 342.33779 * 12 10 9 14 14 C 1.53153 * 109.59852 * 51.13363 * 13 12 10 15 15 C 1.50800 * 127.53988 * 180.17460 * 9 8 7 16 16 C 1.53007 * 109.47282 * 239.99811 * 2 1 3 17 17 H 1.09002 * 109.51963 * 300.08807 * 16 2 1 18 18 C 1.53042 * 109.49559 * 60.15863 * 16 2 1 19 19 C 1.53351 * 109.60803 * 181.32703 * 18 16 2 20 20 C 1.53189 * 109.14968 * 298.71733 * 19 18 16 21 21 N 1.46925 * 108.89498 * 54.57615 * 20 19 18 22 22 C 1.36933 * 120.63376 * 126.34355 * 21 20 19 23 23 H 1.08007 * 119.99785 * 332.55589 * 22 21 20 24 24 C 1.38811 * 120.00685 * 152.55685 * 22 21 20 25 25 N 1.31606 * 120.00547 * 159.32495 * 24 22 21 26 26 Si 1.86806 * 119.99505 * 339.32413 * 24 22 21 27 27 H 1.48501 * 109.46946 * 92.92636 * 26 24 22 28 28 H 1.48496 * 109.46962 * 212.93106 * 26 24 22 29 29 H 1.48503 * 109.47163 * 332.92869 * 26 24 22 30 30 C 1.46930 * 118.73896 * 306.32231 * 21 20 19 31 31 H 1.09002 * 109.46693 * 59.99900 * 1 2 3 32 32 H 1.08995 * 109.47090 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46560 * 300.00474 * 1 2 3 34 34 H 0.96999 * 119.99723 * 94.99723 * 4 2 1 35 35 H 1.08002 * 127.32768 * 0.02562 * 8 7 5 36 36 H 1.08996 * 109.56659 * 102.15675 * 12 10 9 37 37 H 1.08999 * 109.56683 * 222.51563 * 12 10 9 38 38 H 1.08995 * 109.44546 * 171.17488 * 13 12 10 39 39 H 1.09008 * 109.44711 * 291.11848 * 13 12 10 40 40 H 1.09000 * 109.54115 * 50.27228 * 14 13 12 41 41 H 1.08998 * 109.53868 * 170.53272 * 14 13 12 42 42 H 1.08999 * 109.71539 * 45.15253 * 15 9 8 43 43 H 1.09000 * 109.75154 * 284.53264 * 15 9 8 44 44 H 1.08996 * 109.46308 * 301.34320 * 18 16 2 45 45 H 1.09001 * 109.45926 * 61.31229 * 18 16 2 46 46 H 1.09002 * 109.68043 * 178.74829 * 19 18 16 47 47 H 1.09001 * 109.46879 * 58.55420 * 19 18 16 48 48 H 1.08999 * 109.58425 * 294.71399 * 20 19 18 49 49 H 1.09000 * 109.58811 * 174.43590 * 20 19 18 50 50 H 0.96999 * 120.00524 * 180.02562 * 25 24 22 51 51 H 1.08992 * 109.58650 * 173.39595 * 30 21 20 52 52 H 1.09001 * 109.58325 * 293.67528 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1472 -0.0183 2.3571 6 8 1.8576 1.1612 2.4118 7 6 2.6401 -0.7144 3.5630 8 6 2.8328 -0.1443 4.8453 9 6 3.2862 -1.1503 5.6178 10 7 3.3718 -2.2587 4.8432 11 7 2.9894 -1.9830 3.6486 12 6 3.8379 -3.5652 5.3297 13 6 4.5969 -3.3625 6.6443 14 6 3.7438 -2.5315 7.6072 15 6 3.6505 -1.0934 7.0801 16 6 2.0401 -0.7213 -1.2493 17 1 1.6759 -1.7487 -1.2508 18 6 1.5335 0.0020 -2.4992 19 6 2.0158 -0.7380 -3.7529 20 6 3.5474 -0.7382 -3.7782 21 7 4.0441 -1.3007 -2.5151 22 6 4.9306 -2.3443 -2.5168 23 1 4.9438 -3.0403 -3.3426 24 6 5.8124 -2.5079 -1.4572 25 7 6.3661 -3.6813 -1.2370 26 14 6.2131 -1.0623 -0.3440 27 1 5.2958 -1.0677 0.8238 28 1 7.6164 -1.1753 0.1282 29 1 6.0455 0.2054 -1.0991 30 6 3.5719 -0.7218 -1.2499 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 2.2490 -1.6318 1.1526 35 1 2.6515 0.8784 5.1413 36 1 2.9818 -4.2182 5.4993 37 1 4.5012 -4.0145 4.5906 38 1 4.8105 -4.3324 7.0933 39 1 5.5330 -2.8402 6.4461 40 1 2.7443 -2.9614 7.6725 41 1 4.2061 -2.5287 8.5942 42 1 2.8821 -0.5495 7.6295 43 1 4.6119 -0.5943 7.2011 44 1 0.4438 0.0252 -2.4889 45 1 1.9184 1.0217 -2.5097 46 1 1.6371 -0.2365 -4.6436 47 1 1.6521 -1.7653 -3.7308 48 1 3.9111 0.2831 -3.8916 49 1 3.8990 -1.3459 -4.6121 50 1 6.9819 -3.7957 -0.4963 51 1 3.9375 -1.3200 -0.4154 52 1 3.9397 0.3000 -1.1558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025450281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:34 Heat of formation + Delta-G solvation = 49.447153 kcal Electronic energy + Delta-G solvation = -31810.687296 eV Core-core repulsion = 27811.703368 eV Total energy + Delta-G solvation = -3998.983928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.80409 -39.57663 -37.99824 -36.82487 -35.18285 -33.21466 -33.04892 -31.60282 -30.62127 -30.08074 -28.87104 -28.73779 -25.41565 -24.89294 -23.83887 -22.95701 -22.40811 -22.05388 -20.40910 -20.22850 -19.54316 -18.92384 -17.08405 -16.80431 -16.74848 -16.23833 -15.76419 -15.36347 -14.94892 -14.59492 -14.48303 -14.26538 -14.12639 -13.91738 -13.80599 -13.59769 -13.41763 -13.19233 -12.98202 -12.76472 -12.67715 -12.33043 -12.15498 -12.04974 -11.56054 -11.53726 -11.46920 -11.39730 -11.30527 -11.16501 -10.70915 -10.69802 -10.45564 -10.35924 -10.04611 -9.94580 -9.74874 -9.61695 -9.38060 -9.09163 -8.94691 -8.71795 -8.55990 -6.92281 -5.92940 -3.27456 1.69756 2.12316 2.35556 3.39223 3.42561 3.52483 3.56909 3.65341 4.02273 4.23200 4.30246 4.41033 4.56521 4.70224 4.83712 4.84404 4.98698 5.11256 5.23536 5.23937 5.26122 5.30601 5.34352 5.39573 5.43733 5.44198 5.53691 5.55517 5.64311 5.69197 5.72408 5.73721 5.89416 5.96336 6.03746 6.10053 6.16161 6.23217 6.36006 6.38638 6.41531 6.43023 6.64323 6.67800 6.71091 6.73434 6.77829 6.86804 7.04224 7.72483 7.99700 8.03765 8.35409 8.47528 8.98073 9.75855 10.14777 11.22858 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.003735 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.660990 B = 7494.642178 C = 9171.503617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.086 0.914 4 N -0.707 5.707 5 C 0.607 3.393 6 O -0.542 6.542 7 C -0.017 4.017 8 C -0.177 4.177 9 C 0.008 3.992 10 N -0.280 5.280 11 N -0.251 5.251 12 C 0.119 3.881 13 C -0.137 4.137 14 C -0.126 4.126 15 C -0.051 4.051 16 C -0.112 4.112 17 H 0.078 0.922 18 C -0.102 4.102 19 C -0.134 4.134 20 C 0.146 3.854 21 N -0.606 5.606 22 C -0.258 4.258 23 H 0.086 0.914 24 C 0.027 3.973 25 N -0.908 5.908 26 Si 0.877 3.123 27 H -0.284 1.284 28 H -0.306 1.306 29 H -0.272 1.272 30 C 0.135 3.865 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.409 0.591 35 H 0.161 0.839 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.021 0.979 49 H 0.061 0.939 50 H 0.261 0.739 51 H 0.073 0.927 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 2.366 16.007 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.104 0.896 4 N -0.358 5.358 5 C 0.391 3.609 6 O -0.418 6.418 7 C -0.177 4.177 8 C -0.205 4.205 9 C -0.116 4.116 10 N -0.070 5.070 11 N -0.086 5.086 12 C -0.001 4.001 13 C -0.175 4.175 14 C -0.164 4.164 15 C -0.089 4.089 16 C -0.133 4.133 17 H 0.097 0.903 18 C -0.141 4.141 19 C -0.173 4.173 20 C 0.020 3.980 21 N -0.329 5.329 22 C -0.386 4.386 23 H 0.103 0.897 24 C -0.172 4.172 25 N -0.551 5.551 26 Si 0.707 3.293 27 H -0.212 1.212 28 H -0.234 1.234 29 H -0.198 1.198 30 C 0.009 3.991 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.178 0.822 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.039 0.961 49 H 0.080 0.920 50 H 0.071 0.929 51 H 0.091 0.909 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.141 1.983 15.482 18.088 hybrid contribution 0.492 0.898 1.108 1.509 sum -8.649 2.881 16.591 18.931 Atomic orbital electron populations 1.22195 0.95403 1.02044 1.02176 1.21080 0.93726 0.97464 0.83645 0.89564 1.45972 1.65966 1.14742 1.09074 1.16855 0.76980 0.85568 0.81463 1.90746 1.51358 1.14898 1.84751 1.21968 1.08840 0.90822 0.96069 1.21265 1.07332 1.00207 0.91687 1.21251 1.06915 0.87552 0.95859 1.45732 1.45914 1.09965 1.05379 1.73498 1.15079 1.17260 1.02733 1.22175 1.00338 0.80462 0.97100 1.21947 0.99376 1.02477 0.93708 1.21690 1.00816 0.94730 0.99160 1.20329 1.02898 0.97821 0.87860 1.21976 0.98902 0.99785 0.92588 0.90336 1.21505 0.99353 0.98917 0.94280 1.22047 0.98653 1.00296 0.96351 1.20948 0.91346 0.96451 0.89260 1.44349 1.50464 1.38680 0.99423 1.18928 1.10305 1.01422 1.07993 0.89677 1.25223 0.97414 0.96424 0.98131 1.69833 1.32978 1.21408 1.30888 0.87042 0.76385 0.84943 0.80889 1.21193 1.23442 1.19755 1.21329 0.90772 0.96865 0.90122 0.91287 0.92512 0.92466 0.75562 0.82175 0.88865 0.87771 0.88636 0.90289 0.91082 0.90112 0.89133 0.89545 0.92427 0.92422 0.92621 0.91991 0.96115 0.92043 0.92940 0.90937 0.95915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.14 37.16 0.34 -1.88 16 2 C 0.15 2.44 2.16 -67.92 -0.15 2.29 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 4 N -0.71 -12.72 4.47 -54.79 -0.25 -12.97 16 5 C 0.61 11.50 7.79 -12.39 -0.10 11.40 16 6 O -0.54 -11.13 16.59 5.30 0.09 -11.04 16 7 C -0.02 -0.29 7.13 -82.69 -0.59 -0.88 16 8 C -0.18 -2.64 10.75 -39.54 -0.43 -3.06 16 9 C 0.01 0.09 6.57 -82.18 -0.54 -0.45 16 10 N -0.28 -3.82 3.74 -56.71 -0.21 -4.03 16 11 N -0.25 -4.29 11.72 33.46 0.39 -3.90 16 12 C 0.12 1.11 7.17 -3.69 -0.03 1.08 16 13 C -0.14 -0.87 5.91 -26.58 -0.16 -1.03 16 14 C -0.13 -0.73 5.98 -26.42 -0.16 -0.89 16 15 C -0.05 -0.39 6.28 -27.61 -0.17 -0.56 16 16 C -0.11 -2.00 1.98 -90.50 -0.18 -2.18 16 17 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 18 C -0.10 -1.60 4.86 -26.53 -0.13 -1.73 16 19 C -0.13 -2.20 6.11 -26.45 -0.16 -2.36 16 20 C 0.15 2.93 6.50 -3.71 -0.02 2.91 16 21 N -0.61 -14.72 2.77 -172.33 -0.48 -15.20 16 22 C -0.26 -7.34 10.03 -15.06 -0.15 -7.49 16 23 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 24 C 0.03 0.79 5.23 -17.44 -0.09 0.70 16 25 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 26 Si 0.88 23.57 24.35 -169.99 -4.14 19.43 16 27 H -0.28 -7.56 6.62 56.52 0.37 -7.18 16 28 H -0.31 -8.37 7.11 56.52 0.40 -7.96 16 29 H -0.27 -7.34 6.64 56.52 0.38 -6.96 16 30 C 0.13 3.04 3.25 -3.71 -0.01 3.03 16 31 H 0.07 0.84 6.41 -51.93 -0.33 0.51 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.41 7.42 8.14 -40.82 -0.33 7.09 16 35 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.57 8.11 -51.92 -0.42 0.15 16 40 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.76 6.36 -51.93 -0.33 0.43 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 50 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 51 H 0.07 1.80 4.01 -51.93 -0.21 1.59 16 52 H 0.02 0.54 7.07 -51.93 -0.37 0.17 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -35.56 398.81 -9.28 -44.84 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.75 Total: 5.26 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.72 Total: -1.09 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.23 Total: -63.40 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.14 Total: 19.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.56 -9.28 -44.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025450281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.283 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds