Wall clock time and date at job start Wed Apr 1 2020 05:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.46465 * 2 1 4 4 N 1.46499 * 109.46899 * 239.99781 * 2 1 3 5 5 C 1.34781 * 119.99884 * 85.00014 * 4 2 1 6 6 O 1.21590 * 119.99744 * 359.97438 * 5 4 2 7 7 C 1.47541 * 119.99529 * 179.97438 * 5 4 2 8 8 C 1.40352 * 120.46866 * 180.02562 * 7 5 4 9 9 C 1.36859 * 118.49062 * 180.02562 * 8 7 5 10 10 C 1.39396 * 119.37684 * 359.97438 * 9 8 7 11 11 N 1.38465 * 119.53712 * 179.97438 * 10 9 8 12 12 C 1.46494 * 119.99825 * 13.00305 * 11 10 9 13 13 C 1.46498 * 119.99915 * 192.99577 * 11 10 9 14 14 N 1.32607 * 120.92543 * 0.02562 * 10 9 8 15 15 C 1.31671 * 121.63342 * 0.02562 * 14 10 9 16 16 C 1.53001 * 109.47219 * 119.99635 * 2 1 3 17 17 H 1.08994 * 109.49615 * 179.97438 * 16 2 1 18 18 C 1.53044 * 109.49620 * 300.00179 * 16 2 1 19 19 C 1.53045 * 109.53629 * 181.31614 * 18 16 2 20 20 C 1.53194 * 109.31276 * 298.63712 * 19 18 16 21 21 N 1.46924 * 108.77759 * 54.63068 * 20 19 18 22 22 C 1.36938 * 120.62778 * 126.41676 * 21 20 19 23 23 H 1.08003 * 119.99630 * 205.83946 * 22 21 20 24 24 C 1.38808 * 120.00213 * 25.83600 * 22 21 20 25 25 N 1.31613 * 119.99813 * 19.07478 * 24 22 21 26 26 Si 1.86795 * 120.00002 * 199.07313 * 24 22 21 27 27 H 1.48501 * 109.47172 * 60.00365 * 26 24 22 28 28 H 1.48508 * 109.47212 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47255 * 300.00101 * 26 24 22 30 30 C 1.46931 * 118.74061 * 306.39534 * 21 20 19 31 31 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46691 * 299.99911 * 1 2 3 33 33 H 1.09000 * 109.46823 * 60.00308 * 1 2 3 34 34 H 0.96999 * 120.00102 * 264.99470 * 4 2 1 35 35 H 1.08000 * 120.75717 * 359.97438 * 8 7 5 36 36 H 1.07995 * 120.31535 * 179.71728 * 9 8 7 37 37 H 1.08997 * 109.47343 * 4.94010 * 12 11 10 38 38 H 1.09001 * 109.47275 * 124.94932 * 12 11 10 39 39 H 1.09003 * 109.47035 * 244.94278 * 12 11 10 40 40 H 1.09004 * 109.47151 * 90.00325 * 13 11 10 41 41 H 1.09002 * 109.47263 * 210.00203 * 13 11 10 42 42 H 1.09001 * 109.47596 * 330.00250 * 13 11 10 43 43 H 1.08007 * 119.73986 * 180.02562 * 15 14 10 44 44 H 1.08997 * 109.46082 * 301.33854 * 18 16 2 45 45 H 1.09002 * 109.46156 * 61.31140 * 18 16 2 46 46 H 1.09003 * 109.49485 * 58.58159 * 19 18 16 47 47 H 1.08996 * 109.49894 * 178.65066 * 19 18 16 48 48 H 1.08994 * 109.58558 * 174.42142 * 20 19 18 49 49 H 1.09004 * 109.58399 * 294.70195 * 20 19 18 50 50 H 0.97008 * 120.00230 * 179.97438 * 25 24 22 51 51 H 1.08998 * 109.58290 * 293.81866 * 30 21 20 52 52 H 1.08998 * 109.58171 * 173.39464 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8574 1.1613 -2.4119 7 6 2.6394 -0.7138 -3.5616 8 6 2.7777 -0.0232 -4.7757 9 6 3.2374 -0.7082 -5.8677 10 6 3.5529 -2.0603 -5.7437 11 7 4.0178 -2.7567 -6.8465 12 6 4.4455 -2.0302 -8.0446 13 6 4.0821 -4.2199 -6.8152 14 7 3.4130 -2.6893 -4.5847 15 6 2.9732 -2.0679 -3.5104 16 6 2.0401 -0.7212 1.2493 17 1 3.1301 -0.7218 1.2494 18 6 1.5303 -0.0001 2.4992 19 6 2.0668 -0.7014 3.7493 20 6 1.5536 -2.1445 3.7803 21 7 1.9151 -2.8023 2.5173 22 6 2.6008 -3.9876 2.5193 23 1 3.2152 -4.2574 1.6730 24 6 2.5063 -4.8422 3.6090 25 7 1.5044 -4.7227 4.4541 26 14 3.8011 -6.1619 3.8760 27 1 5.1327 -5.5239 4.0349 28 1 3.4735 -6.9363 5.1001 29 1 3.8261 -7.0749 2.7051 30 6 1.5265 -2.1644 1.2520 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 -1.1526 35 1 2.5263 1.0247 -4.8467 36 1 3.3508 -0.2070 -6.8175 37 1 4.4096 -0.9580 -7.8515 38 1 5.4648 -2.3195 -8.3004 39 1 3.7802 -2.2725 -8.8733 40 1 3.1413 -4.6328 -7.1792 41 1 4.8989 -4.5614 -7.4510 42 1 4.2539 -4.5543 -5.7920 43 1 2.8714 -2.6100 -2.5818 44 1 1.8739 1.0342 2.4874 45 1 0.4405 -0.0206 2.5112 46 1 3.1566 -0.7034 3.7258 47 1 1.7230 -0.1732 4.6386 48 1 2.0112 -2.6772 4.6138 49 1 0.4698 -2.1444 3.8976 50 1 1.4381 -5.3202 5.2155 51 1 0.4403 -2.1659 1.1605 52 1 1.9663 -2.7104 0.4174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025465689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:50 Heat of formation + Delta-G solvation = 14.803766 kcal Electronic energy + Delta-G solvation = -30758.304370 eV Core-core repulsion = 26757.818192 eV Total energy + Delta-G solvation = -4000.486178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.74657 -40.66632 -39.38036 -37.45043 -36.65153 -34.69831 -33.61674 -32.87982 -32.26177 -31.19846 -29.44164 -29.13099 -27.19453 -26.88381 -25.18045 -24.40857 -23.90150 -23.20998 -22.03978 -21.27444 -20.14438 -19.13036 -18.59040 -18.14705 -17.72956 -16.82564 -16.68778 -16.38604 -16.13378 -16.00023 -15.73726 -15.68531 -15.33100 -15.10140 -14.88060 -14.67449 -14.36919 -14.15981 -14.04697 -13.94023 -13.73438 -13.53601 -13.36398 -13.27229 -13.02178 -13.01346 -12.74974 -12.70935 -12.67058 -12.28413 -12.04336 -11.92232 -11.67962 -11.48069 -11.30061 -11.11890 -11.07689 -11.00236 -10.85749 -10.47414 -10.41645 -10.06325 -8.65228 -8.62286 -7.84083 -5.25948 -0.17479 0.32025 1.48239 1.50800 1.56980 1.91225 1.91712 2.20773 2.53588 2.91690 3.29908 3.36669 3.61400 3.79047 3.88391 3.93273 3.97114 4.02345 4.07911 4.13194 4.28473 4.37956 4.45758 4.46275 4.50266 4.53519 4.62687 4.69308 4.72424 4.76283 4.86958 4.88205 4.92695 4.93693 4.98199 5.00544 5.06731 5.15952 5.21575 5.24250 5.32349 5.37477 5.41171 5.51595 5.56458 5.61721 5.71225 5.82792 5.89447 6.23233 6.41214 6.55428 6.98805 7.17989 7.23120 7.90874 8.41370 9.21894 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.002785 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.391232 B =10052.113783 C =12395.491362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 H 0.082 0.918 4 N -0.714 5.714 5 C 0.572 3.428 6 O -0.581 6.581 7 C -0.266 4.266 8 C 0.018 3.982 9 C -0.240 4.240 10 C 0.408 3.592 11 N -0.613 5.613 12 C 0.082 3.918 13 C 0.091 3.909 14 N -0.565 5.565 15 C 0.189 3.811 16 C -0.098 4.098 17 H 0.065 0.935 18 C -0.098 4.098 19 C -0.131 4.131 20 C 0.172 3.828 21 N -0.608 5.608 22 C -0.259 4.259 23 H 0.069 0.931 24 C -0.051 4.051 25 N -0.934 5.934 26 Si 0.962 3.038 27 H -0.281 1.281 28 H -0.297 1.297 29 H -0.275 1.275 30 C 0.151 3.849 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.405 0.595 35 H 0.149 0.851 36 H 0.169 0.831 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.166 0.834 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.052 0.948 49 H -0.004 1.004 50 H 0.248 0.752 51 H 0.023 0.977 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 8.544 -23.663 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.100 0.900 4 N -0.366 5.366 5 C 0.361 3.639 6 O -0.462 6.462 7 C -0.275 4.275 8 C -0.008 4.008 9 C -0.264 4.264 10 C 0.172 3.828 11 N -0.325 5.325 12 C -0.059 4.059 13 C -0.052 4.052 14 N -0.283 5.283 15 C 0.029 3.971 16 C -0.118 4.118 17 H 0.083 0.917 18 C -0.136 4.136 19 C -0.170 4.170 20 C 0.046 3.954 21 N -0.331 5.331 22 C -0.389 4.389 23 H 0.087 0.913 24 C -0.247 4.247 25 N -0.580 5.580 26 Si 0.790 3.210 27 H -0.207 1.207 28 H -0.223 1.223 29 H -0.201 1.201 30 C 0.025 3.975 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.242 0.758 35 H 0.167 0.833 36 H 0.186 0.814 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.183 0.817 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.014 0.986 50 H 0.057 0.943 51 H 0.041 0.959 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.313 8.254 -23.728 25.490 hybrid contribution 0.283 -0.708 0.738 1.061 sum 4.596 7.546 -22.990 24.630 Atomic orbital electron populations 1.22208 0.94837 1.02347 1.02299 1.20864 0.94449 0.96331 0.82838 0.90021 1.46081 1.66630 1.14472 1.09395 1.18149 0.76573 0.85934 0.83215 1.90713 1.52985 1.16905 1.85641 1.20559 1.14783 0.96313 0.95813 1.21284 0.89027 1.00466 0.89975 1.21420 1.09436 0.93846 1.01712 1.18910 0.87996 0.89099 0.86801 1.46521 1.66627 1.06876 1.12444 1.22078 1.00827 0.97956 0.85076 1.21706 1.02074 0.77990 1.03408 1.67268 1.21998 1.40039 0.98994 1.22809 0.88064 0.90280 0.95936 1.21738 1.00162 0.96163 0.93782 0.91694 1.21431 1.00622 0.98541 0.92966 1.22014 1.00006 0.96887 0.98130 1.20644 0.95106 0.90505 0.89105 1.44289 1.65552 1.22148 1.01149 1.19495 1.19735 0.95660 1.04060 0.91300 1.25674 0.99049 1.00011 0.99930 1.70195 1.30193 1.40816 1.16821 0.85426 0.79482 0.79119 0.76963 1.20694 1.22306 1.20053 1.21093 0.96513 0.91633 0.88226 0.92326 0.90396 0.93040 0.75792 0.83302 0.81394 0.89254 0.90440 0.90663 0.92881 0.89306 0.91604 0.81690 0.90691 0.91615 0.93398 0.91259 0.92953 0.98555 0.94251 0.95884 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 8.79 71.99 0.63 -3.65 16 2 C 0.16 4.49 2.41 44.99 0.11 4.60 16 3 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 4 N -0.71 -19.29 4.95 -445.68 -2.21 -21.50 16 5 C 0.57 16.43 7.73 86.70 0.67 17.10 16 6 O -0.58 -19.84 16.07 -4.00 -0.06 -19.90 16 7 C -0.27 -6.61 5.89 -19.99 -0.12 -6.73 16 8 C 0.02 0.39 9.65 22.46 0.22 0.61 16 9 C -0.24 -4.18 9.15 22.23 0.20 -3.97 16 10 C 0.41 8.32 7.30 133.25 0.97 9.29 16 11 N -0.61 -9.24 3.37 -754.09 -2.54 -11.78 16 12 C 0.08 0.58 10.50 127.77 1.34 1.92 16 13 C 0.09 1.23 10.60 127.77 1.35 2.58 16 14 N -0.56 -13.79 9.05 -192.32 -1.74 -15.53 16 15 C 0.19 4.54 10.71 85.03 0.91 5.45 16 16 C -0.10 -3.11 2.33 -10.72 -0.02 -3.13 16 17 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 18 C -0.10 -3.01 4.78 30.62 0.15 -2.86 16 19 C -0.13 -4.82 6.08 30.67 0.19 -4.63 16 20 C 0.17 8.21 5.34 86.36 0.46 8.67 16 21 N -0.61 -29.68 3.00 -699.10 -2.10 -31.78 16 22 C -0.26 -13.98 9.60 84.03 0.81 -13.17 16 23 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 24 C -0.05 -2.85 4.88 84.86 0.41 -2.44 16 25 N -0.93 -55.09 11.16 21.65 0.24 -54.85 16 26 Si 0.96 44.71 29.59 68.60 2.03 46.74 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 28 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 29 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 30 C 0.15 5.82 5.30 86.36 0.46 6.28 16 31 H 0.06 1.65 6.32 -2.38 -0.02 1.63 16 32 H 0.08 1.94 6.46 -2.39 -0.02 1.92 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.40 10.15 5.03 -92.71 -0.47 9.69 16 35 H 0.15 2.95 7.73 -2.91 -0.02 2.93 16 36 H 0.17 1.75 6.01 -2.91 -0.02 1.74 16 37 H 0.09 0.47 5.54 -2.39 -0.01 0.46 16 38 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.09 0.75 8.07 -2.39 -0.02 0.73 16 42 H 0.07 1.17 7.21 -2.39 -0.02 1.15 16 43 H 0.17 3.55 6.41 -2.91 -0.02 3.53 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 1.98 6.50 -2.39 -0.02 1.97 16 46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.05 2.86 5.95 -2.39 -0.01 2.85 16 49 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 50 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 51 H 0.02 0.92 6.18 -2.39 -0.01 0.90 16 52 H 0.05 1.93 6.52 -2.39 -0.02 1.91 16 Total: -1.00 -70.90 400.53 2.83 -68.08 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.47 Total: 24.61 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 8.74 Total: 15.91 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -8.35 Total: -135.43 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.06 Total: -19.90 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.90 2.83 -68.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025465689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.881 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds