Wall clock time and date at job start Wed Apr 1 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47154 * 120.00035 * 2 1 3 5 5 C 1.34767 * 120.00299 * 274.72734 * 4 2 1 6 6 O 1.21574 * 120.00108 * 0.26815 * 5 4 2 7 7 C 1.47710 * 120.00433 * 180.27887 * 5 4 2 8 8 N 1.32211 * 126.67561 * 359.67530 * 7 5 4 9 9 N 1.28842 * 110.15115 * 179.84579 * 8 7 5 10 10 H 0.96998 * 124.98060 * 180.14824 * 9 8 7 11 11 C 1.34316 * 110.04151 * 0.37093 * 9 8 7 12 12 C 1.35588 * 107.21732 * 359.84661 * 11 9 8 13 13 C 1.50370 * 124.62089 * 179.78843 * 12 11 9 14 14 C 1.53478 * 108.28766 * 343.75413 * 13 12 11 15 15 C 1.53110 * 109.50928 * 49.48574 * 14 13 12 16 16 C 1.50715 * 128.90728 * 179.88886 * 11 9 8 17 17 C 1.53004 * 109.47133 * 240.00346 * 2 1 3 18 18 H 1.08999 * 109.49591 * 184.94009 * 17 2 1 19 19 C 1.53036 * 109.49913 * 64.83547 * 17 2 1 20 20 C 1.53038 * 109.53853 * 178.68359 * 19 17 2 21 21 C 1.53194 * 109.31128 * 61.36753 * 20 19 17 22 22 N 1.46926 * 108.77435 * 305.36598 * 21 20 19 23 23 C 1.36939 * 120.62530 * 233.58725 * 22 21 20 24 24 H 1.08005 * 119.99829 * 152.31345 * 23 22 21 25 25 C 1.38806 * 120.00346 * 332.30821 * 23 22 21 26 26 N 1.31619 * 119.99848 * 342.59789 * 25 23 22 27 27 Si 1.86804 * 120.00355 * 162.60357 * 25 23 22 28 28 H 1.48502 * 109.47073 * 94.34412 * 27 25 23 29 29 H 1.48495 * 109.47256 * 214.35007 * 27 25 23 30 30 H 1.48506 * 109.46592 * 334.34945 * 27 25 23 31 31 C 1.46923 * 118.73905 * 53.60902 * 22 21 20 32 32 H 1.09000 * 109.46779 * 299.99428 * 1 2 3 33 33 H 1.08996 * 109.46755 * 59.99575 * 1 2 3 34 34 H 1.09001 * 109.46602 * 179.97438 * 1 2 3 35 35 H 0.97006 * 119.99889 * 95.00096 * 4 2 1 36 36 H 1.09003 * 109.70030 * 103.45380 * 13 12 11 37 37 H 1.09001 * 109.70215 * 224.05582 * 13 12 11 38 38 H 1.09000 * 109.46464 * 289.47392 * 14 13 12 39 39 H 1.08998 * 109.45769 * 169.48911 * 14 13 12 40 40 H 1.09001 * 109.44251 * 169.89788 * 15 14 13 41 41 H 1.09001 * 109.41605 * 49.98189 * 15 14 13 42 42 H 1.09000 * 109.68598 * 283.02514 * 16 11 9 43 43 H 1.09001 * 109.69083 * 43.55561 * 16 11 9 44 44 H 1.09004 * 109.45912 * 298.70533 * 19 17 2 45 45 H 1.09007 * 109.45686 * 58.66186 * 19 17 2 46 46 H 1.09001 * 109.49800 * 301.41747 * 20 19 17 47 47 H 1.09002 * 109.52276 * 181.33303 * 20 19 17 48 48 H 1.09002 * 109.58678 * 185.57629 * 21 20 19 49 49 H 1.09000 * 109.70100 * 65.22244 * 21 20 19 50 50 H 0.97002 * 119.99831 * 180.02562 * 26 25 23 51 51 H 1.09008 * 109.58135 * 186.60589 * 31 22 21 52 52 H 1.08995 * 109.58513 * 66.17871 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1523 -0.0171 2.3557 6 8 1.8633 1.1626 2.4104 7 6 2.6506 -0.7118 3.5602 8 7 2.9961 -1.9847 3.6515 9 7 3.3884 -2.2534 4.8489 10 1 3.6921 -3.1232 5.1526 11 6 3.3106 -1.1539 5.6164 12 6 2.8435 -0.1503 4.8335 13 6 2.6020 1.2577 5.3031 14 6 2.5728 1.2553 6.8376 15 6 3.7982 0.5082 7.3711 16 6 3.6586 -0.9902 7.0737 17 6 2.0401 -0.7212 -1.2493 18 1 3.1264 -0.7987 -1.2066 19 6 1.6320 0.0666 -2.4963 20 6 2.1698 -0.6366 -3.7446 21 6 1.5608 -2.0391 -3.8381 22 7 1.8248 -2.7540 -2.5819 23 6 2.4275 -3.9836 -2.5923 24 1 3.0119 -4.3057 -1.7431 25 6 2.2873 -4.8159 -3.6942 26 7 1.3257 -4.5973 -4.5660 27 14 3.4630 -6.2466 -3.9398 28 1 2.8707 -7.4792 -3.3609 29 1 3.7023 -6.4471 -5.3916 30 1 4.7508 -5.9508 -3.2621 31 6 1.4295 -2.1247 -1.3144 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3632 -1.0277 -0.0005 35 1 2.2491 -1.6318 1.1526 36 1 3.4054 1.9051 4.9518 37 1 1.6468 1.6147 4.9180 38 1 1.6660 0.7589 7.1829 39 1 2.5863 2.2823 7.2026 40 1 3.8745 0.6588 8.4479 41 1 4.6960 0.8921 6.8865 42 1 2.8664 -1.4148 7.6903 43 1 4.6002 -1.4967 7.2856 44 1 0.5448 0.1224 -2.5509 45 1 2.0448 1.0739 -2.4406 46 1 3.2550 -0.7148 -3.6790 47 1 1.8993 -0.0627 -4.6310 48 1 2.0145 -2.5799 -4.6686 49 1 0.4850 -1.9628 -3.9959 50 1 1.2275 -5.1792 -5.3358 51 1 1.7967 -2.7220 -0.4798 52 1 0.3430 -2.0532 -1.2653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025467180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:34 Heat of formation + Delta-G solvation = 13.658237 kcal Electronic energy + Delta-G solvation = -31134.733243 eV Core-core repulsion = 27134.197391 eV Total energy + Delta-G solvation = -4000.535852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.85616 -40.91232 -39.39469 -37.81893 -36.66131 -34.69782 -33.74055 -32.45447 -32.23258 -30.91355 -30.41704 -29.44570 -27.22736 -26.04097 -24.71064 -24.47067 -23.83863 -23.06042 -21.98665 -21.06364 -20.08052 -19.97515 -18.75467 -18.69532 -17.95004 -17.05107 -16.94483 -16.82784 -16.04019 -15.73848 -15.68889 -15.37588 -15.19764 -14.98982 -14.73160 -14.63632 -14.53906 -14.12655 -14.07881 -13.99351 -13.92679 -13.60898 -13.31013 -13.04700 -12.97552 -12.77754 -12.69883 -12.29938 -12.05743 -11.96384 -11.85606 -11.74416 -11.70471 -11.65660 -11.57730 -11.49798 -11.28803 -11.08448 -10.96462 -10.51899 -10.42865 -10.03654 -9.62433 -8.65117 -7.86706 -5.31028 0.48997 1.08837 1.44603 1.46517 1.56396 1.85377 2.23440 2.34024 2.50701 3.27501 3.35873 3.58656 3.64187 3.86492 3.92550 3.99132 4.05105 4.06687 4.20262 4.30092 4.35538 4.36533 4.42834 4.48433 4.61039 4.66153 4.67766 4.69146 4.76833 4.85946 4.88689 4.96709 4.99551 5.04951 5.07392 5.14404 5.16364 5.20690 5.26486 5.29547 5.34283 5.35087 5.46955 5.49372 5.51511 5.52344 5.58092 5.68173 5.80263 6.11208 6.39460 6.45537 6.84885 7.15151 7.15908 7.87701 8.39115 9.19343 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.002584 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.059746 B =10834.840940 C =12396.640566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.086 0.914 4 N -0.706 5.706 5 C 0.600 3.400 6 O -0.560 6.560 7 C -0.034 4.034 8 N -0.280 5.280 9 N -0.358 5.358 10 H 0.461 0.539 11 C 0.026 3.974 12 C -0.170 4.170 13 C -0.041 4.041 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.045 4.045 17 C -0.097 4.097 18 H 0.062 0.938 19 C -0.096 4.096 20 C -0.131 4.131 21 C 0.174 3.826 22 N -0.609 5.609 23 C -0.260 4.260 24 H 0.064 0.936 25 C -0.051 4.051 26 N -0.933 5.933 27 Si 0.964 3.036 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.271 1.271 31 C 0.152 3.848 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.407 0.593 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.051 0.949 49 H -0.002 1.002 50 H 0.249 0.751 51 H 0.045 0.955 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 10.534 25.147 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.104 0.896 4 N -0.356 5.356 5 C 0.386 3.614 6 O -0.438 6.438 7 C -0.193 4.193 8 N -0.117 5.117 9 N -0.073 5.073 10 H 0.309 0.691 11 C -0.103 4.103 12 C -0.180 4.180 13 C -0.080 4.080 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.084 4.084 17 C -0.117 4.117 18 H 0.080 0.920 19 C -0.134 4.134 20 C -0.170 4.170 21 C 0.048 3.952 22 N -0.332 5.332 23 C -0.391 4.391 24 H 0.081 0.919 25 C -0.246 4.246 26 N -0.580 5.580 27 Si 0.792 3.208 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.196 1.196 31 C 0.027 3.973 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.069 0.931 49 H 0.016 0.984 50 H 0.058 0.942 51 H 0.063 0.937 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.356 10.317 24.359 26.810 hybrid contribution 0.463 -1.411 -0.435 1.547 sum 4.819 8.906 23.924 25.978 Atomic orbital electron populations 1.22200 0.94651 1.02295 1.02453 1.20948 0.94625 0.96415 0.82643 0.89633 1.46065 1.65754 1.14564 1.09268 1.17126 0.76861 0.85500 0.81917 1.90724 1.52287 1.15848 1.84934 1.21611 1.09949 0.91590 0.96130 1.73835 1.17226 1.16722 1.03949 1.43098 1.46258 1.12647 1.05330 0.69132 1.21731 1.04475 0.86447 0.97615 1.20194 1.07596 0.98846 0.91413 1.19961 1.01516 0.89869 0.96630 1.21662 0.99105 1.01867 0.92778 1.21591 0.98028 0.92839 1.02612 1.20463 1.03868 0.98964 0.85097 1.21725 0.99983 0.96184 0.93848 0.91969 1.21414 1.01013 0.98172 0.92833 1.22014 0.99842 0.96981 0.98169 1.20632 0.95344 0.90256 0.88949 1.44287 1.70001 1.17394 1.01535 1.19475 1.23185 0.93119 1.03298 0.91866 1.25750 0.98983 1.00340 0.99541 1.70192 1.31872 1.40799 1.15102 0.85318 0.79316 0.79468 0.76687 1.21263 1.21833 1.19611 1.21085 0.96165 0.91977 0.88095 0.92903 0.90140 0.92509 0.75654 0.91579 0.92071 0.91520 0.89971 0.88224 0.91882 0.87942 0.87761 0.91551 0.90517 0.93406 0.90993 0.93076 0.98429 0.94160 0.93657 0.95817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 8.76 71.98 0.63 -3.94 16 2 C 0.16 4.82 2.36 44.99 0.11 4.92 16 3 H 0.09 2.63 7.57 -2.39 -0.02 2.62 16 4 N -0.71 -21.98 5.01 -445.53 -2.23 -24.21 16 5 C 0.60 19.54 7.79 86.75 0.68 20.21 16 6 O -0.56 -20.24 15.46 -3.95 -0.06 -20.30 16 7 C -0.03 -1.00 7.12 42.14 0.30 -0.70 16 8 N -0.28 -7.32 11.96 -48.62 -0.58 -7.90 16 9 N -0.36 -6.30 6.82 -48.17 -0.33 -6.63 16 10 H 0.46 4.41 8.96 -219.80 -1.97 2.44 16 11 C 0.03 0.43 7.12 41.57 0.30 0.72 16 12 C -0.17 -4.05 5.99 -20.03 -0.12 -4.17 16 13 C -0.04 -0.87 5.54 29.90 0.17 -0.70 16 14 C -0.12 -1.44 5.91 30.79 0.18 -1.26 16 15 C -0.11 -0.92 5.89 30.77 0.18 -0.74 16 16 C -0.05 -0.35 6.31 29.99 0.19 -0.16 16 17 C -0.10 -3.29 2.27 -10.72 -0.02 -3.32 16 18 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 19 C -0.10 -3.09 4.89 30.62 0.15 -2.94 16 20 C -0.13 -4.93 6.08 30.67 0.19 -4.75 16 21 C 0.17 8.48 5.31 86.36 0.46 8.94 16 22 N -0.61 -30.89 2.99 -699.09 -2.09 -32.98 16 23 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 24 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 25 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 26 N -0.93 -55.84 11.19 21.65 0.24 -55.59 16 27 Si 0.96 45.44 29.59 68.60 2.03 47.47 16 28 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 29 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 30 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 31 C 0.15 6.30 5.26 86.36 0.45 6.76 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.12 6.59 -2.39 -0.02 2.10 16 34 H 0.06 1.74 6.23 -2.39 -0.01 1.72 16 35 H 0.41 12.78 7.01 -92.70 -0.65 12.13 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.52 7.67 -2.39 -0.02 1.50 16 38 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.06 0.62 8.11 -2.39 -0.02 0.60 16 42 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.07 2.07 6.63 -2.38 -0.02 2.05 16 45 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 46 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.05 2.83 6.04 -2.39 -0.01 2.82 16 49 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 51 H 0.04 1.87 6.75 -2.38 -0.02 1.85 16 52 H 0.02 1.01 6.06 -2.39 -0.01 0.99 16 Total: -1.00 -73.07 396.94 0.36 -72.71 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -1.67 Total: 24.72 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.05 Total: 2.71 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -4.99 Total: -127.31 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.06 Total: -20.30 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.07 0.36 -72.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025467180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.369 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds