Wall clock time and date at job start Wed Apr 1 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 N 1.46500 * 109.46896 * 239.99919 * 2 1 3 5 5 C 1.34781 * 119.99871 * 85.00075 * 4 2 1 6 6 O 1.21577 * 119.99685 * 0.02562 * 5 4 2 7 7 C 1.47709 * 120.00188 * 179.97438 * 5 4 2 8 8 N 1.32204 * 126.67678 * 359.69351 * 7 5 4 9 9 N 1.28852 * 110.14832 * 179.80663 * 8 7 5 10 10 H 0.96997 * 124.97316 * 180.09511 * 9 8 7 11 11 C 1.34312 * 110.04281 * 0.39354 * 9 8 7 12 12 C 1.35586 * 107.21405 * 359.83693 * 11 9 8 13 13 C 1.50379 * 124.61588 * 179.78658 * 12 11 9 14 14 C 1.53463 * 108.29103 * 343.76718 * 13 12 11 15 15 C 1.53110 * 109.51632 * 49.47357 * 14 13 12 16 16 C 1.50710 * 128.90395 * 179.87949 * 11 9 8 17 17 C 1.52998 * 109.47298 * 120.00428 * 2 1 3 18 18 H 1.09005 * 109.52424 * 59.91283 * 17 2 1 19 19 C 1.53041 * 109.49655 * 299.83927 * 17 2 1 20 20 C 1.53070 * 109.65895 * 178.74768 * 19 17 2 21 21 C 1.53192 * 109.29486 * 61.15317 * 20 19 17 22 22 N 1.46923 * 108.89086 * 305.57609 * 21 20 19 23 23 C 1.36938 * 120.62890 * 233.55909 * 22 21 20 24 24 H 1.08011 * 119.99821 * 151.82869 * 23 22 21 25 25 C 1.38810 * 120.00150 * 331.82504 * 23 22 21 26 26 N 1.31613 * 120.00273 * 343.07447 * 25 23 22 27 27 Si 1.86803 * 119.99828 * 163.06738 * 25 23 22 28 28 H 1.48503 * 109.47179 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.47229 * 120.00279 * 27 25 23 30 30 H 1.48502 * 109.47136 * 240.00365 * 27 25 23 31 31 C 1.46928 * 118.73969 * 53.53853 * 22 21 20 32 32 H 1.08999 * 109.47018 * 59.99567 * 1 2 3 33 33 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46896 * 299.99539 * 1 2 3 35 35 H 0.96997 * 120.00877 * 264.99723 * 4 2 1 36 36 H 1.09000 * 109.70507 * 103.45358 * 13 12 11 37 37 H 1.09003 * 109.69652 * 224.05276 * 13 12 11 38 38 H 1.09001 * 109.45486 * 289.46498 * 14 13 12 39 39 H 1.08999 * 109.46134 * 169.48906 * 14 13 12 40 40 H 1.09000 * 109.44208 * 169.90461 * 15 14 13 41 41 H 1.08999 * 109.41107 * 49.99253 * 15 14 13 42 42 H 1.09000 * 109.68687 * 283.01285 * 16 11 9 43 43 H 1.08990 * 109.68976 * 43.55734 * 16 11 9 44 44 H 1.09004 * 109.45782 * 298.70130 * 19 17 2 45 45 H 1.08998 * 109.46417 * 58.67464 * 19 17 2 46 46 H 1.08996 * 109.39171 * 301.27441 * 20 19 17 47 47 H 1.09003 * 109.62547 * 181.16407 * 20 19 17 48 48 H 1.09002 * 109.58742 * 185.72218 * 21 20 19 49 49 H 1.08998 * 109.59351 * 65.43846 * 21 20 19 50 50 H 0.96997 * 120.00271 * 180.02562 * 26 25 23 51 51 H 1.09004 * 109.58144 * 66.18005 * 31 22 21 52 52 H 1.08998 * 109.58393 * 186.45981 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4116 7 6 2.6399 -0.7144 -3.5631 8 7 2.9960 -1.9845 -3.6516 9 7 3.3723 -2.2572 -4.8534 10 1 3.6763 -3.1268 -5.1570 11 6 3.2880 -1.1593 -5.6225 12 6 2.8271 -0.1542 -4.8379 13 6 2.5900 1.2550 -5.3062 14 6 3.3224 1.4487 -6.6408 15 6 2.9740 0.2967 -7.5873 16 6 3.6223 -0.9990 -7.0833 17 6 2.0401 -0.7213 1.2492 18 1 1.6759 -1.7488 1.2507 19 6 1.5336 0.0019 2.4992 20 6 2.0159 -0.7348 3.7513 21 6 3.5476 -0.7382 3.7781 22 7 4.0442 -1.3006 2.5149 23 6 4.9301 -2.3449 2.5166 24 1 4.9508 -3.0369 1.6876 25 6 5.8015 -2.5140 3.5838 26 7 6.0199 -1.5205 4.4189 27 14 6.6641 -4.1518 3.8347 28 1 6.2515 -5.0974 2.7666 29 1 8.1344 -3.9510 3.7765 30 1 6.2926 -4.7090 5.1602 31 6 3.5719 -0.7217 1.2498 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.2491 -1.6318 -1.1528 36 1 1.5219 1.4211 -5.4460 37 1 2.9781 1.9575 -4.5685 38 1 4.3982 1.4623 -6.4659 39 1 3.0154 2.3933 -7.0898 40 1 3.3454 0.5233 -8.5867 41 1 1.8918 0.1713 -7.6222 42 1 4.7036 -0.9415 -7.2083 43 1 3.2323 -1.8480 -7.6446 44 1 1.9183 1.0217 2.5096 45 1 0.4439 0.0249 2.4890 46 1 1.6501 -1.7613 3.7307 47 1 1.6377 -0.2311 4.6409 48 1 3.8971 -1.3474 4.6117 49 1 3.9134 0.2822 3.8926 50 1 6.6292 -1.6385 5.1644 51 1 3.9377 0.3009 1.1569 52 1 3.9396 -1.3185 0.4151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025467185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:51 Heat of formation + Delta-G solvation = 10.755839 kcal Electronic energy + Delta-G solvation = -31201.359851 eV Core-core repulsion = 27200.698142 eV Total energy + Delta-G solvation = -4000.661710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.85209 -40.85425 -39.32955 -37.82315 -36.69438 -34.70688 -33.74127 -32.56171 -32.10236 -30.91706 -30.44207 -29.82081 -27.17292 -25.83591 -24.69236 -24.29189 -23.61892 -23.06167 -21.83999 -21.36622 -20.49061 -19.96129 -18.79305 -18.66649 -17.93716 -17.19684 -16.89066 -16.80958 -15.93360 -15.87029 -15.48543 -15.30505 -15.15244 -14.96281 -14.69305 -14.67654 -14.54234 -14.14804 -14.07971 -14.02344 -13.98508 -13.64662 -13.26878 -13.01803 -12.97953 -12.81464 -12.62448 -12.27228 -12.23274 -11.96486 -11.86735 -11.79092 -11.71820 -11.66704 -11.59721 -11.50176 -11.29129 -11.11861 -10.93564 -10.55743 -10.42315 -10.01662 -9.62297 -8.68632 -7.88318 -5.34703 0.49620 1.08782 1.44017 1.45222 1.56364 1.85583 2.23628 2.35797 2.49158 3.25585 3.36039 3.53831 3.64152 3.86677 3.92582 4.00560 4.04613 4.06297 4.20414 4.30149 4.35441 4.36224 4.44929 4.51643 4.60561 4.63267 4.66947 4.76460 4.76691 4.86162 4.87331 4.94118 4.99016 5.04874 5.06928 5.10695 5.15630 5.23899 5.25936 5.26635 5.33140 5.34221 5.45854 5.48959 5.51577 5.52197 5.57523 5.66219 5.78253 6.11393 6.37450 6.47018 6.85490 7.13622 7.17141 7.84544 8.36997 9.17886 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.002764 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.983229 B =10127.639657 C =11669.250519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.069 0.931 4 N -0.703 5.703 5 C 0.600 3.400 6 O -0.563 6.563 7 C -0.034 4.034 8 N -0.277 5.277 9 N -0.358 5.358 10 H 0.461 0.539 11 C 0.026 3.974 12 C -0.172 4.172 13 C -0.041 4.041 14 C -0.118 4.118 15 C -0.111 4.111 16 C -0.046 4.046 17 C -0.093 4.093 18 H 0.076 0.924 19 C -0.097 4.097 20 C -0.130 4.130 21 C 0.172 3.828 22 N -0.608 5.608 23 C -0.261 4.261 24 H 0.065 0.935 25 C -0.052 4.052 26 N -0.936 5.936 27 Si 0.968 3.032 28 H -0.266 1.266 29 H -0.293 1.293 30 H -0.288 1.288 31 C 0.157 3.843 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.409 0.591 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.052 0.948 49 H -0.010 1.010 50 H 0.250 0.750 51 H -0.004 1.004 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.426 0.433 -24.655 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.087 0.913 4 N -0.353 5.353 5 C 0.385 3.615 6 O -0.440 6.440 7 C -0.192 4.192 8 N -0.114 5.114 9 N -0.073 5.073 10 H 0.309 0.691 11 C -0.103 4.103 12 C -0.182 4.182 13 C -0.080 4.080 14 C -0.155 4.155 15 C -0.149 4.149 16 C -0.084 4.084 17 C -0.113 4.113 18 H 0.094 0.906 19 C -0.135 4.135 20 C -0.169 4.169 21 C 0.047 3.953 22 N -0.332 5.332 23 C -0.391 4.391 24 H 0.082 0.918 25 C -0.247 4.247 26 N -0.582 5.582 27 Si 0.796 3.204 28 H -0.190 1.190 29 H -0.220 1.220 30 H -0.214 1.214 31 C 0.031 3.969 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.008 0.992 50 H 0.059 0.941 51 H 0.014 0.986 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.449 0.316 -23.874 26.063 hybrid contribution 1.222 -0.801 0.397 1.514 sum -9.227 -0.485 -23.478 25.230 Atomic orbital electron populations 1.22124 0.93294 1.02827 1.02711 1.20972 0.95165 0.96177 0.82713 0.91265 1.45956 1.65845 1.14542 1.08964 1.17134 0.76872 0.85469 0.82027 1.90728 1.52247 1.15930 1.85139 1.21598 1.09852 0.91795 0.95994 1.73804 1.17242 1.16722 1.03679 1.43086 1.46547 1.12660 1.05014 0.69091 1.21711 1.04573 0.86389 0.97580 1.20197 1.07835 0.98689 0.91507 1.19950 1.00682 0.89913 0.97429 1.21668 1.00189 0.99852 0.93836 1.21583 1.01147 0.92626 0.99566 1.20464 1.02735 1.00554 0.84656 1.21725 0.95878 0.99898 0.93838 0.90595 1.21448 1.01015 0.98174 0.92816 1.22010 0.96539 1.00217 0.98105 1.20648 0.91077 0.94745 0.88838 1.44312 1.50043 1.37808 1.00988 1.19528 1.11187 1.02491 1.05927 0.91777 1.25826 0.98355 1.00649 0.99907 1.70205 1.38727 1.31183 1.18092 0.85204 0.77485 0.80005 0.77738 1.19002 1.22030 1.21422 1.20917 0.92990 0.94672 0.88294 0.93151 0.91508 0.89588 0.75548 0.91298 0.92501 0.91862 0.89956 0.88237 0.91596 0.88214 0.87488 0.92976 0.89183 0.92684 0.90921 0.92932 0.99158 0.94118 0.98581 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.14 71.98 0.66 -3.09 16 2 C 0.15 4.71 2.16 44.99 0.10 4.80 16 3 H 0.07 2.39 7.58 -2.39 -0.02 2.37 16 4 N -0.70 -21.84 4.47 -445.52 -1.99 -23.84 16 5 C 0.60 20.14 7.79 86.75 0.68 20.81 16 6 O -0.56 -21.35 15.47 -3.96 -0.06 -21.41 16 7 C -0.03 -1.02 7.12 42.14 0.30 -0.72 16 8 N -0.28 -7.29 11.96 -48.62 -0.58 -7.87 16 9 N -0.36 -6.41 6.82 -48.18 -0.33 -6.74 16 10 H 0.46 4.44 8.96 -219.80 -1.97 2.47 16 11 C 0.03 0.45 7.12 41.57 0.30 0.75 16 12 C -0.17 -4.28 5.99 -20.03 -0.12 -4.40 16 13 C -0.04 -0.93 5.54 29.90 0.17 -0.76 16 14 C -0.12 -1.64 5.91 30.79 0.18 -1.46 16 15 C -0.11 -0.98 5.89 30.77 0.18 -0.80 16 16 C -0.05 -0.38 6.31 29.99 0.19 -0.19 16 17 C -0.09 -3.15 1.98 -10.72 -0.02 -3.17 16 18 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 19 C -0.10 -3.08 4.85 30.63 0.15 -2.94 16 20 C -0.13 -4.85 6.09 30.68 0.19 -4.66 16 21 C 0.17 8.60 5.30 86.36 0.46 9.06 16 22 N -0.61 -31.75 3.00 -699.10 -2.09 -33.84 16 23 C -0.26 -14.82 9.58 84.03 0.81 -14.01 16 24 H 0.06 3.56 7.89 -2.90 -0.02 3.54 16 25 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16 26 N -0.94 -56.96 11.20 21.65 0.24 -56.72 16 27 Si 0.97 45.78 29.59 68.60 2.03 47.81 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 29 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 30 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 31 C 0.16 6.93 5.55 86.36 0.48 7.41 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.84 6.41 -2.39 -0.02 1.83 16 35 H 0.41 12.25 8.16 -92.71 -0.76 11.49 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.55 7.67 -2.39 -0.02 1.53 16 38 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.07 0.65 8.11 -2.39 -0.02 0.63 16 42 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.09 2.25 6.37 -2.39 -0.02 2.24 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.05 2.95 6.06 -2.39 -0.01 2.93 16 49 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 50 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 51 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 52 H 0.04 2.01 7.44 -2.39 -0.02 1.99 16 Total: -1.00 -75.93 401.97 0.52 -75.40 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -1.79 Total: 23.15 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.10 Total: 4.05 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -4.75 Total: -129.01 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.41 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.93 0.52 -75.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025467185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.160 kcal (2) G-P(sol) polarization free energy of solvation -75.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds