Wall clock time and date at job start Wed Apr 1 2020 05:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47154 * 120.00035 * 2 1 3 5 5 C 1.34767 * 120.00299 * 274.72734 * 4 2 1 6 6 O 1.21574 * 120.00108 * 0.26815 * 5 4 2 7 7 C 1.47710 * 120.00433 * 180.27887 * 5 4 2 8 8 N 1.32211 * 126.67561 * 359.67530 * 7 5 4 9 9 N 1.28842 * 110.15115 * 179.84579 * 8 7 5 10 10 H 0.96998 * 124.98060 * 180.14824 * 9 8 7 11 11 C 1.34316 * 110.04151 * 0.37093 * 9 8 7 12 12 C 1.35588 * 107.21732 * 359.84661 * 11 9 8 13 13 C 1.50370 * 124.62089 * 179.78843 * 12 11 9 14 14 C 1.53478 * 108.28766 * 343.75413 * 13 12 11 15 15 C 1.53110 * 109.50928 * 49.48574 * 14 13 12 16 16 C 1.50715 * 128.90728 * 179.88886 * 11 9 8 17 17 C 1.53004 * 109.47133 * 240.00346 * 2 1 3 18 18 H 1.08999 * 109.49591 * 184.94009 * 17 2 1 19 19 C 1.53036 * 109.49913 * 64.83547 * 17 2 1 20 20 C 1.53038 * 109.53853 * 178.68359 * 19 17 2 21 21 C 1.53194 * 109.31128 * 61.36753 * 20 19 17 22 22 N 1.46926 * 108.77435 * 305.36598 * 21 20 19 23 23 C 1.36939 * 120.62530 * 233.58725 * 22 21 20 24 24 H 1.08005 * 119.99829 * 152.31345 * 23 22 21 25 25 C 1.38806 * 120.00346 * 332.30821 * 23 22 21 26 26 N 1.31619 * 119.99848 * 342.59789 * 25 23 22 27 27 Si 1.86804 * 120.00355 * 162.60357 * 25 23 22 28 28 H 1.48502 * 109.47073 * 94.34412 * 27 25 23 29 29 H 1.48495 * 109.47256 * 214.35007 * 27 25 23 30 30 H 1.48506 * 109.46592 * 334.34945 * 27 25 23 31 31 C 1.46923 * 118.73905 * 53.60902 * 22 21 20 32 32 H 1.09000 * 109.46779 * 299.99428 * 1 2 3 33 33 H 1.08996 * 109.46755 * 59.99575 * 1 2 3 34 34 H 1.09001 * 109.46602 * 179.97438 * 1 2 3 35 35 H 0.97006 * 119.99889 * 95.00096 * 4 2 1 36 36 H 1.09003 * 109.70030 * 103.45380 * 13 12 11 37 37 H 1.09001 * 109.70215 * 224.05582 * 13 12 11 38 38 H 1.09000 * 109.46464 * 289.47392 * 14 13 12 39 39 H 1.08998 * 109.45769 * 169.48911 * 14 13 12 40 40 H 1.09001 * 109.44251 * 169.89788 * 15 14 13 41 41 H 1.09001 * 109.41605 * 49.98189 * 15 14 13 42 42 H 1.09000 * 109.68598 * 283.02514 * 16 11 9 43 43 H 1.09001 * 109.69083 * 43.55561 * 16 11 9 44 44 H 1.09004 * 109.45912 * 298.70533 * 19 17 2 45 45 H 1.09007 * 109.45686 * 58.66186 * 19 17 2 46 46 H 1.09001 * 109.49800 * 301.41747 * 20 19 17 47 47 H 1.09002 * 109.52276 * 181.33303 * 20 19 17 48 48 H 1.09002 * 109.58678 * 185.57629 * 21 20 19 49 49 H 1.09000 * 109.70100 * 65.22244 * 21 20 19 50 50 H 0.97002 * 119.99831 * 180.02562 * 26 25 23 51 51 H 1.09008 * 109.58135 * 186.60589 * 31 22 21 52 52 H 1.08995 * 109.58513 * 66.17871 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1523 -0.0171 2.3557 6 8 1.8633 1.1626 2.4104 7 6 2.6506 -0.7118 3.5602 8 7 2.9961 -1.9847 3.6515 9 7 3.3884 -2.2534 4.8489 10 1 3.6921 -3.1232 5.1526 11 6 3.3106 -1.1539 5.6164 12 6 2.8435 -0.1503 4.8335 13 6 2.6020 1.2577 5.3031 14 6 2.5728 1.2553 6.8376 15 6 3.7982 0.5082 7.3711 16 6 3.6586 -0.9902 7.0737 17 6 2.0401 -0.7212 -1.2493 18 1 3.1264 -0.7987 -1.2066 19 6 1.6320 0.0666 -2.4963 20 6 2.1698 -0.6366 -3.7446 21 6 1.5608 -2.0391 -3.8381 22 7 1.8248 -2.7540 -2.5819 23 6 2.4275 -3.9836 -2.5923 24 1 3.0119 -4.3057 -1.7431 25 6 2.2873 -4.8159 -3.6942 26 7 1.3257 -4.5973 -4.5660 27 14 3.4630 -6.2466 -3.9398 28 1 2.8707 -7.4792 -3.3609 29 1 3.7023 -6.4471 -5.3916 30 1 4.7508 -5.9508 -3.2621 31 6 1.4295 -2.1247 -1.3144 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3632 -1.0277 -0.0005 35 1 2.2491 -1.6318 1.1526 36 1 3.4054 1.9051 4.9518 37 1 1.6468 1.6147 4.9180 38 1 1.6660 0.7589 7.1829 39 1 2.5863 2.2823 7.2026 40 1 3.8745 0.6588 8.4479 41 1 4.6960 0.8921 6.8865 42 1 2.8664 -1.4148 7.6903 43 1 4.6002 -1.4967 7.2856 44 1 0.5448 0.1224 -2.5509 45 1 2.0448 1.0739 -2.4406 46 1 3.2550 -0.7148 -3.6790 47 1 1.8993 -0.0627 -4.6310 48 1 2.0145 -2.5799 -4.6686 49 1 0.4850 -1.9628 -3.9959 50 1 1.2275 -5.1792 -5.3358 51 1 1.7967 -2.7220 -0.4798 52 1 0.3430 -2.0532 -1.2653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025467180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:37 Heat of formation + Delta-G solvation = 34.016719 kcal Electronic energy + Delta-G solvation = -31133.850433 eV Core-core repulsion = 27134.197391 eV Total energy + Delta-G solvation = -3999.653042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -42.99313 -39.59844 -37.87312 -37.19477 -35.09739 -33.08174 -32.73671 -31.03045 -30.40985 -30.18321 -29.58219 -28.00454 -25.26449 -24.83437 -24.03455 -23.15025 -22.40756 -22.06930 -20.45148 -19.86788 -19.22806 -18.55675 -17.95318 -17.07477 -16.50023 -16.17570 -15.67387 -14.94384 -14.85200 -14.61595 -14.28964 -14.18589 -14.00987 -13.91831 -13.69865 -13.38921 -13.38576 -13.20852 -13.01434 -12.43104 -12.37754 -12.29366 -12.20124 -11.74543 -11.55852 -11.26794 -11.14966 -10.99452 -10.95732 -10.87310 -10.82675 -10.51366 -10.42219 -10.15770 -10.09849 -9.89701 -9.80859 -9.54746 -9.46859 -9.34634 -8.83834 -8.75658 -8.43076 -6.62673 -5.76383 -3.17867 1.51554 1.92860 2.63319 3.34576 3.37850 3.45231 3.47782 3.49571 4.21809 4.31643 4.50533 4.51521 4.55672 4.87382 4.98919 5.06443 5.12778 5.20083 5.25622 5.29327 5.33851 5.44368 5.50332 5.56700 5.63101 5.64604 5.75367 5.77307 5.79168 5.83365 5.93199 6.05580 6.07952 6.09571 6.20142 6.29468 6.31923 6.34009 6.42120 6.56692 6.65146 6.72051 6.75741 6.80850 6.86886 6.92127 7.04937 7.44203 7.57600 7.71031 7.81878 7.85619 8.37394 8.47585 9.24068 9.87951 10.44685 11.31942 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.002584 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.059746 B =10834.840940 C =12396.640566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.150 3.850 3 H 0.083 0.917 4 N -0.706 5.706 5 C 0.602 3.398 6 O -0.537 6.537 7 C -0.004 4.004 8 N -0.257 5.257 9 N -0.374 5.374 10 H 0.445 0.555 11 C 0.005 3.995 12 C -0.144 4.144 13 C -0.042 4.042 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.047 4.047 17 C -0.113 4.113 18 H 0.072 0.928 19 C -0.100 4.100 20 C -0.142 4.142 21 C 0.169 3.831 22 N -0.591 5.591 23 C -0.250 4.250 24 H 0.064 0.936 25 C 0.002 3.998 26 N -0.902 5.902 27 Si 0.900 3.100 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.279 1.279 31 C 0.151 3.849 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.408 0.592 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.017 0.983 50 H 0.253 0.747 51 H 0.048 0.952 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 10.109 22.480 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.101 0.899 4 N -0.357 5.357 5 C 0.386 3.614 6 O -0.413 6.413 7 C -0.164 4.164 8 N -0.093 5.093 9 N -0.086 5.086 10 H 0.289 0.711 11 C -0.122 4.122 12 C -0.154 4.154 13 C -0.080 4.080 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.086 4.086 17 C -0.133 4.133 18 H 0.090 0.910 19 C -0.138 4.138 20 C -0.181 4.181 21 C 0.044 3.956 22 N -0.313 5.313 23 C -0.380 4.380 24 H 0.082 0.918 25 C -0.197 4.197 26 N -0.547 5.547 27 Si 0.730 3.270 28 H -0.215 1.215 29 H -0.216 1.216 30 H -0.205 1.205 31 C 0.024 3.976 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.035 0.965 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.180 9.894 21.670 24.033 hybrid contribution 0.839 -1.260 0.318 1.547 sum 4.019 8.634 21.988 23.962 Atomic orbital electron populations 1.22262 0.95361 1.02766 1.01885 1.21069 0.94224 0.96743 0.83423 0.89885 1.46071 1.65747 1.14678 1.09241 1.16860 0.77380 0.85681 0.81435 1.90754 1.51153 1.14896 1.84456 1.21692 1.08108 0.90725 0.95854 1.73919 1.16180 1.17049 1.02138 1.42992 1.47721 1.11658 1.06248 0.71111 1.21163 1.07045 0.87712 0.96252 1.19874 1.06359 0.97440 0.91712 1.19975 1.03197 0.90771 0.94058 1.21675 0.98058 1.00615 0.95539 1.21563 0.99323 0.93255 1.01116 1.20222 1.01934 0.98483 0.87921 1.21948 1.00938 0.98019 0.92439 0.90978 1.21419 1.00509 0.97208 0.94674 1.22176 1.00594 0.99572 0.95790 1.20789 0.96602 0.88039 0.90206 1.44029 1.69773 1.17581 0.99947 1.19166 1.23357 0.92163 1.03321 0.91813 1.25012 0.97482 0.97647 0.99546 1.70044 1.30273 1.39669 1.14670 0.86322 0.81082 0.82484 0.77141 1.21530 1.21588 1.20483 1.21002 0.96165 0.90409 0.89986 0.92831 0.91372 0.91592 0.75573 0.90651 0.89740 0.91720 0.91186 0.90939 0.91284 0.89940 0.90329 0.92216 0.93515 0.92833 0.93245 0.89625 0.96458 0.93712 0.93385 0.95642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.76 37.16 0.33 -2.11 16 2 C 0.15 2.32 2.36 -67.93 -0.16 2.16 16 3 H 0.08 1.32 7.57 -51.93 -0.39 0.93 16 4 N -0.71 -10.88 5.01 -54.79 -0.27 -11.15 16 5 C 0.60 9.59 7.79 -12.40 -0.10 9.50 16 6 O -0.54 -9.47 15.46 5.30 0.08 -9.39 16 7 C 0.00 -0.05 7.12 -82.98 -0.59 -0.65 16 8 N -0.26 -3.40 11.96 33.28 0.40 -3.00 16 9 N -0.37 -3.59 6.82 33.42 0.23 -3.36 16 10 H 0.44 2.62 8.96 -190.22 -1.71 0.92 16 11 C 0.01 0.05 7.12 -82.45 -0.59 -0.54 16 12 C -0.14 -1.74 5.99 -104.88 -0.63 -2.36 16 13 C -0.04 -0.44 5.54 -27.80 -0.15 -0.59 16 14 C -0.12 -0.86 5.91 -26.43 -0.16 -1.02 16 15 C -0.11 -0.65 5.89 -26.47 -0.16 -0.81 16 16 C -0.05 -0.27 6.31 -27.67 -0.17 -0.44 16 17 C -0.11 -1.95 2.27 -90.50 -0.21 -2.16 16 18 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 19 C -0.10 -1.69 4.89 -26.69 -0.13 -1.82 16 20 C -0.14 -2.73 6.08 -26.61 -0.16 -2.90 16 21 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 22 N -0.59 -14.72 2.99 -172.32 -0.52 -15.23 16 23 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 24 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 25 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 26 N -0.90 -26.24 11.19 55.49 0.62 -25.62 16 27 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 31 C 0.15 3.10 5.26 -3.71 -0.02 3.08 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.95 6.59 -51.93 -0.34 0.61 16 34 H 0.07 1.02 6.23 -51.93 -0.32 0.69 16 35 H 0.41 6.28 7.01 -40.82 -0.29 5.99 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.00 7.67 -51.93 -0.40 0.60 16 38 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.99 6.63 -51.93 -0.34 0.65 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.09 2.30 6.04 -51.93 -0.31 1.98 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.05 0.97 6.75 -51.92 -0.35 0.62 16 52 H 0.03 0.54 6.06 -51.93 -0.31 0.22 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -32.63 396.94 -11.47 -44.10 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -9.81 Total: 4.62 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.14 Total: -3.68 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.46 Total: -58.36 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.63 -11.47 -44.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025467180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.118 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds