Wall clock time and date at job start Wed Apr 1 2020 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46804 * 2 1 4 4 N 1.46501 * 109.46718 * 240.00651 * 2 1 3 5 5 C 1.34773 * 120.00256 * 85.00459 * 4 2 1 6 6 O 1.21609 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.47428 * 120.00082 * 179.97438 * 5 4 2 8 8 C 1.41284 * 126.41812 * 359.68518 * 7 5 4 9 9 N 1.30448 * 108.02806 * 179.87784 * 8 7 5 10 10 N 1.39935 * 108.89099 * 0.38267 * 9 8 7 11 11 C 1.46500 * 125.74899 * 179.77121 * 10 9 8 12 12 C 1.52996 * 109.47509 * 304.97693 * 11 10 9 13 13 C 1.52995 * 117.50127 * 243.74966 * 12 11 10 14 14 C 1.52995 * 117.50037 * 175.08772 * 12 11 10 15 15 C 1.34254 * 108.49353 * 359.75271 * 10 9 8 16 16 C 1.52993 * 109.47334 * 120.00657 * 2 1 3 17 17 H 1.08999 * 109.50168 * 59.93134 * 16 2 1 18 18 C 1.53051 * 109.52109 * 299.85274 * 16 2 1 19 19 C 1.53040 * 109.53536 * 178.66961 * 18 16 2 20 20 C 1.52759 * 109.38545 * 61.23641 * 19 18 16 21 21 N 1.46923 * 109.01237 * 305.59084 * 20 19 18 22 22 C 1.36935 * 120.62889 * 233.58434 * 21 20 19 23 23 H 1.07998 * 119.99964 * 152.10883 * 22 21 20 24 24 C 1.38806 * 119.99901 * 332.09815 * 22 21 20 25 25 N 1.31623 * 120.00510 * 335.27507 * 24 22 21 26 26 Si 1.86803 * 120.00033 * 154.99824 * 24 22 21 27 27 H 1.48499 * 109.47244 * 89.99976 * 26 24 22 28 28 H 1.48497 * 109.47129 * 210.00254 * 26 24 22 29 29 H 1.48505 * 109.46806 * 330.00107 * 26 24 22 30 30 C 1.46923 * 118.73676 * 53.30433 * 21 20 19 31 31 H 1.08992 * 109.46989 * 299.99339 * 1 2 3 32 32 H 1.09001 * 109.46941 * 59.99785 * 1 2 3 33 33 H 1.08999 * 109.46657 * 179.97438 * 1 2 3 34 34 H 0.96998 * 119.99895 * 264.99633 * 4 2 1 35 35 H 1.08005 * 125.98535 * 359.97438 * 8 7 5 36 36 H 1.09005 * 109.47281 * 64.97635 * 11 10 9 37 37 H 1.08996 * 109.47340 * 184.97171 * 11 10 9 38 38 H 1.09004 * 115.55243 * 29.41676 * 12 11 10 39 39 H 1.09008 * 117.49841 * 359.97438 * 13 12 11 40 40 H 1.08995 * 117.50552 * 145.01628 * 13 12 11 41 41 H 1.09004 * 117.49910 * 214.97508 * 14 12 11 42 42 H 1.08995 * 117.50225 * 359.97438 * 14 12 11 43 43 H 1.08005 * 126.28985 * 179.97438 * 15 10 9 44 44 H 1.08990 * 109.45897 * 298.68739 * 18 16 2 45 45 H 1.09000 * 109.45851 * 58.64847 * 18 16 2 46 46 H 1.08998 * 109.49326 * 181.31985 * 19 18 16 47 47 H 1.09008 * 109.49676 * 301.38061 * 19 18 16 48 48 H 1.09000 * 109.50763 * 185.70096 * 20 19 18 49 49 H 1.09006 * 109.42391 * 65.42647 * 20 19 18 50 50 H 0.97000 * 119.99468 * 353.97254 * 25 24 22 51 51 H 1.09006 * 109.58528 * 66.43357 * 30 21 20 52 52 H 1.09002 * 109.58420 * 186.71427 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8575 1.1618 -2.4118 7 6 2.6389 -0.7128 -3.5609 8 6 3.0182 -2.0709 -3.6493 9 7 3.3927 -2.3064 -4.8765 10 7 3.2810 -1.1254 -5.6188 11 6 3.6105 -0.9722 -7.0380 12 6 5.0501 -1.4301 -7.2798 13 6 6.0540 -0.3805 -7.7607 14 6 5.5497 -1.4564 -8.7257 15 6 2.8208 -0.1568 -4.8112 16 6 2.0401 -0.7213 1.2491 17 1 1.6760 -1.7487 1.2501 18 6 1.5336 0.0012 2.4996 19 6 2.0160 -0.7391 3.7491 20 6 3.5433 -0.7434 3.7779 21 7 4.0443 -1.3013 2.5144 22 6 4.9301 -2.3456 2.5155 23 1 4.9568 -3.0320 1.6821 24 6 5.7939 -2.5218 3.5877 25 7 6.1263 -1.4948 4.3408 26 14 6.4786 -4.2180 3.9665 27 1 7.7523 -4.4139 3.2286 28 1 6.7285 -4.3364 5.4255 29 1 5.4991 -5.2522 3.5466 30 6 3.5720 -0.7216 1.2497 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 2.2490 -1.6316 -1.1528 35 1 2.9997 -2.7888 -2.8426 36 1 2.9308 -1.5790 -7.6364 37 1 3.5094 0.0749 -7.3235 38 1 5.4163 -2.2054 -6.6067 39 1 5.6887 0.6364 -7.9053 40 1 7.0805 -0.4653 -7.4044 41 1 6.2448 -2.2486 -9.0037 42 1 4.8526 -1.1478 -9.5047 43 1 2.6286 0.8692 -5.0886 44 1 1.9182 1.0209 2.5105 45 1 0.4439 0.0244 2.4893 46 1 1.6355 -0.2374 4.6388 47 1 1.6517 -1.7663 3.7268 48 1 3.8900 -1.3554 4.6106 49 1 3.9066 0.2776 3.8960 50 1 5.8391 -0.6011 4.0964 51 1 3.9376 0.3011 1.1574 52 1 3.9397 -1.3179 0.4146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025589136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:30 Heat of formation + Delta-G solvation = 73.403132 kcal Electronic energy + Delta-G solvation = -30471.296504 eV Core-core repulsion = 26473.351385 eV Total energy + Delta-G solvation = -3997.945119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.55200 -39.50006 -38.05787 -37.76773 -35.30085 -33.44350 -32.96218 -31.13793 -30.45911 -30.21553 -28.42911 -27.49228 -25.12527 -23.83817 -22.90202 -22.55055 -22.12133 -21.89987 -20.73149 -20.33473 -19.96688 -19.07419 -18.07713 -17.32394 -16.43452 -15.94635 -15.83848 -15.38471 -14.86524 -14.66963 -14.47942 -14.27955 -14.04562 -13.73013 -13.65240 -13.58218 -13.38861 -13.28056 -12.93793 -12.79189 -12.49730 -12.26205 -12.18524 -12.03212 -11.83708 -11.53681 -11.19382 -11.05659 -10.96678 -10.87931 -10.63829 -10.59845 -10.29057 -10.17949 -10.03280 -9.92635 -9.82024 -9.77442 -9.60406 -9.23863 -8.97586 -8.68865 -8.32789 -6.83896 -6.03359 -3.19528 1.40192 2.03316 2.09552 3.24804 3.41194 3.51093 3.55097 3.55976 3.70172 3.89512 4.28445 4.39676 4.48517 4.56419 4.60047 4.67869 4.88153 4.92740 4.95781 5.08545 5.14382 5.27108 5.29895 5.36497 5.38918 5.40047 5.50553 5.56845 5.59791 5.60664 5.70729 5.75957 5.77521 6.00644 6.04753 6.11850 6.23451 6.26119 6.28756 6.40376 6.52697 6.54489 6.59329 6.66265 6.76323 6.80110 6.90293 7.15308 7.25597 7.35114 7.74195 8.02543 8.44276 8.61197 9.15853 9.88429 10.33884 11.24937 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010042 B = 0.002607 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.646643 B =10737.197635 C =12859.925427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.085 0.915 4 N -0.715 5.715 5 C 0.596 3.404 6 O -0.557 6.557 7 C -0.289 4.289 8 C 0.084 3.916 9 N -0.294 5.294 10 N -0.360 5.360 11 C 0.163 3.837 12 C -0.172 4.172 13 C -0.177 4.177 14 C -0.169 4.169 15 C 0.126 3.874 16 C -0.111 4.111 17 H 0.072 0.928 18 C -0.101 4.101 19 C -0.136 4.136 20 C 0.149 3.851 21 N -0.599 5.599 22 C -0.347 4.347 23 H 0.055 0.945 24 C -0.025 4.025 25 N -0.917 5.917 26 Si 1.065 2.935 27 H -0.295 1.295 28 H -0.286 1.286 29 H -0.293 1.293 30 C 0.158 3.842 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.399 0.601 35 H 0.191 0.809 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.186 0.814 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.015 0.985 50 H 0.269 0.731 51 H 0.014 0.986 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.735 1.928 -22.051 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 H 0.103 0.897 4 N -0.365 5.365 5 C 0.384 3.616 6 O -0.436 6.436 7 C -0.304 4.304 8 C -0.104 4.104 9 N -0.114 5.114 10 N -0.138 5.138 11 C 0.042 3.958 12 C -0.191 4.191 13 C -0.214 4.214 14 C -0.206 4.206 15 C -0.025 4.025 16 C -0.131 4.131 17 H 0.090 0.910 18 C -0.139 4.139 19 C -0.175 4.175 20 C 0.023 3.977 21 N -0.322 5.322 22 C -0.476 4.476 23 H 0.073 0.927 24 C -0.227 4.227 25 N -0.557 5.557 26 Si 0.894 3.106 27 H -0.222 1.222 28 H -0.212 1.212 29 H -0.219 1.219 30 C 0.032 3.968 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.234 0.766 35 H 0.207 0.793 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.203 0.797 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.033 0.967 50 H 0.080 0.920 51 H 0.032 0.968 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.511 1.005 -21.975 23.245 hybrid contribution -1.046 0.996 -0.559 1.548 sum -8.557 2.001 -22.533 24.186 Atomic orbital electron populations 1.22201 0.95755 1.01854 1.02100 1.20999 0.93416 0.97459 0.83539 0.89661 1.45846 1.67184 1.14056 1.09387 1.17193 0.76631 0.85755 0.82064 1.90744 1.51987 1.15613 1.85299 1.20304 1.19613 0.95228 0.95268 1.24130 0.95949 0.95388 0.94945 1.77156 1.24470 1.04989 1.04745 1.48473 1.48820 1.06963 1.09586 1.21374 0.95505 1.02720 0.76155 1.22564 0.93819 1.03539 0.99156 1.23138 0.99720 0.95060 1.03495 1.22988 1.03639 1.02065 0.91954 1.22940 0.94528 0.95275 0.89795 1.21952 0.99339 0.99289 0.92569 0.90968 1.21442 0.99009 0.98943 0.94547 1.21985 0.99707 0.99767 0.96087 1.20871 0.89748 0.96613 0.90506 1.44098 1.50118 1.38703 0.99289 1.19946 1.14527 1.03944 1.09213 0.92747 1.25814 0.95205 1.04715 0.96972 1.70743 1.42803 0.99647 1.42532 0.83553 0.75562 0.75077 0.76367 1.22235 1.21223 1.21916 1.20848 0.89990 0.96137 0.89869 0.91428 0.92587 0.92696 0.76641 0.79273 0.88887 0.88213 0.86200 0.88448 0.88359 0.88209 0.88401 0.79702 0.92598 0.92819 0.93033 0.92440 0.90384 0.96747 0.91972 0.96779 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.14 37.16 0.34 -1.71 16 2 C 0.15 2.20 2.16 -67.93 -0.15 2.05 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 4 N -0.71 -9.81 4.47 -54.88 -0.25 -10.05 16 5 C 0.60 8.80 7.78 -12.52 -0.10 8.71 16 6 O -0.56 -9.85 16.56 5.27 0.09 -9.77 16 7 C -0.29 -3.66 6.13 -105.07 -0.64 -4.30 16 8 C 0.08 0.98 11.50 -16.98 -0.20 0.79 16 9 N -0.29 -3.57 12.14 30.86 0.37 -3.19 16 10 N -0.36 -3.61 3.65 -60.81 -0.22 -3.83 16 11 C 0.16 1.07 6.77 -4.04 -0.03 1.04 16 12 C -0.17 -1.21 5.92 -90.63 -0.54 -1.75 16 13 C -0.18 -1.07 10.18 -26.70 -0.27 -1.34 16 14 C -0.17 -0.88 10.25 -26.70 -0.27 -1.15 16 15 C 0.13 1.35 11.25 -16.56 -0.19 1.16 16 16 C -0.11 -1.82 1.97 -90.50 -0.18 -2.00 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.10 -1.64 4.86 -26.68 -0.13 -1.77 16 19 C -0.14 -2.53 6.06 -26.83 -0.16 -2.69 16 20 C 0.15 3.47 4.66 -3.93 -0.02 3.45 16 21 N -0.60 -14.82 2.86 -172.59 -0.49 -15.31 16 22 C -0.35 -9.59 9.49 -15.06 -0.14 -9.73 16 23 H 0.05 1.50 7.94 -52.49 -0.42 1.08 16 24 C -0.03 -0.71 4.69 -17.43 -0.08 -0.79 16 25 N -0.92 -27.57 12.40 55.49 0.69 -26.88 16 26 Si 1.06 25.22 29.99 -169.99 -5.10 20.13 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 30 C 0.16 3.27 5.56 -3.71 -0.02 3.25 16 31 H 0.07 0.80 6.41 -51.93 -0.33 0.47 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 4.85 7.37 -40.82 -0.30 4.55 16 35 H 0.19 1.78 7.50 -52.48 -0.39 1.39 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.41 7.79 -51.93 -0.40 0.00 16 38 H 0.12 1.13 7.90 -51.93 -0.41 0.71 16 39 H 0.10 0.49 8.03 -51.92 -0.42 0.07 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.19 1.56 8.06 -52.48 -0.42 1.13 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.74 6.37 -51.93 -0.33 0.41 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 48 H 0.08 2.05 6.30 -51.93 -0.33 1.72 16 49 H 0.01 0.35 7.87 -51.93 -0.41 -0.06 16 50 H 0.27 8.19 6.71 -40.82 -0.27 7.92 16 51 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.05 1.09 7.44 -51.93 -0.39 0.71 16 LS Contribution 414.59 15.07 6.25 6.25 Total: -1.00 -34.15 414.59 -10.10 -44.24 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.67 Total: 5.22 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.77 Total: -6.80 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.10 Total: -59.27 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.10 Total: 20.13 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.15 -10.10 -44.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.647 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds