Wall clock time and date at job start Wed Apr 1 2020 05:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47114 * 2 1 4 4 N 1.46501 * 109.46892 * 240.00494 * 2 1 3 5 5 C 1.34774 * 120.00291 * 84.99858 * 4 2 1 6 6 O 1.21513 * 119.99907 * 359.97438 * 5 4 2 7 7 C 1.48166 * 120.00216 * 179.97438 * 5 4 2 8 8 C 1.40024 * 120.87577 * 359.72250 * 7 5 4 9 9 C 1.37954 * 119.17033 * 179.72253 * 8 7 5 10 10 N 1.31917 * 120.99955 * 0.56790 * 9 8 7 11 11 C 1.32320 * 121.94667 * 359.70652 * 10 9 8 12 12 N 1.39024 * 119.64343 * 179.97438 * 11 10 9 13 13 C 1.46502 * 120.00177 * 185.02227 * 12 11 10 14 14 C 1.46501 * 120.00517 * 5.02146 * 12 11 10 15 15 C 1.39124 * 120.71315 * 0.02562 * 11 10 9 16 16 C 1.52995 * 109.46877 * 120.00069 * 2 1 3 17 17 H 1.09001 * 109.49125 * 180.02562 * 16 2 1 18 18 C 1.53032 * 109.52870 * 300.14400 * 16 2 1 19 19 C 1.53036 * 109.54203 * 181.33727 * 18 16 2 20 20 C 1.53630 * 109.24100 * 298.51188 * 19 18 16 21 21 N 1.46929 * 108.54105 * 54.85378 * 20 19 18 22 22 C 1.36936 * 120.62839 * 126.37570 * 21 20 19 23 23 H 1.08001 * 119.99493 * 207.52679 * 22 21 20 24 24 C 1.38811 * 120.00212 * 27.52222 * 22 21 20 25 25 N 1.31616 * 119.99796 * 25.85089 * 24 22 21 26 26 Si 1.86798 * 119.99834 * 205.57383 * 24 22 21 27 27 H 1.48497 * 109.47151 * 90.00469 * 26 24 22 28 28 H 1.48500 * 109.46743 * 210.00191 * 26 24 22 29 29 H 1.48499 * 109.47212 * 329.99989 * 26 24 22 30 30 C 1.46929 * 118.73997 * 306.09298 * 21 20 19 31 31 H 1.09002 * 109.46866 * 59.99523 * 1 2 3 32 32 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46827 * 299.99801 * 1 2 3 34 34 H 0.97002 * 119.99308 * 264.99830 * 4 2 1 35 35 H 1.07997 * 120.41339 * 0.02562 * 8 7 5 36 36 H 1.07994 * 119.49626 * 180.27155 * 9 8 7 37 37 H 1.09003 * 109.46989 * 89.99380 * 13 12 11 38 38 H 1.09002 * 109.47610 * 209.99818 * 13 12 11 39 39 H 1.09006 * 109.47180 * 330.00090 * 13 12 11 40 40 H 1.09000 * 109.46411 * 359.97438 * 14 12 11 41 41 H 1.08995 * 109.47259 * 119.99752 * 14 12 11 42 42 H 1.08997 * 109.47135 * 240.00915 * 14 12 11 43 43 H 1.08001 * 120.53600 * 180.02562 * 15 11 10 44 44 H 1.09007 * 109.46104 * 301.35801 * 18 16 2 45 45 H 1.09003 * 109.46087 * 61.31347 * 18 16 2 46 46 H 1.09004 * 109.50061 * 58.58117 * 19 18 16 47 47 H 1.08995 * 109.50113 * 178.65377 * 19 18 16 48 48 H 1.09003 * 109.73907 * 295.12133 * 20 19 18 49 49 H 1.08993 * 109.66768 * 174.54799 * 20 19 18 50 50 H 0.96996 * 120.00373 * 4.05514 * 25 24 22 51 51 H 1.08992 * 109.58740 * 173.64770 * 30 21 20 52 52 H 1.09001 * 109.59013 * 293.93703 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8576 1.1607 -2.4118 7 6 2.6414 -0.7164 -3.5669 8 6 2.9856 -2.0730 -3.5233 9 6 3.4367 -2.6894 -4.6721 10 7 3.5573 -2.0178 -5.8010 11 6 3.2494 -0.7339 -5.8882 12 7 3.3955 -0.0727 -7.1024 13 6 3.1628 1.3715 -7.1827 14 6 3.7822 -0.8200 -8.3017 15 6 2.7821 -0.0383 -4.7777 16 6 2.0400 -0.7212 1.2492 17 1 3.1300 -0.7211 1.2498 18 6 1.5276 -0.0030 2.4996 19 6 2.0647 -0.7044 3.7492 20 6 1.5498 -2.1516 3.7782 21 7 1.9188 -2.8042 2.5145 22 6 2.6072 -3.9880 2.5157 23 1 3.2475 -4.2410 1.6836 24 6 2.4820 -4.8626 3.5863 25 7 1.3916 -4.8490 4.3232 26 14 3.8581 -6.0641 3.9765 27 1 4.8119 -5.4337 4.9240 28 1 3.2861 -7.2889 4.5914 29 1 4.5699 -6.4251 2.7242 30 6 1.5297 -2.1657 1.2497 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6317 -1.1527 35 1 2.8945 -2.6308 -2.6031 36 1 3.6995 -3.7366 -4.6455 37 1 4.0958 1.9011 -6.9899 38 1 2.7994 1.6262 -8.1783 39 1 2.4201 1.6617 -6.4395 40 1 3.9104 -1.8723 -8.0483 41 1 3.0042 -0.7203 -9.0585 42 1 4.7201 -0.4234 -8.6902 43 1 2.5312 1.0096 -4.8523 44 1 1.8689 1.0322 2.4893 45 1 0.4378 -0.0257 2.5105 46 1 3.1545 -0.7039 3.7266 47 1 1.7190 -0.1782 4.6388 48 1 0.4653 -2.1543 3.8877 49 1 2.0048 -2.6862 4.6119 50 1 0.6514 -4.2697 4.0835 51 1 1.9714 -2.7096 0.4148 52 1 0.4437 -2.1718 1.1562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025549595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:46 Heat of formation + Delta-G solvation = 30.859147 kcal Electronic energy + Delta-G solvation = -30825.511964 eV Core-core repulsion = 26825.721999 eV Total energy + Delta-G solvation = -3999.789965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.84912 -39.65013 -38.14353 -36.73777 -35.43220 -33.41629 -32.76343 -31.13295 -30.45640 -30.39934 -28.61336 -28.14916 -25.69941 -25.18951 -24.84174 -23.40017 -22.49632 -22.14625 -20.67180 -20.14155 -18.85442 -18.23458 -17.37274 -17.01354 -16.21155 -15.97053 -15.74135 -15.60163 -15.04852 -14.71682 -14.53306 -14.39754 -14.32825 -13.95434 -13.75990 -13.63762 -13.59039 -13.33738 -12.89384 -12.85485 -12.58773 -12.49924 -12.35991 -12.22705 -12.04077 -11.90845 -11.64905 -11.06892 -10.85466 -10.60146 -10.44129 -10.35865 -10.27313 -10.18496 -10.09850 -9.94229 -9.93154 -9.84812 -9.59217 -9.29043 -9.02439 -8.37758 -7.85133 -6.89977 -6.11877 -3.25817 0.64281 1.09527 2.57537 2.86764 3.09094 3.48537 3.50036 3.66533 3.77011 4.26382 4.46304 4.55330 4.65636 4.81943 4.86847 4.90450 4.98507 5.02280 5.09928 5.12561 5.26918 5.28664 5.32426 5.33498 5.44716 5.51721 5.53679 5.58013 5.58337 5.65612 5.73948 5.87873 5.94922 6.02198 6.08596 6.10469 6.20529 6.23015 6.34236 6.44651 6.48854 6.53270 6.58815 6.64239 6.68155 6.80324 7.02513 7.07992 7.18325 7.48258 7.85114 7.96414 8.12819 8.54301 9.08094 9.81363 10.26450 11.18227 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002534 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.479315 B =11046.893642 C =12745.212515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.150 3.850 3 H 0.084 0.916 4 N -0.710 5.710 5 C 0.557 3.443 6 O -0.538 6.538 7 C -0.043 4.043 8 C -0.203 4.203 9 C 0.149 3.851 10 N -0.532 5.532 11 C 0.396 3.604 12 N -0.618 5.618 13 C 0.092 3.908 14 C 0.094 3.906 15 C -0.183 4.183 16 C -0.113 4.113 17 H 0.073 0.927 18 C -0.101 4.101 19 C -0.137 4.137 20 C 0.149 3.851 21 N -0.598 5.598 22 C -0.352 4.352 23 H 0.056 0.944 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.067 2.933 27 H -0.293 1.293 28 H -0.290 1.290 29 H -0.292 1.292 30 C 0.154 3.846 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.404 0.596 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.145 0.855 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.017 0.983 49 H 0.078 0.922 50 H 0.269 0.731 51 H 0.048 0.952 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.225 10.626 -19.632 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.102 0.898 4 N -0.361 5.361 5 C 0.343 3.657 6 O -0.415 6.415 7 C -0.054 4.054 8 C -0.226 4.226 9 C -0.008 4.008 10 N -0.250 5.250 11 C 0.162 3.838 12 N -0.333 5.333 13 C -0.051 4.051 14 C -0.049 4.049 15 C -0.209 4.209 16 C -0.134 4.134 17 H 0.092 0.908 18 C -0.139 4.139 19 C -0.176 4.176 20 C 0.024 3.976 21 N -0.321 5.321 22 C -0.481 4.481 23 H 0.073 0.927 24 C -0.226 4.226 25 N -0.554 5.554 26 Si 0.897 3.103 27 H -0.221 1.221 28 H -0.216 1.216 29 H -0.219 1.219 30 C 0.027 3.973 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.241 0.759 35 H 0.156 0.844 36 H 0.181 0.819 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.162 0.838 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.035 0.965 49 H 0.096 0.904 50 H 0.080 0.920 51 H 0.066 0.934 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.837 9.922 -19.495 22.057 hybrid contribution -0.629 1.163 -0.386 1.377 sum 2.208 11.084 -19.881 22.869 Atomic orbital electron populations 1.22266 0.95270 1.02741 1.02064 1.21067 0.94254 0.96810 0.83348 0.89787 1.46133 1.66016 1.14572 1.09427 1.18202 0.77925 0.86428 0.83097 1.90741 1.50324 1.15459 1.85001 1.20117 0.97579 0.93972 0.93726 1.22077 1.05170 0.94462 1.00927 1.22392 0.92545 0.99453 0.86402 1.66984 1.21395 1.07357 1.29229 1.18203 0.90958 0.88607 0.85990 1.46163 1.73923 1.07342 1.05844 1.21742 1.01428 0.78975 1.02957 1.21627 0.98916 0.98557 0.85768 1.21507 1.05767 1.02078 0.91503 1.21945 1.00930 0.98007 0.92500 0.90813 1.21430 1.00315 0.97680 0.94474 1.22134 1.00781 0.98697 0.96018 1.21053 0.96220 0.89986 0.90390 1.44099 1.65917 1.22931 0.99179 1.19966 1.22498 0.96259 1.09390 0.92653 1.25829 1.00958 0.98758 0.97016 1.70758 1.03301 1.37910 1.43461 0.83479 0.75149 0.76015 0.75650 1.22057 1.21613 1.21856 1.20949 0.96330 0.90004 0.89992 0.92730 0.91674 0.91245 0.75903 0.84386 0.81938 0.92808 0.90914 0.90786 0.89035 0.93008 0.93024 0.83774 0.93194 0.92115 0.92394 0.92998 0.96542 0.90371 0.91958 0.93384 0.95897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 8.79 37.16 0.33 -1.93 16 2 C 0.15 2.14 2.41 -67.93 -0.16 1.97 16 3 H 0.08 1.26 7.58 -51.93 -0.39 0.86 16 4 N -0.71 -9.65 4.96 -54.65 -0.27 -9.92 16 5 C 0.56 8.04 7.76 -12.18 -0.09 7.95 16 6 O -0.54 -9.13 16.10 5.35 0.09 -9.04 16 7 C -0.04 -0.55 5.90 -104.68 -0.62 -1.17 16 8 C -0.20 -2.25 9.61 -39.02 -0.37 -2.63 16 9 C 0.15 1.57 11.16 -17.62 -0.20 1.38 16 10 N -0.53 -6.30 8.82 -12.48 -0.11 -6.41 16 11 C 0.40 4.64 7.37 -155.07 -1.14 3.50 16 12 N -0.62 -5.83 3.39 -189.68 -0.64 -6.47 16 13 C 0.09 0.62 10.32 59.85 0.62 1.24 16 14 C 0.09 0.71 10.71 59.85 0.64 1.35 16 15 C -0.18 -2.24 8.84 -38.79 -0.34 -2.58 16 16 C -0.11 -1.82 2.33 -90.50 -0.21 -2.03 16 17 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.10 -1.59 4.77 -26.70 -0.13 -1.72 16 19 C -0.14 -2.49 6.10 -26.39 -0.16 -2.65 16 20 C 0.15 3.37 4.72 -3.48 -0.02 3.35 16 21 N -0.60 -14.18 2.85 -172.05 -0.49 -14.67 16 22 C -0.35 -9.41 9.48 -15.06 -0.14 -9.55 16 23 H 0.06 1.48 7.95 -52.49 -0.42 1.06 16 24 C -0.02 -0.64 4.66 -17.43 -0.08 -0.72 16 25 N -0.91 -26.76 12.46 55.49 0.69 -26.07 16 26 Si 1.07 24.72 29.99 -169.99 -5.10 19.62 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 30 C 0.15 2.95 5.29 -3.71 -0.02 2.93 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.92 6.32 -51.93 -0.33 0.59 16 33 H 0.07 0.89 6.46 -51.93 -0.34 0.55 16 34 H 0.40 5.11 5.10 -40.82 -0.21 4.91 16 35 H 0.14 1.34 6.53 -52.49 -0.34 0.99 16 36 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 39 H 0.07 0.52 5.97 -51.93 -0.31 0.21 16 40 H 0.09 0.79 6.81 -51.93 -0.35 0.43 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.14 1.68 5.71 -52.49 -0.30 1.38 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.93 6.50 -51.93 -0.34 0.60 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 49 H 0.08 2.00 6.31 -51.93 -0.33 1.67 16 50 H 0.27 7.93 6.69 -40.82 -0.27 7.66 16 51 H 0.05 0.89 6.52 -51.93 -0.34 0.55 16 52 H 0.02 0.45 6.19 -51.93 -0.32 0.13 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -32.40 399.89 -9.93 -42.33 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.02 Total: 5.91 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.11 Total: -1.31 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.82 Total: -63.54 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.10 Total: 19.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.40 -9.93 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025549595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.187 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds