Wall clock time and date at job start Wed Apr 1 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46885 * 2 1 4 4 N 1.46503 * 109.47078 * 119.99565 * 2 1 3 5 5 C 1.34778 * 120.00150 * 274.99999 * 4 2 1 6 6 O 1.21683 * 119.99775 * 5.59878 * 5 4 2 7 7 C 1.46760 * 119.99717 * 185.60222 * 5 4 2 8 8 C 1.36834 * 126.90738 * 186.35928 * 7 5 4 9 9 N 1.33457 * 107.83208 * 179.97438 * 8 7 5 10 10 C 1.30551 * 109.68578 * 359.97438 * 9 8 7 11 11 N 1.34873 * 108.99039 * 359.82244 * 10 9 8 12 12 C 1.46445 * 124.99357 * 179.55571 * 11 10 9 13 13 C 1.53267 * 108.87328 * 343.41549 * 12 11 10 14 14 C 1.53162 * 109.44094 * 50.02989 * 13 12 11 15 15 C 1.51114 * 127.09347 * 180.02562 * 10 9 8 16 16 C 1.52999 * 109.46779 * 239.99800 * 2 1 3 17 17 H 1.08999 * 109.52315 * 300.07478 * 16 2 1 18 18 C 1.53038 * 109.50006 * 60.16207 * 16 2 1 19 19 C 1.53345 * 109.60676 * 181.32151 * 18 16 2 20 20 C 1.53185 * 109.15266 * 298.70948 * 19 18 16 21 21 N 1.46931 * 108.89041 * 54.58081 * 20 19 18 22 22 C 1.36939 * 120.63087 * 126.34113 * 21 20 19 23 23 H 1.07996 * 119.99957 * 332.44119 * 22 21 20 24 24 C 1.38811 * 119.99678 * 152.44312 * 22 21 20 25 25 N 1.31623 * 120.00309 * 343.83343 * 24 22 21 26 26 Si 1.86800 * 119.99819 * 163.84067 * 24 22 21 27 27 H 1.48496 * 109.47364 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47342 * 120.00169 * 26 24 22 29 29 H 1.48508 * 109.46951 * 239.99944 * 26 24 22 30 30 C 1.46931 * 118.73891 * 306.31993 * 21 20 19 31 31 H 1.08996 * 109.46933 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47019 * 300.00032 * 1 2 3 33 33 H 1.08997 * 109.47223 * 59.99978 * 1 2 3 34 34 H 0.96998 * 119.99478 * 95.00352 * 4 2 1 35 35 H 1.08004 * 126.08628 * 359.90310 * 8 7 5 36 36 H 1.08999 * 109.71839 * 223.50233 * 12 11 10 37 37 H 1.09001 * 109.38400 * 103.13057 * 12 11 10 38 38 H 1.09001 * 109.48045 * 290.03989 * 13 12 11 39 39 H 1.08996 * 109.47927 * 170.02144 * 13 12 11 40 40 H 1.08998 * 109.51092 * 170.73549 * 14 13 12 41 41 H 1.09000 * 109.54751 * 50.61295 * 14 13 12 42 42 H 1.09006 * 109.70718 * 283.68453 * 15 10 9 43 43 H 1.09006 * 109.70419 * 44.29830 * 15 10 9 44 44 H 1.09005 * 109.45909 * 301.33358 * 18 16 2 45 45 H 1.09002 * 109.46036 * 61.30668 * 18 16 2 46 46 H 1.08998 * 109.68310 * 178.74136 * 19 18 16 47 47 H 1.09008 * 109.47571 * 58.55074 * 19 18 16 48 48 H 1.08992 * 109.59105 * 294.72322 * 20 19 18 49 49 H 1.09004 * 109.58717 * 174.43306 * 20 19 18 50 50 H 0.96997 * 119.99941 * 180.02562 * 25 24 22 51 51 H 1.08996 * 109.58639 * 173.39814 * 30 21 20 52 52 H 1.08999 * 109.58106 * 293.68249 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3572 6 8 1.7628 1.1335 2.4391 7 6 2.7508 -0.6749 3.5225 8 6 2.8412 -0.1743 4.7928 9 7 3.4583 -1.0852 5.5481 10 6 3.7587 -2.1279 4.8222 11 7 3.3350 -1.9200 3.5588 12 6 3.5010 -2.8636 2.4513 13 6 4.5645 -3.8979 2.8364 14 6 4.2408 -4.4713 4.2193 15 6 4.4607 -3.3854 5.2800 16 6 2.0400 -0.7213 -1.2492 17 1 1.6760 -1.7487 -1.2507 18 6 1.5335 0.0019 -2.4992 19 6 2.0158 -0.7380 -3.7528 20 6 3.5474 -0.7381 -3.7782 21 7 4.0441 -1.3006 -2.5150 22 6 4.9307 -2.3443 -2.5167 23 1 4.9426 -3.0412 -3.3416 24 6 5.8140 -2.5063 -1.4582 25 7 6.0296 -1.5123 -0.6228 26 14 6.6968 -4.1352 -1.2196 27 1 6.2837 -5.0830 -2.2854 28 1 8.1641 -3.9181 -1.2911 29 1 6.3441 -4.6995 0.1081 30 6 3.5719 -0.7217 -1.2498 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.2491 -1.6317 1.1527 35 1 2.4787 0.7874 5.1248 36 1 3.8191 -2.3284 1.5567 37 1 2.5536 -3.3677 2.2604 38 1 5.5439 -3.4201 2.8613 39 1 4.5714 -4.7030 2.1017 40 1 4.8953 -5.3184 4.4244 41 1 3.2018 -4.7997 4.2438 42 1 5.5275 -3.1909 5.3918 43 1 4.0444 -3.7126 6.2328 44 1 0.4437 0.0251 -2.4888 45 1 1.9183 1.0217 -2.5097 46 1 1.6372 -0.2367 -4.6435 47 1 1.6522 -1.7654 -3.7308 48 1 3.9111 0.2831 -3.8914 49 1 3.8990 -1.3459 -4.6120 50 1 6.6471 -1.6255 0.1166 51 1 3.9375 -1.3199 -0.4152 52 1 3.9396 0.3001 -1.1558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025519434.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:23 Heat of formation + Delta-G solvation = 12.276087 kcal Electronic energy + Delta-G solvation = -32946.668715 eV Core-core repulsion = 28946.072928 eV Total energy + Delta-G solvation = -4000.595787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.57249 -40.88849 -39.35605 -37.72141 -36.63780 -35.02835 -34.38637 -32.75245 -31.57816 -31.00165 -30.25749 -29.75343 -27.12390 -25.81032 -25.08051 -23.99203 -23.69125 -22.98917 -21.77849 -21.65342 -20.74103 -20.14880 -18.74064 -18.62935 -17.32578 -17.22251 -17.02886 -16.70632 -15.96724 -15.88402 -15.68909 -15.44611 -15.21915 -15.17108 -14.97112 -14.93503 -14.76470 -14.64225 -14.13430 -14.07366 -13.88740 -13.68629 -13.40407 -12.96983 -12.94305 -12.73952 -12.65302 -12.39133 -12.19937 -12.14898 -12.09963 -11.99608 -11.91872 -11.72907 -11.53440 -11.49229 -11.31083 -11.11605 -10.96156 -10.77025 -10.55568 -10.22298 -9.51672 -8.66277 -7.83743 -5.31145 0.19531 1.42948 1.46430 1.50488 1.59127 1.71665 2.04648 2.23163 2.52276 3.18918 3.26279 3.37087 3.45748 3.53841 3.65121 3.76481 3.93763 4.03313 4.04134 4.10021 4.20225 4.27454 4.32237 4.35757 4.41722 4.42289 4.47138 4.63109 4.72851 4.73520 4.81414 4.83424 4.84232 4.85906 4.97322 5.01741 5.04172 5.08259 5.13579 5.18211 5.21014 5.23644 5.33601 5.40958 5.44264 5.48288 5.57135 5.66913 5.77303 5.97273 6.32324 6.39096 6.82325 7.00350 7.15746 7.86429 8.39758 9.20225 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008926 B = 0.005322 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.309005 B = 5259.709313 C = 7730.314189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.152 3.848 3 H 0.060 0.940 4 N -0.712 5.712 5 C 0.596 3.404 6 O -0.565 6.565 7 C -0.108 4.108 8 C 0.052 3.948 9 N -0.518 5.518 10 C 0.235 3.765 11 N -0.432 5.432 12 C 0.083 3.917 13 C -0.133 4.133 14 C -0.115 4.115 15 C -0.036 4.036 16 C -0.106 4.106 17 H 0.074 0.926 18 C -0.100 4.100 19 C -0.121 4.121 20 C 0.134 3.866 21 N -0.610 5.610 22 C -0.262 4.262 23 H 0.064 0.936 24 C -0.041 4.041 25 N -0.928 5.928 26 Si 0.952 3.048 27 H -0.273 1.273 28 H -0.305 1.305 29 H -0.263 1.263 30 C 0.191 3.809 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.401 0.599 35 H 0.188 0.812 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.004 0.996 49 H 0.051 0.949 50 H 0.246 0.754 51 H 0.069 0.931 52 H -0.027 1.027 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 -7.526 6.136 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.078 0.922 4 N -0.364 5.364 5 C 0.383 3.617 6 O -0.444 6.444 7 C -0.223 4.223 8 C -0.102 4.102 9 N -0.237 5.237 10 C -0.027 4.027 11 N -0.114 5.114 12 C -0.038 4.038 13 C -0.171 4.171 14 C -0.153 4.153 15 C -0.075 4.075 16 C -0.126 4.126 17 H 0.092 0.908 18 C -0.138 4.138 19 C -0.160 4.160 20 C 0.009 3.991 21 N -0.333 5.333 22 C -0.392 4.392 23 H 0.081 0.919 24 C -0.237 4.237 25 N -0.574 5.574 26 Si 0.780 3.220 27 H -0.198 1.198 28 H -0.233 1.233 29 H -0.188 1.188 30 C 0.065 3.935 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.239 0.761 35 H 0.205 0.795 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.138 0.862 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.022 0.978 49 H 0.070 0.930 50 H 0.056 0.944 51 H 0.087 0.913 52 H -0.009 1.009 Dipole moment (debyes) X Y Z Total from point charges -9.295 -6.749 6.899 13.400 hybrid contribution 1.102 -0.395 -0.959 1.513 sum -8.193 -7.145 5.940 12.388 Atomic orbital electron populations 1.22124 0.93036 1.02907 1.02779 1.21019 0.95278 0.95916 0.82995 0.92179 1.46252 1.66538 1.14265 1.09366 1.16974 0.77624 0.85247 0.81839 1.90766 1.51791 1.17805 1.84086 1.21011 1.13294 0.89840 0.98194 1.22818 0.99439 0.99822 0.88119 1.70008 1.18592 1.01868 1.33267 1.24320 0.99471 0.98627 0.80291 1.45499 1.41928 1.13193 1.10830 1.22444 1.02843 0.90841 0.87690 1.21925 0.97142 0.97851 1.00144 1.21708 1.04332 0.98025 0.91193 1.20580 1.00235 0.85936 1.00742 1.21945 0.97538 0.99473 0.93653 0.90783 1.21519 1.00991 0.98127 0.93171 1.21924 0.95529 1.00620 0.97884 1.21122 0.94092 0.95341 0.88590 1.44334 1.50103 1.37905 1.00927 1.19520 1.10879 1.02292 1.06497 0.91859 1.25684 0.97987 1.00153 0.99882 1.70245 1.38005 1.30821 1.18301 0.85459 0.77258 0.80437 0.78827 1.19751 1.23301 1.18830 1.20565 0.89422 0.94098 0.89446 0.91272 0.93331 0.89363 0.76115 0.79516 0.90277 0.87062 0.92039 0.87951 0.86929 0.89844 0.88077 0.86221 0.89348 0.93338 0.89895 0.92049 0.97793 0.93015 0.94430 0.91302 1.00896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.14 71.98 0.66 -3.17 16 2 C 0.15 4.94 2.12 44.99 0.10 5.03 16 3 H 0.06 2.27 7.66 -2.39 -0.02 2.25 16 4 N -0.71 -23.80 4.28 -446.41 -1.91 -25.71 16 5 C 0.60 22.14 7.74 86.47 0.67 22.81 16 6 O -0.56 -23.74 16.57 -4.29 -0.07 -23.81 16 7 C -0.11 -3.73 6.93 40.14 0.28 -3.45 16 8 C 0.05 1.77 11.68 84.12 0.98 2.75 16 9 N -0.52 -16.74 11.20 -186.67 -2.09 -18.83 16 10 C 0.24 6.59 7.63 138.30 1.06 7.65 16 11 N -0.43 -12.90 3.16 -501.17 -1.58 -14.48 16 12 C 0.08 2.19 5.20 86.48 0.45 2.64 16 13 C -0.13 -2.92 5.95 30.74 0.18 -2.73 16 14 C -0.11 -1.70 5.96 30.78 0.18 -1.52 16 15 C -0.04 -0.65 6.33 30.11 0.19 -0.46 16 16 C -0.11 -3.57 1.98 -10.72 -0.02 -3.59 16 17 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 18 C -0.10 -2.93 4.86 30.72 0.15 -2.78 16 19 C -0.12 -3.64 6.11 30.77 0.19 -3.45 16 20 C 0.13 5.34 6.50 86.36 0.56 5.90 16 21 N -0.61 -29.02 3.00 -699.10 -2.10 -31.11 16 22 C -0.26 -13.50 9.60 84.03 0.81 -12.69 16 23 H 0.06 3.23 7.88 -2.91 -0.02 3.20 16 24 C -0.04 -2.13 4.94 84.86 0.42 -1.71 16 25 N -0.93 -51.06 11.10 21.65 0.24 -50.82 16 26 Si 0.95 40.27 29.58 68.60 2.03 42.30 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.31 -13.62 7.11 99.48 0.71 -12.91 16 29 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 30 C 0.19 8.64 4.34 86.36 0.38 9.01 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.35 8.07 -2.39 -0.02 1.33 16 33 H 0.09 1.89 6.41 -2.39 -0.02 1.88 16 34 H 0.40 12.47 4.72 -92.71 -0.44 12.03 16 35 H 0.19 5.77 8.06 -2.91 -0.02 5.75 16 36 H 0.08 2.66 6.14 -2.39 -0.01 2.65 16 37 H 0.11 2.34 7.91 -2.39 -0.02 2.32 16 38 H 0.06 1.60 8.12 -2.39 -0.02 1.58 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 42 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.12 1.66 8.14 -2.38 -0.02 1.65 16 44 H 0.09 2.01 6.37 -2.38 -0.02 2.00 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.05 2.02 7.93 -2.38 -0.02 2.00 16 50 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 51 H 0.07 3.37 4.80 -2.39 -0.01 3.36 16 52 H -0.03 -1.44 8.14 -2.39 -0.02 -1.45 16 Total: -1.00 -68.80 397.26 2.23 -66.57 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.48 Total: 35.67 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 7.22 Total: 20.23 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -7.44 Total: -140.96 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.07 Total: -23.81 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -68.80 2.23 -66.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025519434.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.846 kcal (2) G-P(sol) polarization free energy of solvation -68.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds