Wall clock time and date at job start Wed Apr 1 2020 05:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47675 * 2 1 4 4 N 1.46507 * 109.47191 * 119.99996 * 2 1 3 5 5 C 1.34770 * 119.99940 * 274.99549 * 4 2 1 6 6 O 1.21577 * 120.00042 * 0.02562 * 5 4 2 7 7 C 1.47707 * 120.00141 * 180.02562 * 5 4 2 8 8 C 1.41644 * 126.49953 * 179.71599 * 7 5 4 9 9 C 1.34699 * 105.33584 * 179.83591 * 8 7 5 10 10 N 1.35500 * 107.71305 * 0.45611 * 9 8 7 11 11 N 1.28426 * 109.72021 * 359.65568 * 10 9 8 12 12 C 1.47000 * 123.90815 * 179.60937 * 10 9 8 13 13 C 1.53147 * 108.87914 * 342.33779 * 12 10 9 14 14 C 1.53153 * 109.59852 * 51.13363 * 13 12 10 15 15 C 1.50800 * 127.53988 * 180.17460 * 9 8 7 16 16 C 1.53007 * 109.47282 * 239.99811 * 2 1 3 17 17 H 1.09002 * 109.51963 * 300.08807 * 16 2 1 18 18 C 1.53042 * 109.49559 * 60.15863 * 16 2 1 19 19 C 1.53351 * 109.60803 * 181.32703 * 18 16 2 20 20 C 1.53189 * 109.14968 * 298.71733 * 19 18 16 21 21 N 1.46925 * 108.89498 * 54.57615 * 20 19 18 22 22 C 1.36933 * 120.63376 * 126.34355 * 21 20 19 23 23 H 1.08007 * 119.99785 * 332.55589 * 22 21 20 24 24 C 1.38811 * 120.00685 * 152.55685 * 22 21 20 25 25 N 1.31606 * 120.00547 * 159.32495 * 24 22 21 26 26 Si 1.86806 * 119.99505 * 339.32413 * 24 22 21 27 27 H 1.48501 * 109.46946 * 92.92636 * 26 24 22 28 28 H 1.48496 * 109.46962 * 212.93106 * 26 24 22 29 29 H 1.48503 * 109.47163 * 332.92869 * 26 24 22 30 30 C 1.46930 * 118.73896 * 306.32231 * 21 20 19 31 31 H 1.09002 * 109.46693 * 59.99900 * 1 2 3 32 32 H 1.08995 * 109.47090 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46560 * 300.00474 * 1 2 3 34 34 H 0.96999 * 119.99723 * 94.99723 * 4 2 1 35 35 H 1.08002 * 127.32768 * 0.02562 * 8 7 5 36 36 H 1.08996 * 109.56659 * 102.15675 * 12 10 9 37 37 H 1.08999 * 109.56683 * 222.51563 * 12 10 9 38 38 H 1.08995 * 109.44546 * 171.17488 * 13 12 10 39 39 H 1.09008 * 109.44711 * 291.11848 * 13 12 10 40 40 H 1.09000 * 109.54115 * 50.27228 * 14 13 12 41 41 H 1.08998 * 109.53868 * 170.53272 * 14 13 12 42 42 H 1.08999 * 109.71539 * 45.15253 * 15 9 8 43 43 H 1.09000 * 109.75154 * 284.53264 * 15 9 8 44 44 H 1.08996 * 109.46308 * 301.34320 * 18 16 2 45 45 H 1.09001 * 109.45926 * 61.31229 * 18 16 2 46 46 H 1.09002 * 109.68043 * 178.74829 * 19 18 16 47 47 H 1.09001 * 109.46879 * 58.55420 * 19 18 16 48 48 H 1.08999 * 109.58425 * 294.71399 * 20 19 18 49 49 H 1.09000 * 109.58811 * 174.43590 * 20 19 18 50 50 H 0.96999 * 120.00524 * 180.02562 * 25 24 22 51 51 H 1.08992 * 109.58650 * 173.39595 * 30 21 20 52 52 H 1.09001 * 109.58325 * 293.67528 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1472 -0.0183 2.3571 6 8 1.8576 1.1612 2.4118 7 6 2.6401 -0.7144 3.5630 8 6 2.8328 -0.1443 4.8453 9 6 3.2862 -1.1503 5.6178 10 7 3.3718 -2.2587 4.8432 11 7 2.9894 -1.9830 3.6486 12 6 3.8379 -3.5652 5.3297 13 6 4.5969 -3.3625 6.6443 14 6 3.7438 -2.5315 7.6072 15 6 3.6505 -1.0934 7.0801 16 6 2.0401 -0.7213 -1.2493 17 1 1.6759 -1.7487 -1.2508 18 6 1.5335 0.0020 -2.4992 19 6 2.0158 -0.7380 -3.7529 20 6 3.5474 -0.7382 -3.7782 21 7 4.0441 -1.3007 -2.5151 22 6 4.9306 -2.3443 -2.5168 23 1 4.9438 -3.0403 -3.3426 24 6 5.8124 -2.5079 -1.4572 25 7 6.3661 -3.6813 -1.2370 26 14 6.2131 -1.0623 -0.3440 27 1 5.2958 -1.0677 0.8238 28 1 7.6164 -1.1753 0.1282 29 1 6.0455 0.2054 -1.0991 30 6 3.5719 -0.7218 -1.2499 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 2.2490 -1.6318 1.1526 35 1 2.6515 0.8784 5.1413 36 1 2.9818 -4.2182 5.4993 37 1 4.5012 -4.0145 4.5906 38 1 4.8105 -4.3324 7.0933 39 1 5.5330 -2.8402 6.4461 40 1 2.7443 -2.9614 7.6725 41 1 4.2061 -2.5287 8.5942 42 1 2.8821 -0.5495 7.6295 43 1 4.6119 -0.5943 7.2011 44 1 0.4438 0.0252 -2.4889 45 1 1.9184 1.0217 -2.5097 46 1 1.6371 -0.2365 -4.6436 47 1 1.6521 -1.7653 -3.7308 48 1 3.9111 0.2831 -3.8916 49 1 3.8990 -1.3459 -4.6121 50 1 6.9819 -3.7957 -0.4963 51 1 3.9375 -1.3200 -0.4154 52 1 3.9397 0.3000 -1.1558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025450281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:32 Heat of formation + Delta-G solvation = 25.377903 kcal Electronic energy + Delta-G solvation = -31811.731017 eV Core-core repulsion = 27811.703368 eV Total energy + Delta-G solvation = -4000.027649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.87645 -41.01461 -39.55631 -37.55661 -36.76518 -34.87567 -34.11399 -33.23401 -32.30484 -31.24867 -30.18028 -29.67954 -27.16190 -26.04838 -24.95110 -24.35833 -23.89429 -23.05648 -21.78085 -21.57419 -20.91454 -20.06138 -18.84625 -18.16239 -17.87385 -17.45393 -17.14907 -17.09843 -16.14170 -15.91363 -15.59103 -15.41699 -15.34806 -15.14603 -15.05317 -14.82533 -14.72779 -14.64896 -14.56204 -14.12497 -13.94609 -13.73699 -13.64388 -13.33869 -12.92516 -12.80068 -12.72028 -12.57906 -12.27356 -12.15145 -12.01839 -11.97257 -11.91674 -11.73129 -11.67469 -11.59119 -11.44788 -11.26545 -11.15373 -10.70395 -10.32790 -10.02552 -9.99689 -8.95722 -8.24058 -5.52240 0.43175 1.05778 1.20332 1.27945 1.34936 1.42518 2.10368 2.28671 2.31297 2.97137 3.19399 3.28301 3.50781 3.65176 3.72895 3.75486 3.83620 3.89699 3.95540 4.20131 4.23294 4.26926 4.35595 4.36098 4.40224 4.45548 4.46985 4.59477 4.63094 4.68567 4.68933 4.78263 4.81210 4.84478 4.94581 4.96845 4.97358 4.99550 5.08667 5.10066 5.16321 5.20962 5.23382 5.25840 5.27059 5.40179 5.46982 5.59192 5.81589 5.82959 6.07796 6.32620 6.82516 6.87631 7.06209 7.58378 8.00471 8.95793 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.003735 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.660990 B = 7494.642178 C = 9171.503617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.146 3.854 3 H 0.073 0.927 4 N -0.709 5.709 5 C 0.602 3.398 6 O -0.567 6.567 7 C -0.050 4.050 8 C -0.201 4.201 9 C 0.024 3.976 10 N -0.279 5.279 11 N -0.284 5.284 12 C 0.104 3.896 13 C -0.131 4.131 14 C -0.121 4.121 15 C -0.052 4.052 16 C -0.099 4.099 17 H 0.074 0.926 18 C -0.100 4.100 19 C -0.124 4.124 20 C 0.136 3.864 21 N -0.620 5.620 22 C -0.242 4.242 23 H 0.061 0.939 24 C -0.019 4.019 25 N -0.948 5.948 26 Si 0.933 3.067 27 H -0.288 1.288 28 H -0.312 1.312 29 H -0.274 1.274 30 C 0.135 3.865 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.406 0.594 35 H 0.169 0.831 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.029 0.971 49 H 0.056 0.944 50 H 0.260 0.740 51 H 0.044 0.956 52 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.886 3.048 17.414 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.042 3.958 3 H 0.091 0.909 4 N -0.358 5.358 5 C 0.388 3.612 6 O -0.445 6.445 7 C -0.209 4.209 8 C -0.229 4.229 9 C -0.101 4.101 10 N -0.069 5.069 11 N -0.121 5.121 12 C -0.014 4.014 13 C -0.169 4.169 14 C -0.158 4.158 15 C -0.090 4.090 16 C -0.120 4.120 17 H 0.092 0.908 18 C -0.137 4.137 19 C -0.162 4.162 20 C 0.011 3.989 21 N -0.344 5.344 22 C -0.372 4.372 23 H 0.079 0.921 24 C -0.215 4.215 25 N -0.594 5.594 26 Si 0.765 3.235 27 H -0.216 1.216 28 H -0.242 1.242 29 H -0.199 1.199 30 C 0.010 3.990 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.241 0.759 35 H 0.186 0.814 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.074 0.926 48 H 0.047 0.953 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.063 0.937 52 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -10.854 2.685 16.860 20.231 hybrid contribution 1.033 0.625 0.633 1.363 sum -9.821 3.310 17.493 20.333 Atomic orbital electron populations 1.22113 0.92610 1.02892 1.03074 1.21153 0.95788 0.96279 0.82612 0.90863 1.46081 1.65782 1.14554 1.09404 1.17128 0.76619 0.85424 0.82078 1.90703 1.52712 1.15765 1.85295 1.22009 1.10586 0.91630 0.96640 1.21526 1.08754 1.01400 0.91200 1.21956 1.04221 0.86192 0.97709 1.46232 1.44541 1.11585 1.04577 1.73415 1.16481 1.17302 1.04896 1.22644 1.01310 0.79085 0.98372 1.22005 0.98481 1.04253 0.92139 1.21717 1.01191 0.92887 1.00039 1.20601 1.03981 0.99887 0.84528 1.21818 0.95115 1.00300 0.94722 0.90764 1.21552 1.01559 0.98477 0.92148 1.21952 0.95191 1.00701 0.98405 1.21218 0.94294 0.96316 0.87046 1.44530 1.50133 1.38143 1.01634 1.18937 1.10104 1.01622 1.06509 0.92082 1.25643 0.98223 0.97819 0.99789 1.69916 1.34572 1.22823 1.32115 0.86135 0.75379 0.82562 0.79428 1.21589 1.24159 1.19881 1.21253 0.94161 0.95187 0.88430 0.88699 0.91654 0.93199 0.75945 0.81391 0.87021 0.88862 0.85639 0.91120 0.90720 0.87227 0.87240 0.88358 0.88728 0.91880 0.88859 0.92587 0.95284 0.92516 0.93066 0.93748 0.97019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.14 71.98 0.66 -3.17 16 2 C 0.15 4.79 2.16 44.99 0.10 4.89 16 3 H 0.07 2.62 7.58 -2.39 -0.02 2.60 16 4 N -0.71 -26.17 4.47 -445.51 -1.99 -28.16 16 5 C 0.60 23.64 7.79 86.75 0.68 24.32 16 6 O -0.57 -23.97 16.59 -3.96 -0.07 -24.04 16 7 C -0.05 -1.83 7.13 42.48 0.30 -1.53 16 8 C -0.20 -6.08 10.75 22.30 0.24 -5.84 16 9 C 0.02 0.57 6.57 41.21 0.27 0.84 16 10 N -0.28 -7.59 3.74 -333.33 -1.25 -8.84 16 11 N -0.28 -10.09 11.72 -48.06 -0.56 -10.66 16 12 C 0.10 1.85 7.17 86.33 0.62 2.47 16 13 C -0.13 -1.32 5.91 30.69 0.18 -1.14 16 14 C -0.12 -0.96 5.98 30.79 0.18 -0.78 16 15 C -0.05 -0.66 6.28 30.03 0.19 -0.47 16 16 C -0.10 -3.43 1.98 -10.72 -0.02 -3.45 16 17 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 18 C -0.10 -2.77 4.86 30.73 0.15 -2.62 16 19 C -0.12 -3.65 6.11 30.78 0.19 -3.46 16 20 C 0.14 5.27 6.50 86.36 0.56 5.83 16 21 N -0.62 -30.20 2.77 -699.12 -1.94 -32.14 16 22 C -0.24 -14.07 10.03 84.03 0.84 -13.22 16 23 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 24 C -0.02 -1.17 5.23 84.86 0.44 -0.73 16 25 N -0.95 -60.57 13.97 21.65 0.30 -60.26 16 26 Si 0.93 50.90 24.35 68.60 1.67 52.57 16 27 H -0.29 -15.71 6.62 99.48 0.66 -15.05 16 28 H -0.31 -17.17 7.11 99.48 0.71 -16.46 16 29 H -0.27 -14.74 6.64 99.48 0.66 -14.08 16 30 C 0.13 6.12 3.25 86.36 0.28 6.40 16 31 H 0.09 1.94 6.41 -2.39 -0.02 1.92 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.41 15.39 8.14 -92.71 -0.75 14.63 16 35 H 0.17 4.57 8.06 -2.91 -0.02 4.54 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 0.86 8.11 -2.38 -0.02 0.85 16 40 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 41 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 2.02 6.36 -2.39 -0.02 2.00 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 50 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 51 H 0.04 2.26 4.01 -2.39 -0.01 2.25 16 52 H 0.01 0.56 7.07 -2.39 -0.02 0.55 16 Total: -1.00 -81.40 398.81 2.10 -79.30 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.07 Total: 23.90 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.86 Total: 8.34 kcal Atomic # 7 Polarization: -134.63 SS G_CDS: -5.44 Total: -140.06 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.07 Total: -24.04 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 1.67 Total: 52.57 kcal Total: -81.40 2.10 -79.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025450281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.675 kcal (2) G-P(sol) polarization free energy of solvation -81.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds