Wall clock time and date at job start Wed Apr 1 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46954 * 2 1 4 4 N 1.46501 * 109.46858 * 240.00811 * 2 1 3 5 5 C 1.34776 * 120.00249 * 84.99666 * 4 2 1 6 6 O 1.21578 * 119.99820 * 0.02562 * 5 4 2 7 7 C 1.47709 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.32210 * 126.67741 * 0.02562 * 7 5 4 9 9 N 1.28842 * 110.14990 * 179.97438 * 8 7 5 10 10 H 0.97001 * 124.97292 * 179.97438 * 9 8 7 11 11 C 1.34309 * 110.04327 * 359.95319 * 9 8 7 12 12 C 1.35583 * 107.21800 * 359.87537 * 11 9 8 13 13 C 1.50380 * 124.61952 * 179.44094 * 12 11 9 14 14 C 1.53479 * 108.33786 * 344.26490 * 13 12 11 15 15 C 1.53110 * 109.50845 * 49.28348 * 14 13 12 16 16 C 1.50713 * 128.90298 * 180.19828 * 11 9 8 17 17 C 1.52992 * 109.47661 * 120.00559 * 2 1 3 18 18 H 1.09006 * 109.50035 * 180.02562 * 17 2 1 19 19 C 1.53040 * 109.52580 * 300.14540 * 17 2 1 20 20 C 1.53039 * 109.54198 * 181.32921 * 19 17 2 21 21 C 1.53622 * 109.24473 * 298.51455 * 20 19 17 22 22 N 1.46924 * 108.54399 * 54.84806 * 21 20 19 23 23 C 1.36946 * 120.62919 * 126.37114 * 22 21 20 24 24 H 1.08001 * 119.99879 * 207.53220 * 23 22 21 25 25 C 1.38814 * 119.99719 * 27.52961 * 23 22 21 26 26 N 1.31620 * 119.99709 * 25.84717 * 25 23 22 27 27 Si 1.86797 * 119.99712 * 205.56717 * 25 23 22 28 28 H 1.48493 * 109.47196 * 60.00574 * 27 25 23 29 29 H 1.48500 * 109.46719 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47268 * 299.99796 * 27 25 23 31 31 C 1.46928 * 118.74378 * 306.10142 * 22 21 20 32 32 H 1.08999 * 109.46590 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46656 * 299.99178 * 1 2 3 34 34 H 1.08994 * 109.47590 * 59.99276 * 1 2 3 35 35 H 0.97001 * 119.99882 * 264.99312 * 4 2 1 36 36 H 1.08999 * 109.84539 * 224.45119 * 13 12 11 37 37 H 1.08998 * 109.53707 * 103.89749 * 13 12 11 38 38 H 1.09001 * 109.46191 * 289.26650 * 14 13 12 39 39 H 1.09000 * 109.45467 * 169.29016 * 14 13 12 40 40 H 1.08993 * 109.44280 * 169.88776 * 15 14 13 41 41 H 1.08996 * 109.41485 * 49.96945 * 15 14 13 42 42 H 1.08997 * 109.69098 * 283.01562 * 16 11 9 43 43 H 1.08996 * 109.69056 * 43.55480 * 16 11 9 44 44 H 1.08999 * 109.46221 * 301.35296 * 19 17 2 45 45 H 1.09003 * 109.45556 * 61.30999 * 19 17 2 46 46 H 1.09004 * 109.49499 * 58.58593 * 20 19 17 47 47 H 1.08994 * 109.49949 * 178.64805 * 20 19 17 48 48 H 1.09007 * 109.73672 * 295.11836 * 21 20 19 49 49 H 1.08997 * 109.67035 * 174.54572 * 21 20 19 50 50 H 0.96992 * 120.00366 * 4.05609 * 26 25 23 51 51 H 1.08992 * 109.58848 * 173.64203 * 31 22 21 52 52 H 1.08997 * 109.58525 * 294.06878 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0180 -2.3572 6 8 1.8582 1.1617 -2.4115 7 6 2.6387 -0.7143 -3.5635 8 7 2.9881 -1.9862 -3.6539 9 7 3.3689 -2.2576 -4.8545 10 1 3.6712 -3.1277 -5.1586 11 6 3.2856 -1.1594 -5.6232 12 6 2.8213 -0.1552 -4.8394 13 6 2.5911 1.2558 -5.3058 14 6 3.3231 1.4487 -6.6409 15 6 2.9719 0.2976 -7.5874 16 6 3.6186 -0.9993 -7.0843 17 6 2.0401 -0.7213 1.2491 18 1 3.1302 -0.7211 1.2497 19 6 1.5277 -0.0031 2.4996 20 6 2.0649 -0.7047 3.7491 21 6 1.5501 -2.1518 3.7780 22 7 1.9189 -2.8043 2.5143 23 6 2.6074 -3.9881 2.5153 24 1 3.2477 -4.2411 1.6832 25 6 2.4823 -4.8628 3.5859 26 7 1.3919 -4.8492 4.3229 27 14 3.8584 -6.0644 3.9759 28 1 5.1039 -5.3118 4.2713 29 1 3.4816 -6.8819 5.1569 30 1 4.0831 -6.9553 2.8092 31 6 1.5298 -2.1658 1.2496 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 -0.3634 0.5139 -0.8898 35 1 2.2490 -1.6316 -1.1528 36 1 2.9808 1.9575 -4.5683 37 1 1.5232 1.4242 -5.4446 38 1 4.3990 1.4605 -6.4667 39 1 3.0173 2.3939 -7.0893 40 1 3.3428 0.5238 -8.5870 41 1 1.8895 0.1738 -7.6214 42 1 4.6998 -0.9436 -7.2106 43 1 3.2266 -1.8475 -7.6454 44 1 1.8690 1.0320 2.4894 45 1 0.4380 -0.0259 2.5105 46 1 3.1547 -0.7041 3.7265 47 1 1.7192 -0.1785 4.6388 48 1 0.4655 -2.1546 3.8877 49 1 2.0051 -2.6865 4.6117 50 1 0.6517 -4.2700 4.0832 51 1 1.9715 -2.7096 0.4146 52 1 0.4438 -2.1697 1.1572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025467187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:57 Heat of formation + Delta-G solvation = 10.557194 kcal Electronic energy + Delta-G solvation = -31207.431237 eV Core-core repulsion = 27206.760913 eV Total energy + Delta-G solvation = -4000.670324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.88829 -40.99520 -39.53374 -37.84209 -36.87833 -34.85160 -33.77215 -32.42028 -32.23416 -30.93903 -30.44360 -29.51531 -27.07572 -26.07986 -24.75517 -24.57392 -23.88690 -23.08149 -22.01432 -21.12404 -20.16257 -20.00249 -19.36457 -18.76722 -18.04847 -17.20643 -16.89515 -16.34039 -16.23465 -15.82442 -15.57402 -15.45737 -15.43835 -15.09321 -14.96056 -14.69677 -14.55822 -14.40201 -14.11957 -14.01832 -13.87687 -13.66172 -13.56367 -12.99519 -12.93356 -12.77178 -12.63316 -12.13455 -11.92989 -11.92300 -11.88010 -11.76693 -11.72187 -11.69146 -11.64109 -11.58301 -11.40436 -11.11207 -11.02548 -10.46840 -10.43489 -10.09038 -9.65184 -8.89917 -8.26777 -5.38523 0.45160 1.06102 1.56258 1.63869 1.81960 1.82797 2.18828 2.29827 2.64266 3.20544 3.31998 3.45940 3.61755 3.80874 3.85874 3.87535 3.95819 4.04479 4.16907 4.22976 4.25704 4.33195 4.35423 4.36513 4.52379 4.55853 4.58981 4.65673 4.72231 4.74445 4.76288 4.87080 4.93063 4.97539 5.02906 5.05486 5.09815 5.14319 5.14764 5.22691 5.24585 5.28199 5.32383 5.35876 5.46272 5.47377 5.50078 5.56277 5.83393 6.08263 6.39092 6.40091 6.81105 7.06622 7.10261 7.78754 8.23470 8.99809 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.002613 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.398991 B =10713.810746 C =12257.419415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.087 0.913 4 N -0.708 5.708 5 C 0.601 3.399 6 O -0.559 6.559 7 C -0.035 4.035 8 N -0.282 5.282 9 N -0.358 5.358 10 H 0.461 0.539 11 C 0.026 3.974 12 C -0.170 4.170 13 C -0.041 4.041 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.046 4.046 17 C -0.097 4.097 18 H 0.060 0.940 19 C -0.097 4.097 20 C -0.127 4.127 21 C 0.153 3.847 22 N -0.616 5.616 23 C -0.356 4.356 24 H 0.047 0.953 25 C -0.075 4.075 26 N -0.941 5.941 27 Si 1.113 2.887 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.276 1.276 31 C 0.155 3.845 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.406 0.594 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.077 0.923 48 H 0.007 0.993 49 H 0.041 0.959 50 H 0.254 0.746 51 H 0.042 0.958 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 11.438 -24.778 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.053 3.947 3 H 0.105 0.895 4 N -0.359 5.359 5 C 0.386 3.614 6 O -0.437 6.437 7 C -0.194 4.194 8 N -0.119 5.119 9 N -0.073 5.073 10 H 0.309 0.691 11 C -0.102 4.102 12 C -0.180 4.180 13 C -0.080 4.080 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.084 4.084 17 C -0.117 4.117 18 H 0.078 0.922 19 C -0.135 4.135 20 C -0.166 4.166 21 C 0.027 3.973 22 N -0.341 5.341 23 C -0.485 4.485 24 H 0.065 0.935 25 C -0.271 4.271 26 N -0.583 5.583 27 Si 0.938 3.062 28 H -0.208 1.208 29 H -0.217 1.217 30 H -0.202 1.202 31 C 0.030 3.970 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.025 0.975 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.060 0.940 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.468 10.127 -23.081 25.598 hybrid contribution -0.573 0.503 -1.010 1.266 sum 3.895 10.630 -24.091 26.618 Atomic orbital electron populations 1.22202 0.94511 1.02189 1.02683 1.20948 0.94714 0.96437 0.82576 0.89492 1.46103 1.65889 1.14605 1.09256 1.17134 0.76823 0.85516 0.81903 1.90723 1.52119 1.15761 1.85065 1.21609 1.10029 0.91673 0.96061 1.73841 1.17380 1.16755 1.03943 1.43100 1.46405 1.12693 1.05115 0.69129 1.21746 1.04478 0.86374 0.97610 1.20200 1.07703 0.98818 0.91286 1.19964 1.00656 0.89759 0.97583 1.21664 1.00314 0.99743 0.93696 1.21591 1.01038 0.92715 0.99705 1.20471 1.02888 1.00509 0.84538 1.21711 0.99935 0.95924 0.94146 0.92186 1.21437 1.00790 0.98780 0.92463 1.22002 1.00136 0.95897 0.98529 1.20951 0.95352 0.92306 0.88663 1.44336 1.66128 1.22621 1.00994 1.20178 1.22071 0.97288 1.09005 0.93474 1.27139 1.02198 1.00577 0.97232 1.70902 1.03880 1.38978 1.44528 0.82877 0.72987 0.74197 0.76173 1.20756 1.21706 1.20220 1.21029 0.96210 0.91803 0.87959 0.92757 0.89809 0.92797 0.75739 0.92075 0.91549 0.91533 0.89907 0.88171 0.91854 0.87923 0.87724 0.90086 0.91230 0.93267 0.90479 0.97537 0.93997 0.93562 0.93981 0.95939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 8.79 71.98 0.63 -3.86 16 2 C 0.16 4.81 2.41 44.99 0.11 4.92 16 3 H 0.09 2.67 7.58 -2.38 -0.02 2.65 16 4 N -0.71 -22.45 5.00 -445.53 -2.23 -24.68 16 5 C 0.60 19.79 7.79 86.75 0.68 20.46 16 6 O -0.56 -20.27 15.47 -3.96 -0.06 -20.33 16 7 C -0.04 -1.05 7.12 42.14 0.30 -0.75 16 8 N -0.28 -7.56 11.96 -48.62 -0.58 -8.15 16 9 N -0.36 -6.48 6.82 -48.18 -0.33 -6.81 16 10 H 0.46 4.66 8.96 -219.80 -1.97 2.69 16 11 C 0.03 0.45 7.12 41.57 0.30 0.74 16 12 C -0.17 -4.08 5.99 -20.03 -0.12 -4.20 16 13 C -0.04 -0.87 5.54 29.91 0.17 -0.70 16 14 C -0.12 -1.45 5.91 30.79 0.18 -1.27 16 15 C -0.11 -0.92 5.89 30.77 0.18 -0.74 16 16 C -0.05 -0.36 6.31 29.99 0.19 -0.17 16 17 C -0.10 -3.30 2.33 -10.72 -0.02 -3.32 16 18 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 19 C -0.10 -3.03 4.77 30.62 0.15 -2.88 16 20 C -0.13 -4.66 6.10 30.82 0.19 -4.47 16 21 C 0.15 7.29 4.72 86.51 0.41 7.70 16 22 N -0.62 -31.32 2.85 -698.25 -1.99 -33.31 16 23 C -0.36 -20.26 9.49 84.03 0.80 -19.46 16 24 H 0.05 2.70 7.95 -2.91 -0.02 2.68 16 25 C -0.07 -4.33 4.66 84.86 0.40 -3.93 16 26 N -0.94 -58.04 12.46 21.65 0.27 -57.77 16 27 Si 1.11 51.75 29.99 68.60 2.06 53.81 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 29 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 30 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 31 C 0.16 6.50 5.29 86.36 0.46 6.95 16 32 H 0.05 1.65 6.32 -2.39 -0.02 1.63 16 33 H 0.08 2.12 6.46 -2.38 -0.02 2.10 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.41 13.21 6.70 -92.71 -0.62 12.59 16 36 H 0.06 1.53 7.68 -2.39 -0.02 1.51 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 0.81 8.12 -2.39 -0.02 0.80 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.06 0.62 8.11 -2.39 -0.02 0.60 16 42 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 2.09 6.50 -2.39 -0.02 2.07 16 46 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 47 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.01 0.32 7.87 -2.38 -0.02 0.31 16 49 H 0.04 2.28 6.31 -2.39 -0.02 2.26 16 50 H 0.25 15.98 6.69 -92.71 -0.62 15.36 16 51 H 0.04 1.79 6.52 -2.39 -0.02 1.78 16 52 H 0.02 0.96 6.18 -2.39 -0.01 0.94 16 Total: -1.00 -75.31 395.45 0.63 -74.69 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -1.49 Total: 27.54 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 4.98 Total: -4.99 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -4.85 Total: -130.71 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.06 Total: -20.33 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.06 Total: 53.81 kcal Total: -75.31 0.63 -74.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025467187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.243 kcal (2) G-P(sol) polarization free energy of solvation -75.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds