Wall clock time and date at job start Wed Apr 1 2020 05:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.46465 * 2 1 4 4 N 1.46499 * 109.46899 * 239.99781 * 2 1 3 5 5 C 1.34781 * 119.99884 * 85.00014 * 4 2 1 6 6 O 1.21590 * 119.99744 * 359.97438 * 5 4 2 7 7 C 1.47541 * 119.99529 * 179.97438 * 5 4 2 8 8 C 1.40352 * 120.46866 * 180.02562 * 7 5 4 9 9 C 1.36859 * 118.49062 * 180.02562 * 8 7 5 10 10 C 1.39396 * 119.37684 * 359.97438 * 9 8 7 11 11 N 1.38465 * 119.53712 * 179.97438 * 10 9 8 12 12 C 1.46494 * 119.99825 * 13.00305 * 11 10 9 13 13 C 1.46498 * 119.99915 * 192.99577 * 11 10 9 14 14 N 1.32607 * 120.92543 * 0.02562 * 10 9 8 15 15 C 1.31671 * 121.63342 * 0.02562 * 14 10 9 16 16 C 1.53001 * 109.47219 * 119.99635 * 2 1 3 17 17 H 1.08994 * 109.49615 * 179.97438 * 16 2 1 18 18 C 1.53044 * 109.49620 * 300.00179 * 16 2 1 19 19 C 1.53045 * 109.53629 * 181.31614 * 18 16 2 20 20 C 1.53194 * 109.31276 * 298.63712 * 19 18 16 21 21 N 1.46924 * 108.77759 * 54.63068 * 20 19 18 22 22 C 1.36938 * 120.62778 * 126.41676 * 21 20 19 23 23 H 1.08003 * 119.99630 * 205.83946 * 22 21 20 24 24 C 1.38808 * 120.00213 * 25.83600 * 22 21 20 25 25 N 1.31613 * 119.99813 * 19.07478 * 24 22 21 26 26 Si 1.86795 * 120.00002 * 199.07313 * 24 22 21 27 27 H 1.48501 * 109.47172 * 60.00365 * 26 24 22 28 28 H 1.48508 * 109.47212 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47255 * 300.00101 * 26 24 22 30 30 C 1.46931 * 118.74061 * 306.39534 * 21 20 19 31 31 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46691 * 299.99911 * 1 2 3 33 33 H 1.09000 * 109.46823 * 60.00308 * 1 2 3 34 34 H 0.96999 * 120.00102 * 264.99470 * 4 2 1 35 35 H 1.08000 * 120.75717 * 359.97438 * 8 7 5 36 36 H 1.07995 * 120.31535 * 179.71728 * 9 8 7 37 37 H 1.08997 * 109.47343 * 4.94010 * 12 11 10 38 38 H 1.09001 * 109.47275 * 124.94932 * 12 11 10 39 39 H 1.09003 * 109.47035 * 244.94278 * 12 11 10 40 40 H 1.09004 * 109.47151 * 90.00325 * 13 11 10 41 41 H 1.09002 * 109.47263 * 210.00203 * 13 11 10 42 42 H 1.09001 * 109.47596 * 330.00250 * 13 11 10 43 43 H 1.08007 * 119.73986 * 180.02562 * 15 14 10 44 44 H 1.08997 * 109.46082 * 301.33854 * 18 16 2 45 45 H 1.09002 * 109.46156 * 61.31140 * 18 16 2 46 46 H 1.09003 * 109.49485 * 58.58159 * 19 18 16 47 47 H 1.08996 * 109.49894 * 178.65066 * 19 18 16 48 48 H 1.08994 * 109.58558 * 174.42142 * 20 19 18 49 49 H 1.09004 * 109.58399 * 294.70195 * 20 19 18 50 50 H 0.97008 * 120.00230 * 179.97438 * 25 24 22 51 51 H 1.08998 * 109.58290 * 293.81866 * 30 21 20 52 52 H 1.08998 * 109.58171 * 173.39464 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8574 1.1613 -2.4119 7 6 2.6394 -0.7138 -3.5616 8 6 2.7777 -0.0232 -4.7757 9 6 3.2374 -0.7082 -5.8677 10 6 3.5529 -2.0603 -5.7437 11 7 4.0178 -2.7567 -6.8465 12 6 4.4455 -2.0302 -8.0446 13 6 4.0821 -4.2199 -6.8152 14 7 3.4130 -2.6893 -4.5847 15 6 2.9732 -2.0679 -3.5104 16 6 2.0401 -0.7212 1.2493 17 1 3.1301 -0.7218 1.2494 18 6 1.5303 -0.0001 2.4992 19 6 2.0668 -0.7014 3.7493 20 6 1.5536 -2.1445 3.7803 21 7 1.9151 -2.8023 2.5173 22 6 2.6008 -3.9876 2.5193 23 1 3.2152 -4.2574 1.6730 24 6 2.5063 -4.8422 3.6090 25 7 1.5044 -4.7227 4.4541 26 14 3.8011 -6.1619 3.8760 27 1 5.1327 -5.5239 4.0349 28 1 3.4735 -6.9363 5.1001 29 1 3.8261 -7.0749 2.7051 30 6 1.5265 -2.1644 1.2520 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 -1.1526 35 1 2.5263 1.0247 -4.8467 36 1 3.3508 -0.2070 -6.8175 37 1 4.4096 -0.9580 -7.8515 38 1 5.4648 -2.3195 -8.3004 39 1 3.7802 -2.2725 -8.8733 40 1 3.1413 -4.6328 -7.1792 41 1 4.8989 -4.5614 -7.4510 42 1 4.2539 -4.5543 -5.7920 43 1 2.8714 -2.6100 -2.5818 44 1 1.8739 1.0342 2.4874 45 1 0.4405 -0.0206 2.5112 46 1 3.1566 -0.7034 3.7258 47 1 1.7230 -0.1732 4.6386 48 1 2.0112 -2.6772 4.6138 49 1 0.4698 -2.1444 3.8976 50 1 1.4381 -5.3202 5.2155 51 1 0.4403 -2.1659 1.1605 52 1 1.9663 -2.7104 0.4174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025465689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:51 Heat of formation + Delta-G solvation = 33.619360 kcal Electronic energy + Delta-G solvation = -30757.488465 eV Core-core repulsion = 26757.818192 eV Total energy + Delta-G solvation = -3999.670273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.83097 -39.54454 -37.97672 -36.70661 -35.16588 -33.09037 -32.76456 -31.59615 -30.46139 -30.13475 -28.61940 -28.05892 -26.09377 -25.28429 -23.91942 -23.56600 -22.45123 -22.00557 -20.69124 -20.11614 -18.71537 -18.11337 -17.35479 -16.94065 -16.54667 -15.75461 -15.56826 -15.24115 -14.91777 -14.87776 -14.58467 -14.39321 -14.13067 -13.75755 -13.59070 -13.40992 -13.28609 -13.05099 -12.94619 -12.82158 -12.50365 -12.46143 -12.35840 -12.23591 -12.16208 -11.77761 -11.55955 -10.98770 -10.90335 -10.54096 -10.47100 -10.31280 -10.18004 -10.15910 -10.05731 -10.00572 -9.85255 -9.60942 -9.45612 -9.38219 -8.87981 -8.44075 -7.89621 -6.68688 -5.78676 -3.18569 0.72354 1.15065 2.54478 2.94853 3.30740 3.38691 3.44901 3.46224 3.82778 4.14419 4.49219 4.54272 4.71112 4.74258 4.85384 4.89439 4.93385 5.04738 5.10045 5.22728 5.25859 5.29059 5.40565 5.42523 5.47158 5.59000 5.60319 5.71178 5.71631 5.75130 5.89193 5.98986 6.04936 6.19149 6.21655 6.25706 6.28120 6.37724 6.51302 6.52705 6.59931 6.68991 6.73248 6.81094 6.89017 6.96290 7.00036 7.41711 7.66376 7.68637 7.79256 7.81015 8.34835 8.43785 9.20912 9.85378 10.41022 11.29518 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.002785 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.391232 B =10052.113783 C =12395.491362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.082 0.918 4 N -0.717 5.717 5 C 0.570 3.430 6 O -0.550 6.550 7 C -0.249 4.249 8 C 0.024 3.976 9 C -0.249 4.249 10 C 0.419 3.581 11 N -0.613 5.613 12 C 0.090 3.910 13 C 0.094 3.906 14 N -0.542 5.542 15 C 0.192 3.808 16 C -0.113 4.113 17 H 0.072 0.928 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.168 3.832 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.065 0.935 24 C 0.002 3.998 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.152 3.848 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.400 0.600 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.161 0.839 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.049 0.951 48 H 0.088 0.912 49 H 0.017 0.983 50 H 0.254 0.746 51 H 0.025 0.975 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 7.676 -21.245 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.100 0.900 4 N -0.369 5.369 5 C 0.357 3.643 6 O -0.429 6.429 7 C -0.257 4.257 8 C -0.002 4.002 9 C -0.273 4.273 10 C 0.184 3.816 11 N -0.326 5.326 12 C -0.053 4.053 13 C -0.049 4.049 14 N -0.259 5.259 15 C 0.032 3.968 16 C -0.134 4.134 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.182 4.182 20 C 0.042 3.958 21 N -0.313 5.313 22 C -0.383 4.383 23 H 0.083 0.917 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.209 1.209 30 C 0.025 3.975 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.237 0.763 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.178 0.822 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.035 0.965 50 H 0.064 0.936 51 H 0.043 0.957 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.301 7.389 -21.252 22.740 hybrid contribution 0.578 -0.393 0.130 0.711 sum 3.879 6.995 -21.122 22.586 Atomic orbital electron populations 1.22264 0.95447 1.02684 1.01900 1.21022 0.94135 0.96740 0.83451 0.89962 1.46125 1.66832 1.14290 1.09634 1.17907 0.77283 0.86324 0.82777 1.90739 1.51403 1.15644 1.85144 1.20674 1.13044 0.96023 0.95970 1.21135 0.88923 1.00124 0.90013 1.21166 1.10842 0.94376 1.00953 1.18540 0.88185 0.88312 0.86571 1.46167 1.67835 1.06318 1.12280 1.21813 0.99699 0.97691 0.86114 1.21647 1.00920 0.78309 1.04049 1.67245 1.21006 1.39403 0.98287 1.22741 0.88161 0.90383 0.95562 1.21958 1.00804 0.98110 0.92544 0.90943 1.21436 1.00323 0.97473 0.94655 1.22178 1.00519 0.99707 0.95751 1.20811 0.96612 0.88080 0.90247 1.44030 1.65417 1.22351 0.99488 1.19133 1.19981 0.95021 1.04138 0.91692 1.24959 0.97311 0.97630 0.99743 1.70044 1.28470 1.39715 1.16327 0.86404 0.81827 0.81443 0.77325 1.21085 1.21688 1.20891 1.20960 0.96556 0.89997 0.89971 0.91686 0.91382 0.92852 0.76344 0.83812 0.84472 0.90127 0.91867 0.92247 0.93215 0.91736 0.89619 0.82177 0.93521 0.92158 0.92816 0.93249 0.89408 0.96508 0.93605 0.95694 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 8.79 37.16 0.33 -2.00 16 2 C 0.15 2.22 2.41 -67.93 -0.16 2.06 16 3 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 4 N -0.72 -9.92 4.95 -54.84 -0.27 -10.19 16 5 C 0.57 8.31 7.73 -12.47 -0.10 8.22 16 6 O -0.55 -9.54 16.07 5.29 0.08 -9.46 16 7 C -0.25 -3.15 5.89 -104.82 -0.62 -3.77 16 8 C 0.02 0.27 9.65 -39.29 -0.38 -0.11 16 9 C -0.25 -2.42 9.15 -39.65 -0.36 -2.79 16 10 C 0.42 4.60 7.30 -155.27 -1.13 3.46 16 11 N -0.61 -5.31 3.37 -189.70 -0.64 -5.95 16 12 C 0.09 0.46 10.50 59.84 0.63 1.09 16 13 C 0.09 0.71 10.60 59.85 0.63 1.35 16 14 N -0.54 -6.78 9.05 -12.14 -0.11 -6.89 16 15 C 0.19 2.32 10.71 -17.13 -0.18 2.14 16 16 C -0.11 -1.87 2.33 -90.50 -0.21 -2.08 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.10 -1.65 4.78 -26.69 -0.13 -1.78 16 19 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 20 C 0.17 3.94 5.34 -3.71 -0.02 3.92 16 21 N -0.59 -14.26 3.00 -172.32 -0.52 -14.78 16 22 C -0.25 -6.76 9.60 -15.06 -0.14 -6.90 16 23 H 0.07 1.69 7.89 -52.48 -0.41 1.27 16 24 C 0.00 0.06 4.88 -17.43 -0.09 -0.03 16 25 N -0.90 -25.82 11.16 55.49 0.62 -25.20 16 26 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 C 0.15 2.96 5.30 -3.71 -0.02 2.94 16 31 H 0.06 0.94 6.32 -51.93 -0.33 0.62 16 32 H 0.07 0.91 6.46 -51.93 -0.34 0.58 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.40 5.11 5.03 -40.82 -0.21 4.90 16 35 H 0.14 1.50 7.73 -52.49 -0.41 1.10 16 36 H 0.14 0.94 6.01 -52.49 -0.32 0.63 16 37 H 0.08 0.35 5.54 -51.93 -0.29 0.07 16 38 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 42 H 0.09 0.79 7.21 -51.93 -0.37 0.41 16 43 H 0.16 1.71 6.41 -52.48 -0.34 1.38 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.97 6.50 -51.93 -0.34 0.63 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.09 2.32 5.95 -51.93 -0.31 2.01 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 51 H 0.03 0.50 6.18 -51.93 -0.32 0.18 16 52 H 0.05 0.85 6.52 -51.93 -0.34 0.52 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -32.42 400.53 -10.01 -42.42 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.06 Total: 4.73 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.12 Total: 2.87 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.92 Total: -63.00 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.42 -10.01 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025465689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.044 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds