Wall clock time and date at job start Wed Apr 1 2020 05:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46973 * 2 1 4 4 N 1.46497 * 109.47193 * 120.00343 * 2 1 3 5 5 C 1.34775 * 120.00247 * 274.99879 * 4 2 1 6 6 O 1.21593 * 119.99884 * 0.02562 * 5 4 2 7 7 C 1.47540 * 120.00261 * 180.02562 * 5 4 2 8 8 C 1.40344 * 120.47806 * 179.97438 * 7 5 4 9 9 C 1.36859 * 118.49556 * 180.02562 * 8 7 5 10 10 C 1.39399 * 119.37709 * 359.97438 * 9 8 7 11 11 N 1.38455 * 119.53479 * 180.02562 * 10 9 8 12 12 C 1.46498 * 120.00141 * 4.99432 * 11 10 9 13 13 C 1.46503 * 119.99625 * 184.99857 * 11 10 9 14 14 N 1.32601 * 120.92160 * 359.74493 * 10 9 8 15 15 C 1.31675 * 121.63724 * 0.52381 * 14 10 9 16 16 C 1.52998 * 109.47016 * 240.00573 * 2 1 3 17 17 H 1.09001 * 109.49741 * 185.06355 * 16 2 1 18 18 C 1.53036 * 109.50077 * 65.00124 * 16 2 1 19 19 C 1.53040 * 109.54081 * 178.68460 * 18 16 2 20 20 C 1.53189 * 109.31362 * 61.36274 * 19 18 16 21 21 N 1.46921 * 108.77602 * 305.36283 * 20 19 18 22 22 C 1.36935 * 120.63568 * 233.58730 * 21 20 19 23 23 H 1.08006 * 120.00201 * 151.83316 * 22 21 20 24 24 C 1.38809 * 119.99838 * 331.83337 * 22 21 20 25 25 N 1.31620 * 120.00101 * 343.08013 * 24 22 21 26 26 Si 1.86807 * 119.99865 * 163.07870 * 24 22 21 27 27 H 1.48493 * 109.47191 * 90.00052 * 26 24 22 28 28 H 1.48503 * 109.46990 * 210.00445 * 26 24 22 29 29 H 1.48494 * 109.47045 * 329.99771 * 26 24 22 30 30 C 1.46931 * 118.73595 * 53.60948 * 21 20 19 31 31 H 1.08994 * 109.47144 * 299.99195 * 1 2 3 32 32 H 1.08997 * 109.47268 * 59.99763 * 1 2 3 33 33 H 1.09007 * 109.46926 * 179.97438 * 1 2 3 34 34 H 0.97008 * 120.00114 * 95.00263 * 4 2 1 35 35 H 1.08001 * 120.75420 * 359.97438 * 8 7 5 36 36 H 1.07993 * 120.30996 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.46764 * 90.00717 * 12 11 10 38 38 H 1.09004 * 109.46946 * 209.99897 * 12 11 10 39 39 H 1.08996 * 109.47443 * 330.00576 * 12 11 10 40 40 H 1.08997 * 109.47265 * 359.97438 * 13 11 10 41 41 H 1.09007 * 109.46804 * 119.99655 * 13 11 10 42 42 H 1.08997 * 109.47369 * 239.99693 * 13 11 10 43 43 H 1.07999 * 119.74402 * 179.75284 * 15 14 10 44 44 H 1.09010 * 109.45731 * 298.70431 * 18 16 2 45 45 H 1.08997 * 109.46435 * 58.67464 * 18 16 2 46 46 H 1.09001 * 109.49728 * 181.31674 * 19 18 16 47 47 H 1.08994 * 109.49841 * 301.37549 * 19 18 16 48 48 H 1.08998 * 109.58755 * 65.15605 * 20 19 18 49 49 H 1.09001 * 109.58515 * 185.58171 * 20 19 18 50 50 H 0.97003 * 119.99659 * 180.02562 * 25 24 22 51 51 H 1.09005 * 109.58504 * 186.60380 * 30 21 20 52 52 H 1.09008 * 109.58512 * 66.18071 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8575 1.1612 2.4119 7 6 2.6394 -0.7139 3.5616 8 6 2.7779 -0.0234 4.7756 9 6 3.2387 -0.7082 5.8673 10 6 3.5541 -2.0603 5.7433 11 7 4.0201 -2.7564 6.8458 12 6 4.0752 -2.1022 8.1554 13 6 4.4581 -4.1470 6.7025 14 7 3.4089 -2.6905 4.5857 15 6 2.9737 -2.0679 3.5102 16 6 2.0400 -0.7211 -1.2493 17 1 3.1262 -0.8006 -1.2056 18 6 1.6355 0.0688 -2.4960 19 6 2.1733 -0.6343 -3.7444 20 6 1.5612 -2.0353 -3.8401 21 7 1.8219 -2.7521 -2.5843 22 6 2.4218 -3.9830 -2.5951 23 1 3.0108 -4.3042 -1.7486 24 6 2.2729 -4.8180 -3.6939 25 7 1.3124 -4.5939 -4.5655 26 14 3.4357 -6.2599 -3.9356 27 1 2.8820 -7.4610 -3.2605 28 1 3.5889 -6.5343 -5.3870 29 1 4.7607 -5.9305 -3.3517 30 6 1.4264 -2.1232 -1.3167 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6319 1.1525 35 1 2.5272 1.0247 4.8465 36 1 3.3568 -0.2057 6.8159 37 1 3.1337 -2.2616 8.6810 38 1 4.8930 -2.5253 8.7388 39 1 4.2398 -1.0332 8.0210 40 1 4.3444 -4.4587 5.6643 41 1 5.5051 -4.2301 6.9946 42 1 3.8506 -4.7871 7.3422 43 1 2.8708 -2.6102 2.5819 44 1 0.5484 0.1273 -2.5521 45 1 2.0507 1.0750 -2.4390 46 1 1.9048 -0.0587 -4.6303 47 1 3.2582 -0.7146 -3.6778 48 1 0.4857 -1.9543 -3.9980 49 1 2.0148 -2.5764 -4.6705 50 1 1.2081 -5.1777 -5.3331 51 1 1.7911 -2.7221 -0.4822 52 1 0.3399 -2.0493 -1.2689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025465687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:45 Heat of formation + Delta-G solvation = 13.250909 kcal Electronic energy + Delta-G solvation = -30725.373779 eV Core-core repulsion = 26724.820263 eV Total energy + Delta-G solvation = -4000.553515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.73894 -40.65680 -39.37616 -37.45256 -36.64134 -34.69307 -33.61495 -32.88696 -32.25107 -31.20187 -29.41290 -29.13688 -27.19452 -26.89090 -25.17633 -24.39203 -23.89148 -23.20674 -22.02494 -21.25727 -20.17007 -19.10618 -18.59009 -18.16090 -17.72099 -16.82864 -16.67441 -16.40207 -16.13496 -15.96009 -15.71692 -15.67863 -15.34903 -15.09627 -14.87303 -14.68329 -14.37711 -14.15930 -14.02407 -13.91713 -13.72087 -13.55555 -13.33004 -13.27289 -13.01061 -12.99042 -12.80524 -12.74539 -12.66177 -12.27539 -12.01654 -11.93940 -11.66483 -11.47710 -11.30821 -11.13782 -11.06428 -10.99928 -10.84799 -10.49004 -10.41223 -10.05926 -8.62007 -8.61383 -7.83765 -5.28438 -0.15749 0.32575 1.47693 1.49759 1.58723 1.90815 1.92417 2.21301 2.53416 2.92921 3.31153 3.37089 3.62317 3.79810 3.88487 3.94081 3.97158 4.03083 4.07559 4.13154 4.30572 4.38496 4.46095 4.48321 4.50593 4.52455 4.62592 4.69613 4.73279 4.76785 4.86865 4.88946 4.92795 4.92951 4.99485 5.00733 5.07288 5.16450 5.21890 5.24957 5.32855 5.38274 5.43121 5.51046 5.56595 5.62237 5.71448 5.82551 5.89165 6.22334 6.42702 6.56406 6.98783 7.18836 7.23981 7.90911 8.42505 9.22299 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.002745 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.984654 B =10198.677991 C =12519.407868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 H 0.082 0.918 4 N -0.714 5.714 5 C 0.572 3.428 6 O -0.582 6.582 7 C -0.268 4.268 8 C 0.019 3.981 9 C -0.242 4.242 10 C 0.409 3.591 11 N -0.611 5.611 12 C 0.083 3.917 13 C 0.085 3.915 14 N -0.566 5.566 15 C 0.191 3.809 16 C -0.098 4.098 17 H 0.066 0.934 18 C -0.097 4.097 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.259 4.259 23 H 0.068 0.932 24 C -0.051 4.051 25 N -0.935 5.935 26 Si 0.962 3.038 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.271 1.271 30 C 0.150 3.850 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.405 0.595 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.167 0.833 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.048 0.952 48 H -0.004 1.004 49 H 0.049 0.951 50 H 0.248 0.752 51 H 0.052 0.948 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 8.093 24.029 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.100 0.900 4 N -0.365 5.365 5 C 0.362 3.638 6 O -0.463 6.463 7 C -0.277 4.277 8 C -0.007 4.007 9 C -0.266 4.266 10 C 0.172 3.828 11 N -0.321 5.321 12 C -0.059 4.059 13 C -0.057 4.057 14 N -0.284 5.284 15 C 0.031 3.969 16 C -0.118 4.118 17 H 0.084 0.916 18 C -0.135 4.135 19 C -0.170 4.170 20 C 0.049 3.951 21 N -0.332 5.332 22 C -0.389 4.389 23 H 0.086 0.914 24 C -0.246 4.246 25 N -0.581 5.581 26 Si 0.791 3.209 27 H -0.212 1.212 28 H -0.222 1.222 29 H -0.196 1.196 30 C 0.025 3.975 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.242 0.758 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.184 0.816 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.014 0.986 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.071 0.929 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.061 7.813 24.097 25.832 hybrid contribution 0.165 -0.729 -0.735 1.048 sum 5.226 7.084 23.362 24.965 Atomic orbital electron populations 1.22203 0.94922 1.02370 1.02201 1.20859 0.94390 0.96346 0.82854 0.90035 1.46050 1.66629 1.14452 1.09374 1.18149 0.76567 0.85924 0.83207 1.90715 1.53028 1.16940 1.85640 1.20542 1.14900 0.96505 0.95721 1.21274 0.88928 1.00468 0.90000 1.21383 1.10055 0.93301 1.01897 1.18891 0.87901 0.88864 0.87126 1.46552 1.65745 1.13450 1.06370 1.22037 1.03298 0.99126 0.81405 1.21785 0.99843 0.80358 1.03728 1.67234 1.22447 1.39344 0.99424 1.22816 0.87959 0.90286 0.95873 1.21736 1.00194 0.96188 0.93698 0.91598 1.21413 1.00901 0.98150 0.93071 1.22013 0.99879 0.97015 0.98119 1.20608 0.95238 0.90202 0.89089 1.44276 1.70120 1.17224 1.01557 1.19500 1.22969 0.92805 1.03609 0.91412 1.25753 0.98885 1.00337 0.99667 1.70189 1.32021 1.40639 1.15256 0.85354 0.79446 0.79676 0.76445 1.21178 1.22185 1.19557 1.21130 0.96233 0.91945 0.88209 0.93050 0.90598 0.92228 0.75786 0.83387 0.81517 0.91755 0.88849 0.89746 0.90724 0.91073 0.91412 0.81570 0.91753 0.90743 0.91294 0.93323 0.98570 0.93210 0.94268 0.92929 0.95835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 8.76 71.98 0.63 -3.70 16 2 C 0.16 4.50 2.35 44.99 0.11 4.61 16 3 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 4 N -0.71 -19.13 4.97 -445.70 -2.21 -21.34 16 5 C 0.57 16.37 7.73 86.70 0.67 17.04 16 6 O -0.58 -19.88 16.07 -4.01 -0.06 -19.95 16 7 C -0.27 -6.62 5.89 -19.99 -0.12 -6.73 16 8 C 0.02 0.41 9.65 22.46 0.22 0.62 16 9 C -0.24 -4.22 9.20 22.23 0.20 -4.01 16 10 C 0.41 8.25 7.36 133.25 0.98 9.23 16 11 N -0.61 -9.06 3.37 -754.09 -2.54 -11.60 16 12 C 0.08 0.57 10.31 127.77 1.32 1.89 16 13 C 0.09 1.13 10.71 127.77 1.37 2.50 16 14 N -0.57 -13.58 8.82 -192.32 -1.70 -15.28 16 15 C 0.19 4.50 10.71 85.04 0.91 5.41 16 16 C -0.10 -3.10 2.27 -10.72 -0.02 -3.12 16 17 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 18 C -0.10 -3.01 4.89 30.62 0.15 -2.86 16 19 C -0.13 -4.82 6.08 30.67 0.19 -4.63 16 20 C 0.17 8.32 5.30 86.36 0.46 8.78 16 21 N -0.61 -29.71 2.99 -699.10 -2.09 -31.81 16 22 C -0.26 -13.93 9.58 84.03 0.81 -13.12 16 23 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 24 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 25 N -0.93 -55.19 11.20 21.65 0.24 -54.95 16 26 Si 0.96 44.64 29.59 68.60 2.03 46.67 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 28 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 29 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 30 C 0.15 5.81 5.26 86.36 0.45 6.26 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.93 6.60 -2.39 -0.02 1.91 16 33 H 0.06 1.69 6.23 -2.38 -0.01 1.68 16 34 H 0.41 9.98 5.33 -92.70 -0.49 9.48 16 35 H 0.15 2.95 7.73 -2.91 -0.02 2.93 16 36 H 0.17 1.77 5.99 -2.91 -0.02 1.75 16 37 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.09 0.31 8.07 -2.39 -0.02 0.29 16 39 H 0.08 0.42 5.95 -2.39 -0.01 0.40 16 40 H 0.07 1.32 6.80 -2.39 -0.02 1.31 16 41 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.17 3.47 6.41 -2.91 -0.02 3.45 16 44 H 0.06 1.95 6.63 -2.38 -0.02 1.94 16 45 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.05 2.72 6.06 -2.39 -0.01 2.70 16 50 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 51 H 0.05 1.94 6.75 -2.38 -0.02 1.92 16 52 H 0.02 0.94 6.06 -2.38 -0.01 0.93 16 Total: -1.00 -70.95 400.95 2.84 -68.12 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.44 Total: 24.38 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 8.73 Total: 15.75 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -8.30 Total: -134.97 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.06 Total: -19.95 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -70.95 2.84 -68.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025465687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.369 kcal (2) G-P(sol) polarization free energy of solvation -70.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds