Wall clock time and date at job start Wed Apr 1 2020 05:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 N 1.46500 * 109.46896 * 239.99919 * 2 1 3 5 5 C 1.34781 * 119.99871 * 85.00075 * 4 2 1 6 6 O 1.21577 * 119.99685 * 0.02562 * 5 4 2 7 7 C 1.47709 * 120.00188 * 179.97438 * 5 4 2 8 8 N 1.32204 * 126.67678 * 359.69351 * 7 5 4 9 9 N 1.28852 * 110.14832 * 179.80663 * 8 7 5 10 10 H 0.96997 * 124.97316 * 180.09511 * 9 8 7 11 11 C 1.34312 * 110.04281 * 0.39354 * 9 8 7 12 12 C 1.35586 * 107.21405 * 359.83693 * 11 9 8 13 13 C 1.50379 * 124.61588 * 179.78658 * 12 11 9 14 14 C 1.53463 * 108.29103 * 343.76718 * 13 12 11 15 15 C 1.53110 * 109.51632 * 49.47357 * 14 13 12 16 16 C 1.50710 * 128.90395 * 179.87949 * 11 9 8 17 17 C 1.52998 * 109.47298 * 120.00428 * 2 1 3 18 18 H 1.09005 * 109.52424 * 59.91283 * 17 2 1 19 19 C 1.53041 * 109.49655 * 299.83927 * 17 2 1 20 20 C 1.53070 * 109.65895 * 178.74768 * 19 17 2 21 21 C 1.53192 * 109.29486 * 61.15317 * 20 19 17 22 22 N 1.46923 * 108.89086 * 305.57609 * 21 20 19 23 23 C 1.36938 * 120.62890 * 233.55909 * 22 21 20 24 24 H 1.08011 * 119.99821 * 151.82869 * 23 22 21 25 25 C 1.38810 * 120.00150 * 331.82504 * 23 22 21 26 26 N 1.31613 * 120.00273 * 343.07447 * 25 23 22 27 27 Si 1.86803 * 119.99828 * 163.06738 * 25 23 22 28 28 H 1.48503 * 109.47179 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.47229 * 120.00279 * 27 25 23 30 30 H 1.48502 * 109.47136 * 240.00365 * 27 25 23 31 31 C 1.46928 * 118.73969 * 53.53853 * 22 21 20 32 32 H 1.08999 * 109.47018 * 59.99567 * 1 2 3 33 33 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46896 * 299.99539 * 1 2 3 35 35 H 0.96997 * 120.00877 * 264.99723 * 4 2 1 36 36 H 1.09000 * 109.70507 * 103.45358 * 13 12 11 37 37 H 1.09003 * 109.69652 * 224.05276 * 13 12 11 38 38 H 1.09001 * 109.45486 * 289.46498 * 14 13 12 39 39 H 1.08999 * 109.46134 * 169.48906 * 14 13 12 40 40 H 1.09000 * 109.44208 * 169.90461 * 15 14 13 41 41 H 1.08999 * 109.41107 * 49.99253 * 15 14 13 42 42 H 1.09000 * 109.68687 * 283.01285 * 16 11 9 43 43 H 1.08990 * 109.68976 * 43.55734 * 16 11 9 44 44 H 1.09004 * 109.45782 * 298.70130 * 19 17 2 45 45 H 1.08998 * 109.46417 * 58.67464 * 19 17 2 46 46 H 1.08996 * 109.39171 * 301.27441 * 20 19 17 47 47 H 1.09003 * 109.62547 * 181.16407 * 20 19 17 48 48 H 1.09002 * 109.58742 * 185.72218 * 21 20 19 49 49 H 1.08998 * 109.59351 * 65.43846 * 21 20 19 50 50 H 0.96997 * 120.00271 * 180.02562 * 26 25 23 51 51 H 1.09004 * 109.58144 * 66.18005 * 31 22 21 52 52 H 1.08998 * 109.58393 * 186.45981 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4116 7 6 2.6399 -0.7144 -3.5631 8 7 2.9960 -1.9845 -3.6516 9 7 3.3723 -2.2572 -4.8534 10 1 3.6763 -3.1268 -5.1570 11 6 3.2880 -1.1593 -5.6225 12 6 2.8271 -0.1542 -4.8379 13 6 2.5900 1.2550 -5.3062 14 6 3.3224 1.4487 -6.6408 15 6 2.9740 0.2967 -7.5873 16 6 3.6223 -0.9990 -7.0833 17 6 2.0401 -0.7213 1.2492 18 1 1.6759 -1.7488 1.2507 19 6 1.5336 0.0019 2.4992 20 6 2.0159 -0.7348 3.7513 21 6 3.5476 -0.7382 3.7781 22 7 4.0442 -1.3006 2.5149 23 6 4.9301 -2.3449 2.5166 24 1 4.9508 -3.0369 1.6876 25 6 5.8015 -2.5140 3.5838 26 7 6.0199 -1.5205 4.4189 27 14 6.6641 -4.1518 3.8347 28 1 6.2515 -5.0974 2.7666 29 1 8.1344 -3.9510 3.7765 30 1 6.2926 -4.7090 5.1602 31 6 3.5719 -0.7217 1.2498 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.2491 -1.6318 -1.1528 36 1 1.5219 1.4211 -5.4460 37 1 2.9781 1.9575 -4.5685 38 1 4.3982 1.4623 -6.4659 39 1 3.0154 2.3933 -7.0898 40 1 3.3454 0.5233 -8.5867 41 1 1.8918 0.1713 -7.6222 42 1 4.7036 -0.9415 -7.2083 43 1 3.2323 -1.8480 -7.6446 44 1 1.9183 1.0217 2.5096 45 1 0.4439 0.0249 2.4890 46 1 1.6501 -1.7613 3.7307 47 1 1.6377 -0.2311 4.6409 48 1 3.8971 -1.3474 4.6117 49 1 3.9134 0.2822 3.8926 50 1 6.6292 -1.6385 5.1644 51 1 3.9377 0.3009 1.1569 52 1 3.9396 -1.3185 0.4151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025467185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:54 Heat of formation + Delta-G solvation = 31.684232 kcal Electronic energy + Delta-G solvation = -31200.452328 eV Core-core repulsion = 27200.698142 eV Total energy + Delta-G solvation = -3999.754187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.96475 -39.53970 -37.76439 -37.16325 -35.13399 -33.06670 -32.71477 -30.99974 -30.41496 -30.15358 -29.53581 -28.39218 -25.26625 -24.56664 -23.99881 -22.89954 -22.34542 -21.86516 -20.36543 -20.08038 -19.25013 -18.91167 -17.95224 -16.96298 -16.56330 -16.16173 -15.68509 -14.96957 -14.83376 -14.41899 -14.31582 -14.11240 -13.99674 -13.79056 -13.57093 -13.36668 -13.31930 -13.15322 -13.09448 -12.56199 -12.39700 -12.34680 -12.16150 -11.74579 -11.45332 -11.24128 -11.10871 -11.05440 -10.95722 -10.92746 -10.80240 -10.61970 -10.35648 -10.15192 -10.09071 -9.92474 -9.82615 -9.49362 -9.44586 -9.35126 -8.81304 -8.72789 -8.42616 -6.61227 -5.74749 -3.17125 1.54188 1.96038 2.65548 3.35338 3.38408 3.46071 3.48295 3.53240 4.24357 4.34392 4.51160 4.54389 4.58200 4.90641 5.01954 5.02681 5.14674 5.21635 5.29301 5.33750 5.35742 5.43149 5.50144 5.59383 5.62789 5.66262 5.66986 5.81388 5.84185 5.87019 5.87806 6.09112 6.10693 6.12022 6.15127 6.20581 6.35337 6.40212 6.41704 6.51078 6.66452 6.68201 6.77331 6.83263 6.90351 6.93954 7.06223 7.45287 7.59255 7.72550 7.83351 7.87171 8.40045 8.49440 9.25816 9.89469 10.46699 11.33597 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.002764 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.983229 B =10127.639657 C =11669.250519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.087 0.913 4 N -0.705 5.705 5 C 0.604 3.396 6 O -0.535 6.535 7 C -0.002 4.002 8 N -0.258 5.258 9 N -0.374 5.374 10 H 0.444 0.556 11 C 0.005 3.995 12 C -0.143 4.143 13 C -0.042 4.042 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.047 4.047 17 C -0.110 4.110 18 H 0.071 0.929 19 C -0.101 4.101 20 C -0.142 4.142 21 C 0.169 3.831 22 N -0.591 5.591 23 C -0.249 4.249 24 H 0.065 0.935 25 C 0.001 3.999 26 N -0.902 5.902 27 Si 0.900 3.100 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.289 1.289 31 C 0.155 3.845 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.406 0.594 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.049 0.951 48 H 0.085 0.915 49 H 0.017 0.983 50 H 0.252 0.748 51 H 0.016 0.984 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 1.896 -22.196 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.105 0.895 4 N -0.355 5.355 5 C 0.388 3.612 6 O -0.410 6.410 7 C -0.162 4.162 8 N -0.094 5.094 9 N -0.087 5.087 10 H 0.288 0.712 11 C -0.122 4.122 12 C -0.153 4.153 13 C -0.080 4.080 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.086 4.086 17 C -0.131 4.131 18 H 0.090 0.910 19 C -0.139 4.139 20 C -0.181 4.181 21 C 0.043 3.957 22 N -0.314 5.314 23 C -0.379 4.379 24 H 0.082 0.918 25 C -0.197 4.197 26 N -0.547 5.547 27 Si 0.730 3.270 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.216 1.216 31 C 0.029 3.971 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.242 0.758 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.103 0.897 49 H 0.035 0.965 50 H 0.062 0.938 51 H 0.034 0.966 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.296 1.803 -21.398 23.400 hybrid contribution 0.802 -1.280 -0.303 1.540 sum -8.494 0.523 -21.701 23.310 Atomic orbital electron populations 1.22203 0.95668 1.01887 1.02156 1.21084 0.93496 0.97557 0.83528 0.89454 1.45965 1.65947 1.14532 1.09096 1.16838 0.77337 0.85669 0.81390 1.90760 1.50915 1.14797 1.84574 1.21678 1.07953 0.90867 0.95745 1.73893 1.16357 1.17201 1.01944 1.42976 1.48055 1.11689 1.05942 0.71163 1.21153 1.07210 0.87617 0.96171 1.19877 1.06466 0.97321 0.91676 1.19976 1.00719 0.91086 0.96237 1.21677 1.00872 0.98143 0.95257 1.21560 1.01121 0.93621 0.98901 1.20221 1.01536 0.99399 0.87414 1.21952 0.99522 0.99213 0.92407 0.91039 1.21445 0.98737 0.99047 0.94643 1.22177 1.00853 0.99343 0.95723 1.20783 0.87489 0.97218 0.90202 1.44043 1.49912 1.37888 0.99511 1.19210 1.10927 1.01850 1.05909 0.91775 1.25035 0.97282 0.97436 0.99966 1.70046 1.37813 1.29257 1.17570 0.86255 0.79064 0.83928 0.77725 1.20303 1.21797 1.21591 1.20861 0.89884 0.96383 0.89997 0.92605 0.92708 0.91255 0.75826 0.90710 0.89651 0.91643 0.91179 0.90953 0.91344 0.89895 0.90381 0.92581 0.93109 0.92834 0.93233 0.89660 0.96522 0.93750 0.96572 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.14 37.16 0.34 -1.80 16 2 C 0.15 2.27 2.16 -67.93 -0.15 2.13 16 3 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 4 N -0.71 -10.76 4.47 -54.79 -0.25 -11.00 16 5 C 0.60 9.75 7.79 -12.39 -0.10 9.65 16 6 O -0.54 -9.66 15.47 5.30 0.08 -9.58 16 7 C 0.00 -0.04 7.12 -82.99 -0.59 -0.63 16 8 N -0.26 -3.42 11.96 33.28 0.40 -3.03 16 9 N -0.37 -3.65 6.82 33.42 0.23 -3.42 16 10 H 0.44 2.66 8.96 -190.21 -1.70 0.96 16 11 C 0.01 0.05 7.12 -82.45 -0.59 -0.53 16 12 C -0.14 -1.78 5.99 -104.88 -0.63 -2.41 16 13 C -0.04 -0.46 5.54 -27.80 -0.15 -0.61 16 14 C -0.12 -0.93 5.91 -26.43 -0.16 -1.09 16 15 C -0.11 -0.68 5.89 -26.46 -0.16 -0.84 16 16 C -0.05 -0.28 6.31 -27.67 -0.17 -0.46 16 17 C -0.11 -1.90 1.98 -90.50 -0.18 -2.08 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.10 -1.69 4.85 -26.67 -0.13 -1.82 16 20 C -0.14 -2.72 6.09 -26.60 -0.16 -2.88 16 21 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 22 N -0.59 -15.02 3.00 -172.32 -0.52 -15.54 16 23 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 24 H 0.06 1.76 7.89 -52.48 -0.41 1.34 16 25 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 26 N -0.90 -26.58 11.20 55.49 0.62 -25.96 16 27 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 31 C 0.16 3.34 5.55 -3.71 -0.02 3.32 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.85 6.41 -51.93 -0.33 0.52 16 35 H 0.41 6.01 8.16 -40.82 -0.33 5.67 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.07 7.67 -51.93 -0.40 0.67 16 38 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.73 6.37 -51.93 -0.33 0.40 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 51 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 52 H 0.05 1.11 7.44 -51.93 -0.39 0.72 16 LS Contribution 401.97 15.07 6.06 6.06 Total: -1.00 -33.20 401.97 -11.58 -44.78 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -10.08 Total: 3.90 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -3.09 Total: -3.11 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.49 Total: -58.95 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.20 -11.58 -44.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025467185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.461 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds