Wall clock time and date at job start Wed Apr 1 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46956 * 2 1 4 4 N 1.46506 * 109.47203 * 119.99886 * 2 1 3 5 5 C 1.34773 * 119.99814 * 275.00490 * 4 2 1 6 6 O 1.21684 * 120.00601 * 355.04574 * 5 4 2 7 7 C 1.46771 * 119.99803 * 175.04616 * 5 4 2 8 8 C 1.36833 * 126.91210 * 185.34983 * 7 5 4 9 9 N 1.33448 * 107.83450 * 179.82229 * 8 7 5 10 10 C 1.30556 * 109.68384 * 0.42139 * 9 8 7 11 11 N 1.34873 * 108.98772 * 359.76989 * 10 9 8 12 12 C 1.46445 * 124.99133 * 179.90804 * 11 10 9 13 13 C 1.53265 * 108.82076 * 342.94462 * 12 11 10 14 14 C 1.53160 * 109.44117 * 50.22216 * 13 12 11 15 15 C 1.51121 * 127.09269 * 179.78592 * 10 9 8 16 16 C 1.52992 * 109.47639 * 240.00027 * 2 1 3 17 17 H 1.08997 * 109.50562 * 184.93628 * 16 2 1 18 18 C 1.53045 * 109.52401 * 64.84976 * 16 2 1 19 19 C 1.53038 * 109.53650 * 178.66879 * 18 16 2 20 20 C 1.52758 * 109.38569 * 61.24544 * 19 18 16 21 21 N 1.46924 * 109.00841 * 305.58654 * 20 19 18 22 22 C 1.36935 * 120.63138 * 233.58367 * 21 20 19 23 23 H 1.08004 * 120.00231 * 145.73553 * 22 21 20 24 24 C 1.38816 * 120.00046 * 325.73136 * 22 21 20 25 25 N 1.31615 * 119.99635 * 336.23968 * 24 22 21 26 26 Si 1.86798 * 119.99797 * 155.96143 * 24 22 21 27 27 H 1.48498 * 109.47304 * 60.00463 * 26 24 22 28 28 H 1.48500 * 109.46705 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47220 * 299.99800 * 26 24 22 30 30 C 1.46928 * 118.73894 * 53.30366 * 21 20 19 31 31 H 1.09000 * 109.46956 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47220 * 300.00207 * 1 2 3 33 33 H 1.09004 * 109.46859 * 60.00430 * 1 2 3 34 34 H 0.97002 * 120.00001 * 94.99841 * 4 2 1 35 35 H 1.07999 * 126.08251 * 359.95974 * 8 7 5 36 36 H 1.08999 * 109.58168 * 102.74645 * 12 11 10 37 37 H 1.09000 * 109.57769 * 223.01659 * 12 11 10 38 38 H 1.08992 * 109.47959 * 170.21738 * 13 12 11 39 39 H 1.09003 * 109.47624 * 290.23491 * 13 12 11 40 40 H 1.09003 * 109.50956 * 50.59664 * 14 13 12 41 41 H 1.09006 * 109.51072 * 170.74013 * 14 13 12 42 42 H 1.09003 * 109.70776 * 44.26561 * 15 10 9 43 43 H 1.09000 * 109.74193 * 283.66365 * 15 10 9 44 44 H 1.09001 * 109.46339 * 298.69382 * 18 16 2 45 45 H 1.08998 * 109.45637 * 58.65293 * 18 16 2 46 46 H 1.09004 * 109.49402 * 181.31880 * 19 18 16 47 47 H 1.08996 * 109.50153 * 301.38117 * 19 18 16 48 48 H 1.08999 * 109.51533 * 185.70113 * 20 19 18 49 49 H 1.09001 * 109.42956 * 65.41797 * 20 19 18 50 50 H 0.97000 * 120.00660 * 357.53343 * 25 24 22 51 51 H 1.09002 * 109.58169 * 66.43345 * 30 21 20 52 52 H 1.08997 * 109.59120 * 186.85588 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.9442 1.1811 2.3914 7 6 2.5316 -0.7327 3.5802 8 6 2.6038 -0.2163 4.8453 9 7 2.9876 -1.1965 5.6655 10 6 3.1682 -2.2951 4.9836 11 7 2.8977 -2.0546 3.6844 12 6 2.9894 -3.0456 2.6101 13 6 3.8274 -4.2312 3.1013 14 6 3.2973 -4.7024 4.4588 15 6 3.6072 -3.6384 5.5190 16 6 2.0401 -0.7212 -1.2491 17 1 3.1264 -0.7987 -1.2065 18 6 1.6327 0.0663 -2.4966 19 6 2.1712 -0.6372 -3.7445 20 6 1.5673 -2.0373 -3.8376 21 7 1.8256 -2.7544 -2.5815 22 6 2.4291 -3.9835 -2.5911 23 1 3.0950 -4.2645 -1.7886 24 6 2.1849 -4.8685 -3.6324 25 7 1.0776 -4.7666 -4.3365 26 14 3.4314 -6.1989 -4.0390 27 1 3.6199 -7.0785 -2.8575 28 1 2.9382 -7.0060 -5.1839 29 1 4.7273 -5.5696 -4.3996 30 6 1.4296 -2.1248 -1.3143 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6318 1.1527 35 1 2.3865 0.8026 5.1298 36 1 1.9900 -3.3899 2.3443 37 1 3.4649 -2.5962 1.7382 38 1 3.7597 -5.0470 2.3817 39 1 4.8678 -3.9229 3.2046 40 1 2.2193 -4.8515 4.3968 41 1 3.7801 -5.6406 4.7324 42 1 3.0632 -3.8641 6.4363 43 1 4.6781 -3.6220 5.7213 44 1 0.5455 0.1221 -2.5519 45 1 2.0454 1.0735 -2.4410 46 1 1.9007 -0.0634 -4.6308 47 1 3.2564 -0.7149 -3.6786 48 1 2.0248 -2.5767 -4.6670 49 1 0.4922 -1.9585 -3.9989 50 1 0.4157 -4.0962 -4.1054 51 1 0.3430 -2.0533 -1.2658 52 1 1.7962 -2.7218 -0.4794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025519436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:33 Heat of formation + Delta-G solvation = 8.787116 kcal Electronic energy + Delta-G solvation = -32141.777153 eV Core-core repulsion = 28141.030073 eV Total energy + Delta-G solvation = -4000.747080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.61778 -41.05465 -39.59667 -37.75681 -36.86566 -35.11842 -34.35460 -32.49974 -32.22264 -31.00288 -30.03746 -29.51666 -27.03583 -26.06726 -25.23238 -24.32639 -23.82465 -23.03249 -21.94477 -21.63803 -20.41395 -20.08066 -19.32335 -18.72459 -17.39302 -17.25313 -16.95591 -16.29198 -16.26407 -15.96231 -15.78524 -15.55316 -15.45358 -15.34033 -15.21433 -15.02046 -14.94844 -14.67114 -14.36741 -13.96681 -13.84520 -13.77394 -13.62115 -13.00156 -12.96700 -12.81006 -12.61540 -12.21157 -12.15686 -12.08889 -11.97391 -11.93054 -11.92270 -11.76595 -11.68005 -11.51846 -11.42241 -11.11029 -11.05177 -10.82184 -10.41909 -10.35217 -9.56220 -8.84619 -8.23048 -5.44846 0.13868 1.43289 1.58878 1.66380 1.66607 1.84493 1.94002 2.16862 2.64918 3.17741 3.24673 3.32657 3.41177 3.44524 3.61719 3.73325 3.80492 3.83389 3.89798 4.07572 4.18128 4.20448 4.26559 4.28118 4.30817 4.35669 4.41382 4.50215 4.52558 4.68386 4.70365 4.75107 4.82862 4.83530 4.88067 4.88946 4.98705 5.03775 5.05842 5.08472 5.11322 5.19598 5.23356 5.23965 5.30450 5.34378 5.41056 5.53156 5.89466 5.93703 6.23812 6.42283 6.79787 6.92386 7.09282 7.78092 8.27354 9.01872 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.003731 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.963238 B = 7501.942891 C = 9842.491500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 H 0.086 0.914 4 N -0.719 5.719 5 C 0.598 3.402 6 O -0.561 6.561 7 C -0.110 4.110 8 C 0.056 3.944 9 N -0.521 5.521 10 C 0.240 3.760 11 N -0.435 5.435 12 C 0.079 3.921 13 C -0.131 4.131 14 C -0.121 4.121 15 C -0.036 4.036 16 C -0.098 4.098 17 H 0.063 0.937 18 C -0.098 4.098 19 C -0.127 4.127 20 C 0.157 3.843 21 N -0.614 5.614 22 C -0.358 4.358 23 H 0.051 0.949 24 C -0.068 4.068 25 N -0.941 5.941 26 Si 1.112 2.888 27 H -0.269 1.269 28 H -0.296 1.296 29 H -0.282 1.282 30 C 0.155 3.845 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.401 0.599 35 H 0.187 0.813 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.050 0.950 48 H 0.034 0.966 49 H 0.004 0.996 50 H 0.255 0.745 51 H 0.023 0.977 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.704 2.469 15.510 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.104 0.896 4 N -0.373 5.373 5 C 0.385 3.615 6 O -0.440 6.440 7 C -0.226 4.226 8 C -0.099 4.099 9 N -0.240 5.240 10 C -0.023 4.023 11 N -0.119 5.119 12 C -0.042 4.042 13 C -0.169 4.169 14 C -0.159 4.159 15 C -0.075 4.075 16 C -0.119 4.119 17 H 0.082 0.918 18 C -0.136 4.136 19 C -0.166 4.166 20 C 0.031 3.969 21 N -0.338 5.338 22 C -0.488 4.488 23 H 0.069 0.931 24 C -0.266 4.266 25 N -0.582 5.582 26 Si 0.937 3.063 27 H -0.195 1.195 28 H -0.223 1.223 29 H -0.208 1.208 30 C 0.029 3.971 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.241 0.759 35 H 0.204 0.796 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.022 0.978 50 H 0.065 0.935 51 H 0.041 0.959 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.989 1.993 15.142 16.067 hybrid contribution -0.719 1.036 -0.227 1.281 sum 4.271 3.029 14.915 15.808 Atomic orbital electron populations 1.22218 0.94494 1.02403 1.02633 1.20981 0.94691 0.96683 0.82601 0.89576 1.46437 1.66778 1.14598 1.09520 1.16969 0.76424 0.86044 0.82014 1.90794 1.53059 1.14468 1.85704 1.20958 1.18318 0.85951 0.97352 1.22847 0.99929 0.99718 0.87380 1.70038 1.21191 0.99278 1.33463 1.24361 0.99818 0.98363 0.79750 1.45544 1.48403 1.08157 1.09754 1.22515 1.03730 0.89466 0.88495 1.21963 0.99511 0.96048 0.99351 1.21723 1.02500 0.99227 0.92454 1.20589 1.03668 0.83551 0.99687 1.21746 1.00064 0.96282 0.93816 0.91841 1.21418 1.01121 0.98331 0.92685 1.21859 1.00046 0.96235 0.98457 1.20709 0.95594 0.91813 0.88768 1.44243 1.70922 1.17490 1.01178 1.20109 1.23119 0.93287 1.12265 0.93116 1.27222 0.99858 1.01918 0.97579 1.70905 1.06896 1.34940 1.45466 0.82889 0.73340 0.73704 0.76395 1.19457 1.22273 1.20838 1.21084 0.96047 0.91690 0.88245 0.92335 0.92936 0.89989 0.75925 0.79565 0.88457 0.89319 0.87214 0.89843 0.91180 0.86754 0.87021 0.87123 0.91419 0.90367 0.90675 0.93094 0.94688 0.97753 0.93517 0.95902 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 8.76 71.98 0.63 -3.56 16 2 C 0.15 4.28 2.40 44.99 0.11 4.38 16 3 H 0.09 2.48 7.51 -2.39 -0.02 2.46 16 4 N -0.72 -19.64 4.99 -446.42 -2.23 -21.87 16 5 C 0.60 18.12 7.75 86.47 0.67 18.79 16 6 O -0.56 -19.95 16.54 -4.30 -0.07 -20.02 16 7 C -0.11 -3.08 6.93 40.15 0.28 -2.80 16 8 C 0.06 1.56 11.67 84.12 0.98 2.54 16 9 N -0.52 -13.99 11.20 -186.67 -2.09 -16.08 16 10 C 0.24 5.24 7.64 138.30 1.06 6.30 16 11 N -0.44 -9.92 3.15 -501.16 -1.58 -11.50 16 12 C 0.08 1.44 5.30 86.48 0.46 1.90 16 13 C -0.13 -1.62 5.95 30.74 0.18 -1.43 16 14 C -0.12 -1.15 5.96 30.77 0.18 -0.97 16 15 C -0.04 -0.45 6.33 30.11 0.19 -0.26 16 16 C -0.10 -3.00 2.27 -10.72 -0.02 -3.03 16 17 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.10 -2.83 4.89 30.62 0.15 -2.68 16 19 C -0.13 -4.34 6.06 30.53 0.19 -4.15 16 20 C 0.16 6.98 4.72 86.22 0.41 7.38 16 21 N -0.61 -28.44 2.77 -699.92 -1.94 -30.38 16 22 C -0.36 -18.53 9.43 84.03 0.79 -17.74 16 23 H 0.05 2.56 7.94 -2.91 -0.02 2.54 16 24 C -0.07 -3.67 4.68 84.86 0.40 -3.27 16 25 N -0.94 -55.19 12.75 21.65 0.28 -54.92 16 26 Si 1.11 47.85 29.98 68.60 2.06 49.91 16 27 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 28 H -0.30 -13.25 7.11 99.48 0.71 -12.55 16 29 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 30 C 0.15 5.72 5.26 86.36 0.45 6.18 16 31 H 0.06 1.60 6.24 -2.39 -0.01 1.59 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.96 6.59 -2.38 -0.02 1.94 16 34 H 0.40 10.15 3.28 -92.71 -0.30 9.84 16 35 H 0.19 4.76 8.06 -2.91 -0.02 4.73 16 36 H 0.10 1.73 8.06 -2.39 -0.02 1.71 16 37 H 0.09 1.75 6.55 -2.39 -0.02 1.73 16 38 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 40 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 41 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 43 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.90 6.63 -2.39 -0.02 1.88 16 45 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 46 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 47 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 48 H 0.03 1.78 6.75 -2.39 -0.02 1.76 16 49 H 0.00 0.21 7.83 -2.39 -0.02 0.19 16 50 H 0.25 15.26 6.74 -92.71 -0.62 14.64 16 51 H 0.02 0.88 6.07 -2.39 -0.01 0.86 16 52 H 0.05 1.66 6.74 -2.39 -0.02 1.64 16 Total: -1.00 -70.27 393.18 2.30 -67.97 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.77 Total: 29.29 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 7.10 Total: 7.60 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -7.56 Total: -134.74 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.07 Total: -20.02 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.06 Total: 49.91 kcal Total: -70.27 2.30 -67.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025519436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.760 kcal (2) G-P(sol) polarization free energy of solvation -70.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds