Wall clock time and date at job start Wed Apr 1 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46773 * 2 1 4 4 N 1.46501 * 109.47178 * 120.00123 * 2 1 3 5 5 C 1.34780 * 119.99880 * 275.00308 * 4 2 1 6 6 O 1.21600 * 119.99806 * 359.97438 * 5 4 2 7 7 C 1.47424 * 119.99725 * 180.02562 * 5 4 2 8 8 C 1.41470 * 126.49237 * 359.68057 * 7 5 4 9 9 N 1.30601 * 108.07265 * 179.80986 * 8 7 5 10 10 N 1.39622 * 108.87577 * 0.42504 * 9 8 7 11 11 C 1.34600 * 108.33442 * 359.76046 * 10 9 8 12 12 C 1.50805 * 124.57340 * 179.97438 * 11 10 9 13 13 C 1.53443 * 108.20141 * 344.32878 * 12 11 10 14 14 C 1.53163 * 109.11745 * 48.34538 * 13 12 11 15 15 C 1.46683 * 127.23287 * 179.79929 * 10 9 8 16 16 C 1.53000 * 109.46808 * 239.99940 * 2 1 3 17 17 H 1.09003 * 109.49496 * 184.93334 * 16 2 1 18 18 C 1.53037 * 109.52252 * 64.85666 * 16 2 1 19 19 C 1.53047 * 109.53795 * 178.66489 * 18 16 2 20 20 C 1.52754 * 109.38378 * 61.23712 * 19 18 16 21 21 N 1.46932 * 109.01099 * 305.59147 * 20 19 18 22 22 C 1.36931 * 120.62964 * 233.58902 * 21 20 19 23 23 H 1.08002 * 120.00075 * 152.35895 * 22 21 20 24 24 C 1.38813 * 120.00120 * 332.34384 * 22 21 20 25 25 N 1.31621 * 120.00027 * 342.76454 * 24 22 21 26 26 Si 1.86800 * 120.00058 * 162.47463 * 24 22 21 27 27 H 1.48507 * 109.46810 * 84.99183 * 26 24 22 28 28 H 1.48499 * 109.47476 * 204.98927 * 26 24 22 29 29 H 1.48496 * 109.47213 * 324.99479 * 26 24 22 30 30 C 1.46924 * 118.73758 * 53.30692 * 21 20 19 31 31 H 1.08997 * 109.47143 * 299.99638 * 1 2 3 32 32 H 1.08999 * 109.47187 * 60.00179 * 1 2 3 33 33 H 1.09006 * 109.47190 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99929 * 95.00009 * 4 2 1 35 35 H 1.08007 * 125.95897 * 359.97438 * 8 7 5 36 36 H 1.09002 * 109.71943 * 104.00605 * 12 11 10 37 37 H 1.09006 * 109.71991 * 224.60582 * 12 11 10 38 38 H 1.08997 * 109.53670 * 168.23835 * 13 12 11 39 39 H 1.09010 * 109.52952 * 288.38407 * 13 12 11 40 40 H 1.08992 * 109.46136 * 50.78878 * 14 13 12 41 41 H 1.09007 * 109.45722 * 170.74374 * 14 13 12 42 42 H 1.09000 * 109.57792 * 42.74667 * 15 10 9 43 43 H 1.09001 * 109.67714 * 282.42617 * 15 10 9 44 44 H 1.09002 * 109.46301 * 298.67870 * 18 16 2 45 45 H 1.09001 * 109.46592 * 58.64626 * 18 16 2 46 46 H 1.08995 * 109.49608 * 181.31623 * 19 18 16 47 47 H 1.09006 * 109.49576 * 301.37707 * 19 18 16 48 48 H 1.08997 * 109.51067 * 185.71031 * 20 19 18 49 49 H 1.08997 * 109.43181 * 65.42668 * 20 19 18 50 50 H 0.96998 * 119.99813 * 179.72089 * 25 24 22 51 51 H 1.09004 * 109.58803 * 66.43223 * 30 21 20 52 52 H 1.08993 * 109.58971 * 186.86030 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8582 1.1617 2.4116 7 6 2.6390 -0.7132 3.5607 8 6 3.0076 -2.0758 3.6539 9 7 3.3931 -2.3084 4.8798 10 7 3.2824 -1.1293 5.6194 11 6 2.8207 -0.1612 4.8063 12 6 2.5641 1.2629 5.2310 13 6 2.5331 1.3075 6.7645 14 6 3.7536 0.5623 7.3128 15 6 3.6042 -0.9378 7.0377 16 6 2.0400 -0.7213 -1.2493 17 1 3.1264 -0.7987 -1.2066 18 6 1.6326 0.0663 -2.4966 19 6 2.1710 -0.6372 -3.7446 20 6 1.5671 -2.0372 -3.8377 21 7 1.8254 -2.7544 -2.5815 22 6 2.4290 -3.9835 -2.5912 23 1 3.0087 -4.3072 -1.7395 24 6 2.2954 -4.8136 -3.6957 25 7 1.3406 -4.5917 -4.5741 26 14 3.4757 -6.2407 -3.9397 27 1 2.9933 -7.4184 -3.1743 28 1 3.5464 -6.5836 -5.3829 29 1 4.8255 -5.8550 -3.4559 30 6 1.4295 -2.1248 -1.3144 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2491 -1.6318 1.1526 35 1 2.9780 -2.7972 2.8506 36 1 3.3619 1.9066 4.8605 37 1 1.6063 1.5985 4.8332 38 1 2.5585 2.3444 7.0995 39 1 1.6214 0.8305 7.1245 40 1 4.6549 0.9332 6.8251 41 1 3.8279 0.7285 8.3876 42 1 4.5394 -1.4463 7.2719 43 1 2.8028 -1.3450 7.6541 44 1 0.5454 0.1221 -2.5519 45 1 2.0454 1.0736 -2.4411 46 1 1.9005 -0.0634 -4.6309 47 1 3.2563 -0.7149 -3.6787 48 1 2.0246 -2.5766 -4.6670 49 1 0.4921 -1.9585 -3.9990 50 1 1.2498 -5.1693 -5.3480 51 1 0.3429 -2.0533 -1.2657 52 1 1.7962 -2.7218 -0.4795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025585033.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:38 Heat of formation + Delta-G solvation = 21.778201 kcal Electronic energy + Delta-G solvation = -31180.941303 eV Core-core repulsion = 27180.757558 eV Total energy + Delta-G solvation = -4000.183744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.71194 -40.72944 -39.28044 -37.49474 -36.58454 -34.62500 -33.55292 -32.47018 -32.22503 -31.42285 -29.78738 -29.05879 -27.19113 -25.50419 -25.23316 -24.02925 -23.64214 -23.04807 -21.98416 -21.00750 -20.22971 -19.71242 -18.80167 -18.41601 -16.98814 -16.87116 -16.84058 -16.41928 -16.01261 -15.69657 -15.61871 -15.52070 -15.32721 -15.07412 -14.97993 -14.83942 -14.66326 -14.53609 -14.02811 -13.91822 -13.60920 -13.47845 -13.26929 -13.00391 -12.92349 -12.73509 -12.65668 -12.42968 -12.27513 -12.00483 -11.97823 -11.94131 -11.92812 -11.64747 -11.60827 -11.46210 -11.21610 -11.04058 -10.77222 -10.48114 -10.37472 -10.06169 -9.59132 -8.61930 -7.83567 -5.27490 0.51039 1.11981 1.35837 1.47547 1.49624 1.58178 2.36063 2.48327 2.53578 3.31052 3.37217 3.48036 3.63465 3.73906 3.77397 3.90384 3.98798 4.04356 4.09554 4.10611 4.27750 4.34517 4.39902 4.41371 4.48789 4.52154 4.63761 4.66883 4.72511 4.74439 4.81685 4.90102 4.95011 4.95655 5.02620 5.04227 5.08641 5.12429 5.18883 5.25226 5.26606 5.34181 5.38171 5.39387 5.53016 5.59788 5.65497 5.72478 5.83131 5.88869 6.42565 6.50119 6.69296 7.18926 7.34859 7.91411 8.42635 9.22473 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.002589 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.054266 B =10813.800356 C =12366.176934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.163 3.837 3 H 0.081 0.919 4 N -0.714 5.714 5 C 0.597 3.403 6 O -0.580 6.580 7 C -0.319 4.319 8 C 0.080 3.920 9 N -0.322 5.322 10 N -0.359 5.359 11 C 0.156 3.844 12 C -0.059 4.059 13 C -0.124 4.124 14 C -0.131 4.131 15 C 0.116 3.884 16 C -0.097 4.097 17 H 0.064 0.936 18 C -0.097 4.097 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.258 4.258 23 H 0.068 0.932 24 C -0.052 4.052 25 N -0.934 5.934 26 Si 0.962 3.038 27 H -0.284 1.284 28 H -0.295 1.295 29 H -0.273 1.273 30 C 0.151 3.849 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.405 0.595 35 H 0.204 0.796 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.047 0.953 48 H 0.050 0.950 49 H -0.004 1.004 50 H 0.248 0.752 51 H 0.023 0.977 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 13.757 23.784 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.099 0.901 4 N -0.364 5.364 5 C 0.386 3.614 6 O -0.462 6.462 7 C -0.334 4.334 8 C -0.107 4.107 9 N -0.141 5.141 10 N -0.139 5.139 11 C 0.022 3.978 12 C -0.098 4.098 13 C -0.162 4.162 14 C -0.169 4.169 15 C -0.002 4.002 16 C -0.118 4.118 17 H 0.082 0.918 18 C -0.135 4.135 19 C -0.170 4.170 20 C 0.048 3.952 21 N -0.332 5.332 22 C -0.388 4.388 23 H 0.086 0.914 24 C -0.247 4.247 25 N -0.581 5.581 26 Si 0.791 3.209 27 H -0.210 1.210 28 H -0.222 1.222 29 H -0.198 1.198 30 C 0.026 3.974 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.241 0.759 35 H 0.221 0.779 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.145 0.855 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.014 0.986 50 H 0.057 0.943 51 H 0.041 0.959 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.592 13.560 24.672 28.382 hybrid contribution 0.160 -1.282 -1.476 1.961 sum 3.752 12.279 23.196 26.513 Atomic orbital electron populations 1.22198 0.95030 1.02243 1.02134 1.20817 0.94271 0.96289 0.82811 0.90059 1.45894 1.66991 1.14392 1.09167 1.17328 0.76158 0.85513 0.82382 1.90687 1.53370 1.16545 1.85578 1.19941 1.22559 0.95651 0.95213 1.24434 0.95684 0.95343 0.95281 1.77062 1.25672 1.06055 1.05294 1.48958 1.48465 1.05727 1.10748 1.21799 0.92810 0.93688 0.89459 1.20648 1.04334 0.87144 0.97656 1.21765 0.98686 1.03414 0.92293 1.22024 0.99164 0.90806 1.04879 1.22366 1.03882 0.99815 0.74178 1.21727 1.00103 0.96163 0.93773 0.91751 1.21412 1.00874 0.98166 0.93050 1.21944 0.99881 0.97024 0.98191 1.20525 0.95289 0.90251 0.89124 1.44273 1.70054 1.17277 1.01601 1.19497 1.23249 0.92999 1.03095 0.91407 1.25736 0.99011 1.00338 0.99628 1.70192 1.32319 1.40994 1.14583 0.85375 0.79508 0.79664 0.76387 1.21022 1.22176 1.19772 1.21119 0.96204 0.91979 0.88133 0.93026 0.90679 0.92404 0.75949 0.77894 0.88623 0.88990 0.87735 0.90962 0.90732 0.85533 0.87730 0.88132 0.91756 0.90722 0.91247 0.93396 0.93156 0.98636 0.94277 0.95882 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 8.76 71.98 0.63 -3.68 16 2 C 0.16 4.60 2.36 44.99 0.11 4.70 16 3 H 0.08 2.38 7.58 -2.39 -0.02 2.36 16 4 N -0.71 -19.51 5.01 -445.80 -2.23 -21.74 16 5 C 0.60 17.37 7.78 86.66 0.67 18.05 16 6 O -0.58 -19.25 15.09 -4.03 -0.06 -19.31 16 7 C -0.32 -8.39 6.12 -20.25 -0.12 -8.51 16 8 C 0.08 1.98 11.51 85.67 0.99 2.97 16 9 N -0.32 -8.22 12.54 -56.07 -0.70 -8.93 16 10 N -0.36 -7.44 4.01 -332.34 -1.33 -8.77 16 11 C 0.16 3.52 6.66 41.98 0.28 3.80 16 12 C -0.06 -1.00 5.37 30.03 0.16 -0.84 16 13 C -0.12 -1.08 5.98 30.80 0.18 -0.89 16 14 C -0.13 -0.82 5.93 30.73 0.18 -0.63 16 15 C 0.12 1.29 7.27 86.42 0.63 1.92 16 16 C -0.10 -3.10 2.27 -10.72 -0.02 -3.13 16 17 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 18 C -0.10 -3.01 4.89 30.62 0.15 -2.86 16 19 C -0.13 -4.85 6.06 30.53 0.19 -4.66 16 20 C 0.17 8.34 5.28 86.22 0.46 8.79 16 21 N -0.61 -29.90 3.00 -699.94 -2.10 -32.00 16 22 C -0.26 -13.98 9.59 84.03 0.81 -13.17 16 23 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 24 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 25 N -0.93 -55.37 11.18 21.65 0.24 -55.13 16 26 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 30 C 0.15 5.89 5.26 86.36 0.45 6.34 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.91 6.59 -2.39 -0.02 1.89 16 33 H 0.06 1.66 6.23 -2.38 -0.01 1.64 16 34 H 0.40 10.30 6.23 -92.71 -0.58 9.72 16 35 H 0.20 4.14 7.51 -2.91 -0.02 4.12 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.83 7.47 -2.38 -0.02 1.82 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.64 8.13 -2.38 -0.02 0.62 16 40 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 41 H 0.13 0.04 8.14 -2.38 -0.02 0.02 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 1.96 6.63 -2.39 -0.02 1.94 16 45 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.05 1.81 8.14 -2.38 -0.02 1.80 16 48 H 0.05 2.76 6.03 -2.39 -0.01 2.74 16 49 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 50 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 51 H 0.02 0.93 6.06 -2.39 -0.01 0.92 16 52 H 0.05 1.95 6.74 -2.39 -0.02 1.94 16 Total: -1.00 -72.08 396.81 2.34 -69.74 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.35 Total: 23.51 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 6.15 Total: 5.72 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -6.13 Total: -126.57 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.06 Total: -19.31 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -72.08 2.34 -69.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025585033.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.516 kcal (2) G-P(sol) polarization free energy of solvation -72.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds