Wall clock time and date at job start Wed Apr 1 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47114 * 2 1 4 4 N 1.46501 * 109.46892 * 240.00494 * 2 1 3 5 5 C 1.34774 * 120.00291 * 84.99858 * 4 2 1 6 6 O 1.21513 * 119.99907 * 359.97438 * 5 4 2 7 7 C 1.48166 * 120.00216 * 179.97438 * 5 4 2 8 8 C 1.40024 * 120.87577 * 359.72250 * 7 5 4 9 9 C 1.37954 * 119.17033 * 179.72253 * 8 7 5 10 10 N 1.31917 * 120.99955 * 0.56790 * 9 8 7 11 11 C 1.32320 * 121.94667 * 359.70652 * 10 9 8 12 12 N 1.39024 * 119.64343 * 179.97438 * 11 10 9 13 13 C 1.46502 * 120.00177 * 185.02227 * 12 11 10 14 14 C 1.46501 * 120.00517 * 5.02146 * 12 11 10 15 15 C 1.39124 * 120.71315 * 0.02562 * 11 10 9 16 16 C 1.52995 * 109.46877 * 120.00069 * 2 1 3 17 17 H 1.09001 * 109.49125 * 180.02562 * 16 2 1 18 18 C 1.53032 * 109.52870 * 300.14400 * 16 2 1 19 19 C 1.53036 * 109.54203 * 181.33727 * 18 16 2 20 20 C 1.53630 * 109.24100 * 298.51188 * 19 18 16 21 21 N 1.46929 * 108.54105 * 54.85378 * 20 19 18 22 22 C 1.36936 * 120.62839 * 126.37570 * 21 20 19 23 23 H 1.08001 * 119.99493 * 207.52679 * 22 21 20 24 24 C 1.38811 * 120.00212 * 27.52222 * 22 21 20 25 25 N 1.31616 * 119.99796 * 25.85089 * 24 22 21 26 26 Si 1.86798 * 119.99834 * 205.57383 * 24 22 21 27 27 H 1.48497 * 109.47151 * 90.00469 * 26 24 22 28 28 H 1.48500 * 109.46743 * 210.00191 * 26 24 22 29 29 H 1.48499 * 109.47212 * 329.99989 * 26 24 22 30 30 C 1.46929 * 118.73997 * 306.09298 * 21 20 19 31 31 H 1.09002 * 109.46866 * 59.99523 * 1 2 3 32 32 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46827 * 299.99801 * 1 2 3 34 34 H 0.97002 * 119.99308 * 264.99830 * 4 2 1 35 35 H 1.07997 * 120.41339 * 0.02562 * 8 7 5 36 36 H 1.07994 * 119.49626 * 180.27155 * 9 8 7 37 37 H 1.09003 * 109.46989 * 89.99380 * 13 12 11 38 38 H 1.09002 * 109.47610 * 209.99818 * 13 12 11 39 39 H 1.09006 * 109.47180 * 330.00090 * 13 12 11 40 40 H 1.09000 * 109.46411 * 359.97438 * 14 12 11 41 41 H 1.08995 * 109.47259 * 119.99752 * 14 12 11 42 42 H 1.08997 * 109.47135 * 240.00915 * 14 12 11 43 43 H 1.08001 * 120.53600 * 180.02562 * 15 11 10 44 44 H 1.09007 * 109.46104 * 301.35801 * 18 16 2 45 45 H 1.09003 * 109.46087 * 61.31347 * 18 16 2 46 46 H 1.09004 * 109.50061 * 58.58117 * 19 18 16 47 47 H 1.08995 * 109.50113 * 178.65377 * 19 18 16 48 48 H 1.09003 * 109.73907 * 295.12133 * 20 19 18 49 49 H 1.08993 * 109.66768 * 174.54799 * 20 19 18 50 50 H 0.96996 * 120.00373 * 4.05514 * 25 24 22 51 51 H 1.08992 * 109.58740 * 173.64770 * 30 21 20 52 52 H 1.09001 * 109.59013 * 293.93703 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8576 1.1607 -2.4118 7 6 2.6414 -0.7164 -3.5669 8 6 2.9856 -2.0730 -3.5233 9 6 3.4367 -2.6894 -4.6721 10 7 3.5573 -2.0178 -5.8010 11 6 3.2494 -0.7339 -5.8882 12 7 3.3955 -0.0727 -7.1024 13 6 3.1628 1.3715 -7.1827 14 6 3.7822 -0.8200 -8.3017 15 6 2.7821 -0.0383 -4.7777 16 6 2.0400 -0.7212 1.2492 17 1 3.1300 -0.7211 1.2498 18 6 1.5276 -0.0030 2.4996 19 6 2.0647 -0.7044 3.7492 20 6 1.5498 -2.1516 3.7782 21 7 1.9188 -2.8042 2.5145 22 6 2.6072 -3.9880 2.5157 23 1 3.2475 -4.2410 1.6836 24 6 2.4820 -4.8626 3.5863 25 7 1.3916 -4.8490 4.3232 26 14 3.8581 -6.0641 3.9765 27 1 4.8119 -5.4337 4.9240 28 1 3.2861 -7.2889 4.5914 29 1 4.5699 -6.4251 2.7242 30 6 1.5297 -2.1657 1.2497 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6317 -1.1527 35 1 2.8945 -2.6308 -2.6031 36 1 3.6995 -3.7366 -4.6455 37 1 4.0958 1.9011 -6.9899 38 1 2.7994 1.6262 -8.1783 39 1 2.4201 1.6617 -6.4395 40 1 3.9104 -1.8723 -8.0483 41 1 3.0042 -0.7203 -9.0585 42 1 4.7201 -0.4234 -8.6902 43 1 2.5312 1.0096 -4.8523 44 1 1.8689 1.0322 2.4893 45 1 0.4378 -0.0257 2.5105 46 1 3.1545 -0.7039 3.7266 47 1 1.7190 -0.1782 4.6388 48 1 0.4653 -2.1543 3.8877 49 1 2.0048 -2.6862 4.6119 50 1 0.6514 -4.2697 4.0835 51 1 1.9714 -2.7096 0.4148 52 1 0.4437 -2.1718 1.1562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025549595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:44 Heat of formation + Delta-G solvation = 12.304085 kcal Electronic energy + Delta-G solvation = -30826.316572 eV Core-core repulsion = 26825.721999 eV Total energy + Delta-G solvation = -4000.594573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.80865 -40.75060 -39.55094 -37.47141 -36.92560 -34.91223 -33.85366 -32.36176 -32.21211 -31.33757 -29.58051 -29.15014 -27.05110 -26.48974 -25.91476 -24.62762 -23.90916 -23.20661 -22.10280 -21.23662 -20.26406 -19.41084 -19.10689 -17.93287 -17.15672 -16.96019 -16.66968 -16.42537 -16.24973 -16.20103 -15.92428 -15.58371 -15.43116 -15.26693 -15.10619 -14.96447 -14.82688 -14.42119 -14.34254 -13.90128 -13.68525 -13.56080 -13.40871 -13.10301 -13.01405 -12.92709 -12.74636 -12.66646 -12.61135 -12.11972 -11.89782 -11.88156 -11.73474 -11.62343 -11.46078 -11.25172 -11.17647 -11.06216 -10.82033 -10.50936 -10.40820 -10.18777 -8.86900 -8.59139 -8.22598 -5.35056 -0.30589 0.25210 1.60605 1.67168 1.81099 1.83331 1.84190 2.06799 2.67378 2.87505 3.24131 3.41556 3.49648 3.55572 3.83710 3.88460 3.89200 3.96541 4.02892 4.08089 4.24055 4.31155 4.33992 4.36591 4.45424 4.49809 4.53877 4.57653 4.65339 4.73477 4.74519 4.76266 4.79819 4.85379 4.88613 4.93580 4.99405 5.04577 5.09726 5.10967 5.16712 5.24499 5.29817 5.36611 5.40063 5.47893 5.58089 5.88273 5.93475 6.26100 6.37799 6.42979 7.01233 7.02656 7.09750 7.81710 8.27211 9.04187 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002534 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.479315 B =11046.893642 C =12745.212515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.085 0.915 4 N -0.705 5.705 5 C 0.560 3.440 6 O -0.566 6.566 7 C -0.056 4.056 8 C -0.206 4.206 9 C 0.150 3.850 10 N -0.543 5.543 11 C 0.388 3.612 12 N -0.621 5.621 13 C 0.087 3.913 14 C 0.092 3.908 15 C -0.194 4.194 16 C -0.097 4.097 17 H 0.064 0.936 18 C -0.098 4.098 19 C -0.127 4.127 20 C 0.153 3.847 21 N -0.616 5.616 22 C -0.351 4.351 23 H 0.054 0.946 24 C -0.076 4.076 25 N -0.944 5.944 26 Si 1.113 2.887 27 H -0.287 1.287 28 H -0.297 1.297 29 H -0.270 1.270 30 C 0.153 3.847 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.150 0.850 36 H 0.191 0.809 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.005 0.995 49 H 0.040 0.960 50 H 0.255 0.745 51 H 0.051 0.949 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 11.442 -21.207 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.103 0.897 4 N -0.357 5.357 5 C 0.347 3.653 6 O -0.446 6.446 7 C -0.067 4.067 8 C -0.229 4.229 9 C -0.007 4.007 10 N -0.262 5.262 11 C 0.153 3.847 12 N -0.335 5.335 13 C -0.055 4.055 14 C -0.050 4.050 15 C -0.220 4.220 16 C -0.118 4.118 17 H 0.083 0.917 18 C -0.136 4.136 19 C -0.166 4.166 20 C 0.027 3.973 21 N -0.341 5.341 22 C -0.481 4.481 23 H 0.072 0.928 24 C -0.273 4.273 25 N -0.586 5.586 26 Si 0.939 3.061 27 H -0.214 1.214 28 H -0.224 1.224 29 H -0.195 1.195 30 C 0.027 3.973 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.246 0.754 35 H 0.168 0.832 36 H 0.208 0.792 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.162 0.838 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.023 0.977 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.671 10.771 -21.119 23.990 hybrid contribution -0.900 0.933 0.006 1.297 sum 2.771 11.704 -21.114 24.299 Atomic orbital electron populations 1.22214 0.94558 1.02443 1.02550 1.20932 0.94648 0.96441 0.82641 0.89741 1.46086 1.65716 1.14732 1.09159 1.18426 0.77271 0.86075 0.83543 1.90718 1.51743 1.16691 1.85481 1.20077 0.98669 0.94755 0.93229 1.22210 1.05117 0.93850 1.01735 1.22875 0.91482 1.00577 0.85806 1.67084 1.21824 1.07508 1.29773 1.18415 0.90812 0.88748 0.86731 1.46480 1.73129 1.08341 1.05559 1.21906 1.01696 0.77658 1.04222 1.21729 1.00179 0.97743 0.85360 1.21555 1.06451 1.02224 0.91742 1.21724 1.00190 0.96030 0.93839 0.91736 1.21436 1.00737 0.98735 0.92680 1.21999 1.00185 0.95941 0.98456 1.20932 0.95275 0.92236 0.88846 1.44342 1.66114 1.22619 1.00976 1.20226 1.21889 0.96985 1.08996 0.92812 1.27076 1.02105 1.00656 0.97459 1.70875 1.03965 1.39107 1.44699 0.82855 0.72981 0.73927 0.76354 1.21417 1.22366 1.19536 1.21080 0.96396 0.91643 0.88135 0.92929 0.92292 0.90099 0.75353 0.83230 0.79217 0.92251 0.88562 0.91320 0.90296 0.91385 0.91654 0.83834 0.90333 0.91367 0.93160 0.90821 0.97664 0.94143 0.93535 0.93067 0.95858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 8.79 71.98 0.63 -3.44 16 2 C 0.16 4.24 2.41 44.99 0.11 4.35 16 3 H 0.08 2.35 7.58 -2.39 -0.02 2.33 16 4 N -0.71 -18.37 4.96 -445.11 -2.21 -20.57 16 5 C 0.56 15.76 7.76 86.88 0.67 16.44 16 6 O -0.57 -18.96 16.10 -3.76 -0.06 -19.02 16 7 C -0.06 -1.41 5.90 -19.90 -0.12 -1.52 16 8 C -0.21 -4.33 9.61 22.64 0.22 -4.11 16 9 C 0.15 2.93 11.16 84.61 0.94 3.88 16 10 N -0.54 -12.24 8.82 -193.40 -1.71 -13.94 16 11 C 0.39 8.74 7.37 133.08 0.98 9.73 16 12 N -0.62 -10.86 3.39 -754.02 -2.56 -13.41 16 13 C 0.09 1.05 10.32 127.77 1.32 2.37 16 14 C 0.09 1.22 10.71 127.77 1.37 2.59 16 15 C -0.19 -4.66 8.84 22.79 0.20 -4.46 16 16 C -0.10 -2.97 2.33 -10.72 -0.02 -3.00 16 17 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 18 C -0.10 -2.85 4.77 30.62 0.15 -2.71 16 19 C -0.13 -4.43 6.10 30.82 0.19 -4.25 16 20 C 0.15 6.98 4.72 86.51 0.41 7.38 16 21 N -0.62 -29.34 2.85 -698.24 -1.99 -31.33 16 22 C -0.35 -18.86 9.48 84.03 0.80 -18.06 16 23 H 0.05 2.85 7.95 -2.91 -0.02 2.83 16 24 C -0.08 -4.25 4.66 84.86 0.40 -3.86 16 25 N -0.94 -56.71 12.46 21.65 0.27 -56.44 16 26 Si 1.11 50.08 29.99 68.60 2.06 52.14 16 27 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 29 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 30 C 0.15 5.74 5.29 86.36 0.46 6.19 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.58 6.32 -2.39 -0.02 1.56 16 33 H 0.08 1.88 6.46 -2.39 -0.02 1.86 16 34 H 0.41 9.86 5.10 -92.71 -0.47 9.39 16 35 H 0.15 2.69 6.53 -2.91 -0.02 2.67 16 36 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 39 H 0.07 0.91 5.97 -2.38 -0.01 0.89 16 40 H 0.08 1.26 6.81 -2.39 -0.02 1.25 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.14 3.36 5.71 -2.91 -0.02 3.34 16 44 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.07 1.92 6.50 -2.39 -0.02 1.90 16 46 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.01 0.25 7.87 -2.39 -0.02 0.23 16 49 H 0.04 2.13 6.31 -2.39 -0.02 2.11 16 50 H 0.25 15.56 6.69 -92.71 -0.62 14.94 16 51 H 0.05 1.86 6.52 -2.39 -0.02 1.84 16 52 H 0.02 0.89 6.19 -2.39 -0.01 0.88 16 Total: -1.00 -70.71 399.89 3.12 -67.59 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.61 Total: 27.47 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 8.70 Total: 7.52 kcal Atomic # 7 Polarization: -127.52 SS G_CDS: -8.19 Total: -135.70 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.06 Total: -19.02 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.06 Total: 52.14 kcal Total: -70.71 3.12 -67.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025549595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.893 kcal (2) G-P(sol) polarization free energy of solvation -70.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds