Wall clock time and date at job start Wed Apr 1 2020 05:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46973 * 2 1 4 4 N 1.46497 * 109.47193 * 120.00343 * 2 1 3 5 5 C 1.34775 * 120.00247 * 274.99879 * 4 2 1 6 6 O 1.21593 * 119.99884 * 0.02562 * 5 4 2 7 7 C 1.47540 * 120.00261 * 180.02562 * 5 4 2 8 8 C 1.40344 * 120.47806 * 179.97438 * 7 5 4 9 9 C 1.36859 * 118.49556 * 180.02562 * 8 7 5 10 10 C 1.39399 * 119.37709 * 359.97438 * 9 8 7 11 11 N 1.38455 * 119.53479 * 180.02562 * 10 9 8 12 12 C 1.46498 * 120.00141 * 4.99432 * 11 10 9 13 13 C 1.46503 * 119.99625 * 184.99857 * 11 10 9 14 14 N 1.32601 * 120.92160 * 359.74493 * 10 9 8 15 15 C 1.31675 * 121.63724 * 0.52381 * 14 10 9 16 16 C 1.52998 * 109.47016 * 240.00573 * 2 1 3 17 17 H 1.09001 * 109.49741 * 185.06355 * 16 2 1 18 18 C 1.53036 * 109.50077 * 65.00124 * 16 2 1 19 19 C 1.53040 * 109.54081 * 178.68460 * 18 16 2 20 20 C 1.53189 * 109.31362 * 61.36274 * 19 18 16 21 21 N 1.46921 * 108.77602 * 305.36283 * 20 19 18 22 22 C 1.36935 * 120.63568 * 233.58730 * 21 20 19 23 23 H 1.08006 * 120.00201 * 151.83316 * 22 21 20 24 24 C 1.38809 * 119.99838 * 331.83337 * 22 21 20 25 25 N 1.31620 * 120.00101 * 343.08013 * 24 22 21 26 26 Si 1.86807 * 119.99865 * 163.07870 * 24 22 21 27 27 H 1.48493 * 109.47191 * 90.00052 * 26 24 22 28 28 H 1.48503 * 109.46990 * 210.00445 * 26 24 22 29 29 H 1.48494 * 109.47045 * 329.99771 * 26 24 22 30 30 C 1.46931 * 118.73595 * 53.60948 * 21 20 19 31 31 H 1.08994 * 109.47144 * 299.99195 * 1 2 3 32 32 H 1.08997 * 109.47268 * 59.99763 * 1 2 3 33 33 H 1.09007 * 109.46926 * 179.97438 * 1 2 3 34 34 H 0.97008 * 120.00114 * 95.00263 * 4 2 1 35 35 H 1.08001 * 120.75420 * 359.97438 * 8 7 5 36 36 H 1.07993 * 120.30996 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.46764 * 90.00717 * 12 11 10 38 38 H 1.09004 * 109.46946 * 209.99897 * 12 11 10 39 39 H 1.08996 * 109.47443 * 330.00576 * 12 11 10 40 40 H 1.08997 * 109.47265 * 359.97438 * 13 11 10 41 41 H 1.09007 * 109.46804 * 119.99655 * 13 11 10 42 42 H 1.08997 * 109.47369 * 239.99693 * 13 11 10 43 43 H 1.07999 * 119.74402 * 179.75284 * 15 14 10 44 44 H 1.09010 * 109.45731 * 298.70431 * 18 16 2 45 45 H 1.08997 * 109.46435 * 58.67464 * 18 16 2 46 46 H 1.09001 * 109.49728 * 181.31674 * 19 18 16 47 47 H 1.08994 * 109.49841 * 301.37549 * 19 18 16 48 48 H 1.08998 * 109.58755 * 65.15605 * 20 19 18 49 49 H 1.09001 * 109.58515 * 185.58171 * 20 19 18 50 50 H 0.97003 * 119.99659 * 180.02562 * 25 24 22 51 51 H 1.09005 * 109.58504 * 186.60380 * 30 21 20 52 52 H 1.09008 * 109.58512 * 66.18071 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8575 1.1612 2.4119 7 6 2.6394 -0.7139 3.5616 8 6 2.7779 -0.0234 4.7756 9 6 3.2387 -0.7082 5.8673 10 6 3.5541 -2.0603 5.7433 11 7 4.0201 -2.7564 6.8458 12 6 4.0752 -2.1022 8.1554 13 6 4.4581 -4.1470 6.7025 14 7 3.4089 -2.6905 4.5857 15 6 2.9737 -2.0679 3.5102 16 6 2.0400 -0.7211 -1.2493 17 1 3.1262 -0.8006 -1.2056 18 6 1.6355 0.0688 -2.4960 19 6 2.1733 -0.6343 -3.7444 20 6 1.5612 -2.0353 -3.8401 21 7 1.8219 -2.7521 -2.5843 22 6 2.4218 -3.9830 -2.5951 23 1 3.0108 -4.3042 -1.7486 24 6 2.2729 -4.8180 -3.6939 25 7 1.3124 -4.5939 -4.5655 26 14 3.4357 -6.2599 -3.9356 27 1 2.8820 -7.4610 -3.2605 28 1 3.5889 -6.5343 -5.3870 29 1 4.7607 -5.9305 -3.3517 30 6 1.4264 -2.1232 -1.3167 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6319 1.1525 35 1 2.5272 1.0247 4.8465 36 1 3.3568 -0.2057 6.8159 37 1 3.1337 -2.2616 8.6810 38 1 4.8930 -2.5253 8.7388 39 1 4.2398 -1.0332 8.0210 40 1 4.3444 -4.4587 5.6643 41 1 5.5051 -4.2301 6.9946 42 1 3.8506 -4.7871 7.3422 43 1 2.8708 -2.6102 2.5819 44 1 0.5484 0.1273 -2.5521 45 1 2.0507 1.0750 -2.4390 46 1 1.9048 -0.0587 -4.6303 47 1 3.2582 -0.7146 -3.6778 48 1 0.4857 -1.9543 -3.9980 49 1 2.0148 -2.5764 -4.6705 50 1 1.2081 -5.1777 -5.3331 51 1 1.7911 -2.7221 -0.4822 52 1 0.3399 -2.0493 -1.2689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025465687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:46 Heat of formation + Delta-G solvation = 32.065725 kcal Electronic energy + Delta-G solvation = -30724.557907 eV Core-core repulsion = 26724.820263 eV Total energy + Delta-G solvation = -3999.737644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.83302 -39.53853 -37.97087 -36.71562 -35.15969 -33.07805 -32.77109 -31.61105 -30.43621 -30.15039 -28.63298 -28.03167 -26.09924 -25.28791 -23.91646 -23.55855 -22.43043 -22.00777 -20.69017 -20.09973 -18.74042 -18.10547 -17.36162 -16.93658 -16.54831 -15.74963 -15.59335 -15.22143 -14.89034 -14.88784 -14.60168 -14.37040 -14.12335 -13.77653 -13.59676 -13.41496 -13.29497 -13.05950 -12.96652 -12.78721 -12.49450 -12.43960 -12.32606 -12.23888 -12.19418 -11.77126 -11.58058 -10.98581 -10.88733 -10.54177 -10.46045 -10.32443 -10.18943 -10.14958 -10.06093 -10.00996 -9.85040 -9.61603 -9.45611 -9.37357 -8.87694 -8.45238 -7.90186 -6.64569 -5.78423 -3.20914 0.73333 1.14915 2.52992 2.95242 3.30855 3.37326 3.44719 3.46812 3.83236 4.13928 4.48997 4.55342 4.68254 4.74049 4.83649 4.86659 4.97110 5.07681 5.11606 5.21147 5.24231 5.27106 5.42053 5.42695 5.47029 5.59349 5.61058 5.70130 5.72706 5.75498 5.89921 5.99475 6.05986 6.19730 6.22615 6.26609 6.29253 6.38784 6.50590 6.53664 6.60939 6.69468 6.73604 6.81932 6.89639 6.94694 7.01365 7.41886 7.66522 7.68837 7.79405 7.80083 8.35082 8.45451 9.21699 9.85403 10.42279 11.29808 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.002745 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.984654 B =10198.677991 C =12519.407868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.082 0.918 4 N -0.717 5.717 5 C 0.570 3.430 6 O -0.550 6.550 7 C -0.250 4.250 8 C 0.025 3.975 9 C -0.250 4.250 10 C 0.419 3.581 11 N -0.611 5.611 12 C 0.091 3.909 13 C 0.089 3.911 14 N -0.545 5.545 15 C 0.193 3.807 16 C -0.113 4.113 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.279 1.279 30 C 0.151 3.849 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.161 0.839 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.017 0.983 49 H 0.085 0.915 50 H 0.253 0.747 51 H 0.046 0.954 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.938 7.374 21.573 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.100 0.900 4 N -0.368 5.368 5 C 0.357 3.643 6 O -0.429 6.429 7 C -0.259 4.259 8 C -0.001 4.001 9 C -0.275 4.275 10 C 0.184 3.816 11 N -0.323 5.323 12 C -0.052 4.052 13 C -0.054 4.054 14 N -0.262 5.262 15 C 0.033 3.967 16 C -0.134 4.134 17 H 0.090 0.910 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.382 4.382 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.024 3.976 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.236 0.764 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.178 0.822 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.035 0.965 49 H 0.103 0.897 50 H 0.063 0.937 51 H 0.065 0.935 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.976 7.100 21.582 23.065 hybrid contribution 0.484 -0.460 -0.117 0.677 sum 4.460 6.640 21.465 22.907 Atomic orbital electron populations 1.22260 0.95432 1.02733 1.01866 1.21029 0.94157 0.96743 0.83419 0.89967 1.46101 1.66845 1.14238 1.09657 1.17902 0.77287 0.86322 0.82761 1.90740 1.51419 1.15645 1.85131 1.20661 1.13114 0.96174 0.95924 1.21132 0.88805 1.00143 0.89998 1.21137 1.11381 0.93783 1.01172 1.18526 0.88085 0.88094 0.86878 1.46196 1.67075 1.13108 1.05892 1.21768 1.01982 0.98549 0.82914 1.21721 0.98532 0.80528 1.04643 1.67203 1.21492 1.38775 0.98748 1.22731 0.88127 0.90423 0.95465 1.21960 1.00933 0.98021 0.92511 0.90951 1.21417 1.00515 0.97206 0.94694 1.22180 1.00598 0.99589 0.95794 1.20782 0.96580 0.88008 0.90203 1.44016 1.69910 1.17448 0.99938 1.19141 1.23401 0.92006 1.03701 0.91808 1.25031 0.97393 0.97628 0.99514 1.70037 1.30284 1.39498 1.14765 0.86337 0.81022 0.82570 0.77090 1.21405 1.21605 1.20490 1.21003 0.96210 0.90352 0.89989 0.92877 0.91443 0.91581 0.76413 0.83826 0.84508 0.92640 0.90802 0.90780 0.88646 0.92739 0.92741 0.82168 0.92234 0.93542 0.93269 0.92824 0.96459 0.89650 0.93662 0.93529 0.95599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.76 37.16 0.33 -2.02 16 2 C 0.15 2.22 2.35 -67.93 -0.16 2.06 16 3 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 4 N -0.72 -9.86 4.97 -54.85 -0.27 -10.13 16 5 C 0.57 8.29 7.73 -12.47 -0.10 8.19 16 6 O -0.55 -9.54 16.07 5.28 0.08 -9.46 16 7 C -0.25 -3.16 5.89 -104.82 -0.62 -3.77 16 8 C 0.03 0.28 9.65 -39.29 -0.38 -0.10 16 9 C -0.25 -2.43 9.20 -39.65 -0.36 -2.80 16 10 C 0.42 4.57 7.36 -155.28 -1.14 3.42 16 11 N -0.61 -5.23 3.37 -189.70 -0.64 -5.87 16 12 C 0.09 0.46 10.31 59.85 0.62 1.08 16 13 C 0.09 0.66 10.71 59.85 0.64 1.31 16 14 N -0.55 -6.72 8.82 -12.14 -0.11 -6.82 16 15 C 0.19 2.30 10.71 -17.12 -0.18 2.12 16 16 C -0.11 -1.87 2.27 -90.50 -0.21 -2.08 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.10 -1.65 4.89 -26.69 -0.13 -1.78 16 19 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 20 C 0.17 3.98 5.30 -3.72 -0.02 3.96 16 21 N -0.59 -14.28 2.99 -172.32 -0.52 -14.80 16 22 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 23 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 24 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 25 N -0.90 -25.85 11.20 55.49 0.62 -25.23 16 26 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 C 0.15 2.95 5.26 -3.71 -0.02 2.93 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.92 6.60 -51.93 -0.34 0.57 16 33 H 0.07 0.97 6.23 -51.92 -0.32 0.64 16 34 H 0.40 5.03 5.33 -40.82 -0.22 4.81 16 35 H 0.14 1.51 7.73 -52.49 -0.41 1.10 16 36 H 0.14 0.94 5.99 -52.49 -0.31 0.63 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 39 H 0.07 0.31 5.95 -51.93 -0.31 0.00 16 40 H 0.09 0.88 6.80 -51.93 -0.35 0.53 16 41 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.16 1.68 6.41 -52.49 -0.34 1.34 16 44 H 0.06 0.96 6.63 -51.92 -0.34 0.62 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 50 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.05 0.87 6.75 -51.93 -0.35 0.52 16 52 H 0.03 0.52 6.06 -51.92 -0.31 0.21 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -32.47 400.95 -10.04 -42.50 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.09 Total: 4.60 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.13 Total: 2.79 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.91 Total: -62.85 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.47 -10.04 -42.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025465687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.570 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds