Wall clock time and date at job start Wed Apr 1 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46452 * 2 1 4 4 N 1.46495 * 109.47378 * 120.00259 * 2 1 3 5 5 C 1.34780 * 119.99723 * 275.00583 * 4 2 1 6 6 O 1.21597 * 120.00171 * 359.97438 * 5 4 2 7 7 C 1.47542 * 119.99686 * 180.02562 * 5 4 2 8 8 C 1.40357 * 120.47568 * 179.97438 * 7 5 4 9 9 C 1.36851 * 118.49673 * 179.97438 * 8 7 5 10 10 C 1.39399 * 119.37706 * 359.97438 * 9 8 7 11 11 N 1.38455 * 119.53829 * 180.02562 * 10 9 8 12 12 C 1.46500 * 119.99832 * 4.99784 * 11 10 9 13 13 C 1.46499 * 120.00069 * 185.00375 * 11 10 9 14 14 N 1.32605 * 120.92274 * 359.97438 * 10 9 8 15 15 C 1.31676 * 121.63386 * 359.74682 * 14 10 9 16 16 C 1.52993 * 109.47020 * 240.00149 * 2 1 3 17 17 H 1.09001 * 109.52635 * 299.91608 * 16 2 1 18 18 C 1.53042 * 109.50036 * 59.99989 * 16 2 1 19 19 C 1.53037 * 109.54229 * 181.31338 * 18 16 2 20 20 C 1.53190 * 109.31429 * 298.63453 * 19 18 16 21 21 N 1.46927 * 108.88959 * 54.56429 * 20 19 18 22 22 C 1.36933 * 120.63067 * 126.47209 * 21 20 19 23 23 H 1.07997 * 119.99962 * 331.90221 * 22 21 20 24 24 C 1.38810 * 120.00381 * 151.90646 * 22 21 20 25 25 N 1.31626 * 119.99638 * 343.18102 * 24 22 21 26 26 Si 1.86793 * 120.00463 * 163.17922 * 24 22 21 27 27 H 1.48508 * 109.46924 * 60.00059 * 26 24 22 28 28 H 1.48497 * 109.47413 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47362 * 300.00284 * 26 24 22 30 30 C 1.46956 * 118.71486 * 306.63619 * 21 20 19 31 31 H 1.08995 * 109.46909 * 299.99425 * 1 2 3 32 32 H 1.08997 * 109.47038 * 59.99750 * 1 2 3 33 33 H 1.09002 * 109.46860 * 179.97438 * 1 2 3 34 34 H 0.96997 * 120.00542 * 94.99730 * 4 2 1 35 35 H 1.08006 * 120.74698 * 359.97391 * 8 7 5 36 36 H 1.07998 * 120.30963 * 179.97438 * 9 8 7 37 37 H 1.08992 * 109.46908 * 90.00533 * 12 11 10 38 38 H 1.09005 * 109.46575 * 209.99990 * 12 11 10 39 39 H 1.08993 * 109.47184 * 329.99568 * 12 11 10 40 40 H 1.09001 * 109.47148 * 359.97438 * 13 11 10 41 41 H 1.08993 * 109.47671 * 119.99918 * 13 11 10 42 42 H 1.09001 * 109.46940 * 239.99857 * 13 11 10 43 43 H 1.08005 * 119.74092 * 180.26823 * 15 14 10 44 44 H 1.09003 * 109.46292 * 61.29441 * 18 16 2 45 45 H 1.09002 * 109.46170 * 301.33552 * 18 16 2 46 46 H 1.08999 * 109.49829 * 178.67714 * 19 18 16 47 47 H 1.09002 * 109.52361 * 58.60193 * 19 18 16 48 48 H 1.09000 * 109.58553 * 174.42171 * 20 19 18 49 49 H 1.08993 * 109.58353 * 294.70205 * 20 19 18 50 50 H 0.97000 * 119.99586 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.46921 * 293.57830 * 30 21 20 52 52 H 1.08999 * 109.59884 * 173.22017 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8582 1.1616 2.4117 7 6 2.6394 -0.7137 3.5616 8 6 2.7778 -0.0232 4.7757 9 6 3.2376 -0.7081 5.8676 10 6 3.5522 -2.0605 5.7440 11 7 4.0172 -2.7567 6.8467 12 6 4.0720 -2.1025 8.1563 13 6 4.4545 -4.1476 6.7038 14 7 3.4115 -2.6896 4.5852 15 6 2.9672 -2.0693 3.5120 16 6 2.0400 -0.7212 -1.2492 17 1 1.6784 -1.7495 -1.2494 18 6 1.5302 -0.0002 -2.4992 19 6 2.0126 -0.7397 -3.7492 20 6 3.5442 -0.7367 -3.7802 21 7 4.0467 -1.2950 -2.5175 22 6 4.9374 -2.3350 -2.5199 23 1 4.9440 -3.0384 -3.3394 24 6 5.8318 -2.4854 -1.4691 25 7 6.0612 -1.4799 -0.6512 26 14 6.7097 -4.1145 -1.2155 27 1 7.5154 -4.4355 -2.4211 28 1 7.6046 -4.0161 -0.0346 29 1 5.7077 -5.1870 -0.9899 30 6 3.5720 -0.7180 -1.2520 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 1.1526 35 1 2.5270 1.0249 4.8465 36 1 3.3556 -0.2055 6.8162 37 1 3.1302 -2.2612 8.6814 38 1 4.8893 -2.5261 8.7401 39 1 4.2375 -1.0336 8.0219 40 1 4.3411 -4.4593 5.6655 41 1 5.5011 -4.2314 6.9964 42 1 3.8462 -4.7872 7.3433 43 1 2.8603 -2.6127 2.5848 44 1 1.9125 1.0205 -2.5111 45 1 0.4405 0.0205 -2.4875 46 1 1.6297 -0.2392 -4.6385 47 1 1.6512 -1.7678 -3.7264 48 1 3.8940 -1.3457 -4.6138 49 1 3.9052 0.2850 -3.8975 50 1 6.6865 -1.5848 0.0829 51 1 3.9354 0.3056 -1.1605 52 1 3.9400 -1.3146 -0.4173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025465686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:41 Heat of formation + Delta-G solvation = 30.198308 kcal Electronic energy + Delta-G solvation = -31345.914599 eV Core-core repulsion = 27346.095978 eV Total energy + Delta-G solvation = -3999.818621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.62516 -39.30382 -37.77583 -36.54505 -35.04593 -33.07806 -32.57799 -31.69716 -30.28775 -29.65592 -28.59993 -28.47297 -25.94524 -25.14497 -23.50379 -23.34709 -22.13758 -21.89571 -20.47894 -20.08129 -19.08494 -17.96085 -17.10637 -16.84624 -16.55651 -15.58923 -15.48382 -15.05965 -14.91903 -14.65417 -14.41041 -14.13888 -13.80378 -13.66189 -13.43588 -13.19371 -13.12606 -13.09083 -12.82831 -12.63381 -12.56525 -12.41454 -12.31620 -12.13329 -12.03843 -11.88329 -11.34208 -11.01002 -10.85828 -10.66385 -10.41133 -10.21609 -10.14231 -10.03421 -9.92943 -9.85770 -9.84183 -9.54043 -9.41218 -9.24451 -8.65065 -8.44431 -7.71986 -6.63202 -5.76215 -3.19299 0.94578 1.34954 2.69312 3.17442 3.38352 3.45321 3.45607 3.53109 4.05039 4.32488 4.50340 4.72270 4.85089 4.93867 4.99711 5.05010 5.09731 5.15685 5.25339 5.34639 5.36800 5.37152 5.53370 5.57477 5.60894 5.62300 5.66259 5.73826 5.82462 5.86843 5.89200 6.10759 6.19322 6.20268 6.26473 6.36319 6.41655 6.47918 6.50497 6.53794 6.67816 6.70425 6.81954 6.91852 6.93418 7.05508 7.12132 7.38203 7.68781 7.80972 7.89403 7.99610 8.46872 8.58540 9.23509 9.87001 10.44773 11.31235 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.003603 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.744154 B = 7769.773854 C =10107.151106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.085 0.915 4 N -0.711 5.711 5 C 0.573 3.427 6 O -0.552 6.552 7 C -0.245 4.245 8 C 0.025 3.975 9 C -0.250 4.250 10 C 0.418 3.582 11 N -0.612 5.612 12 C 0.092 3.908 13 C 0.090 3.910 14 N -0.545 5.545 15 C 0.195 3.805 16 C -0.121 4.121 17 H 0.067 0.933 18 C -0.102 4.102 19 C -0.133 4.133 20 C 0.143 3.857 21 N -0.592 5.592 22 C -0.254 4.254 23 H 0.064 0.936 24 C 0.005 3.995 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.181 3.819 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.399 0.601 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.160 0.840 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.016 0.984 50 H 0.254 0.746 51 H 0.016 0.984 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.772 -0.865 13.793 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.103 0.897 4 N -0.361 5.361 5 C 0.360 3.640 6 O -0.431 6.431 7 C -0.253 4.253 8 C -0.001 4.001 9 C -0.275 4.275 10 C 0.183 3.817 11 N -0.325 5.325 12 C -0.051 4.051 13 C -0.053 4.053 14 N -0.262 5.262 15 C 0.035 3.965 16 C -0.142 4.142 17 H 0.086 0.914 18 C -0.140 4.140 19 C -0.172 4.172 20 C 0.017 3.983 21 N -0.314 5.314 22 C -0.384 4.384 23 H 0.081 0.919 24 C -0.194 4.194 25 N -0.543 5.543 26 Si 0.728 3.272 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.210 1.210 30 C 0.055 3.945 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.234 0.766 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.177 0.823 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.034 0.966 50 H 0.064 0.936 51 H 0.034 0.966 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.535 -1.008 14.082 16.497 hybrid contribution 0.549 -0.478 0.244 0.768 sum -7.985 -1.486 14.326 16.468 Atomic orbital electron populations 1.22213 0.96061 1.01694 1.01940 1.20971 0.92957 0.97582 0.83774 0.89698 1.45920 1.66648 1.14105 1.09423 1.17835 0.77101 0.86254 0.82764 1.90725 1.51634 1.15515 1.85268 1.20655 1.12759 0.96032 0.95845 1.21121 0.88947 1.00060 0.90013 1.21106 1.11516 0.93719 1.01139 1.18509 0.88257 0.88124 0.86833 1.46153 1.67417 1.13031 1.05870 1.21743 1.01779 0.98606 0.82967 1.21696 0.98477 0.80601 1.04551 1.67184 1.21210 1.39068 0.98772 1.22695 0.87898 0.90613 0.95274 1.22160 1.01338 0.98666 0.92040 0.91419 1.21439 0.98777 0.99037 0.94723 1.21993 0.99078 0.99829 0.96329 1.20917 0.91010 0.96351 0.90044 1.44026 1.49498 1.38454 0.99468 1.19124 1.10122 1.01856 1.07261 0.91853 1.25021 0.97050 0.97207 1.00113 1.70034 1.36711 1.28735 1.18779 0.86445 0.79346 0.84082 0.77366 1.20949 1.21684 1.20982 1.20768 0.86236 0.97215 0.90278 0.92703 0.91543 0.92803 0.76559 0.83868 0.84613 0.92791 0.90915 0.90789 0.88687 0.92810 0.92923 0.82285 0.92599 0.93095 0.93177 0.92482 0.93044 0.96619 0.93632 0.96573 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.13 37.16 0.34 -1.90 16 2 C 0.15 2.51 2.16 -67.93 -0.15 2.36 16 3 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 4 N -0.71 -11.59 4.43 -54.85 -0.24 -11.83 16 5 C 0.57 9.91 7.73 -12.47 -0.10 9.81 16 6 O -0.55 -10.95 16.07 5.28 0.08 -10.86 16 7 C -0.24 -3.77 5.89 -104.82 -0.62 -4.38 16 8 C 0.02 0.34 9.65 -39.29 -0.38 -0.04 16 9 C -0.25 -3.00 9.20 -39.65 -0.36 -3.37 16 10 C 0.42 5.51 7.36 -155.28 -1.14 4.37 16 11 N -0.61 -6.46 3.37 -189.71 -0.64 -7.10 16 12 C 0.09 0.62 10.31 59.85 0.62 1.24 16 13 C 0.09 0.84 10.71 59.85 0.64 1.48 16 14 N -0.55 -8.10 8.82 -12.14 -0.11 -8.20 16 15 C 0.19 2.89 10.71 -17.13 -0.18 2.71 16 16 C -0.12 -2.17 1.98 -90.50 -0.18 -2.35 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.10 -1.66 4.85 -26.69 -0.13 -1.79 16 19 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 20 C 0.14 3.00 6.51 -3.71 -0.02 2.98 16 21 N -0.59 -14.61 3.00 -172.30 -0.52 -15.13 16 22 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 23 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 24 C 0.00 0.14 4.92 -17.43 -0.09 0.05 16 25 N -0.90 -25.73 11.20 55.49 0.62 -25.11 16 26 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 C 0.18 4.17 4.34 -3.69 -0.02 4.15 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.84 6.40 -51.93 -0.33 0.51 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.40 6.08 6.48 -40.82 -0.26 5.81 16 35 H 0.14 1.84 7.73 -52.48 -0.41 1.43 16 36 H 0.14 1.22 5.99 -52.49 -0.31 0.90 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 39 H 0.07 0.45 5.95 -51.93 -0.31 0.14 16 40 H 0.09 1.08 6.80 -51.93 -0.35 0.72 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.16 2.15 6.41 -52.48 -0.34 1.81 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.71 6.36 -51.93 -0.33 0.38 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.09 2.22 5.58 -51.93 -0.29 1.93 16 LS Contribution 405.94 15.07 6.12 6.12 Total: -1.00 -32.77 405.94 -10.15 -42.91 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.36 Total: 6.93 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -2.07 Total: 5.86 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.89 Total: -67.38 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.77 -10.15 -42.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025465686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.110 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds