Wall clock time and date at job start Wed Apr 1 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46804 * 2 1 4 4 N 1.46501 * 109.46718 * 240.00651 * 2 1 3 5 5 C 1.34773 * 120.00256 * 85.00459 * 4 2 1 6 6 O 1.21609 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.47428 * 120.00082 * 179.97438 * 5 4 2 8 8 C 1.41284 * 126.41812 * 359.68518 * 7 5 4 9 9 N 1.30448 * 108.02806 * 179.87784 * 8 7 5 10 10 N 1.39935 * 108.89099 * 0.38267 * 9 8 7 11 11 C 1.46500 * 125.74899 * 179.77121 * 10 9 8 12 12 C 1.52996 * 109.47509 * 304.97693 * 11 10 9 13 13 C 1.52995 * 117.50127 * 243.74966 * 12 11 10 14 14 C 1.52995 * 117.50037 * 175.08772 * 12 11 10 15 15 C 1.34254 * 108.49353 * 359.75271 * 10 9 8 16 16 C 1.52993 * 109.47334 * 120.00657 * 2 1 3 17 17 H 1.08999 * 109.50168 * 59.93134 * 16 2 1 18 18 C 1.53051 * 109.52109 * 299.85274 * 16 2 1 19 19 C 1.53040 * 109.53536 * 178.66961 * 18 16 2 20 20 C 1.52759 * 109.38545 * 61.23641 * 19 18 16 21 21 N 1.46923 * 109.01237 * 305.59084 * 20 19 18 22 22 C 1.36935 * 120.62889 * 233.58434 * 21 20 19 23 23 H 1.07998 * 119.99964 * 152.10883 * 22 21 20 24 24 C 1.38806 * 119.99901 * 332.09815 * 22 21 20 25 25 N 1.31623 * 120.00510 * 335.27507 * 24 22 21 26 26 Si 1.86803 * 120.00033 * 154.99824 * 24 22 21 27 27 H 1.48499 * 109.47244 * 89.99976 * 26 24 22 28 28 H 1.48497 * 109.47129 * 210.00254 * 26 24 22 29 29 H 1.48505 * 109.46806 * 330.00107 * 26 24 22 30 30 C 1.46923 * 118.73676 * 53.30433 * 21 20 19 31 31 H 1.08992 * 109.46989 * 299.99339 * 1 2 3 32 32 H 1.09001 * 109.46941 * 59.99785 * 1 2 3 33 33 H 1.08999 * 109.46657 * 179.97438 * 1 2 3 34 34 H 0.96998 * 119.99895 * 264.99633 * 4 2 1 35 35 H 1.08005 * 125.98535 * 359.97438 * 8 7 5 36 36 H 1.09005 * 109.47281 * 64.97635 * 11 10 9 37 37 H 1.08996 * 109.47340 * 184.97171 * 11 10 9 38 38 H 1.09004 * 115.55243 * 29.41676 * 12 11 10 39 39 H 1.09008 * 117.49841 * 359.97438 * 13 12 11 40 40 H 1.08995 * 117.50552 * 145.01628 * 13 12 11 41 41 H 1.09004 * 117.49910 * 214.97508 * 14 12 11 42 42 H 1.08995 * 117.50225 * 359.97438 * 14 12 11 43 43 H 1.08005 * 126.28985 * 179.97438 * 15 10 9 44 44 H 1.08990 * 109.45897 * 298.68739 * 18 16 2 45 45 H 1.09000 * 109.45851 * 58.64847 * 18 16 2 46 46 H 1.08998 * 109.49326 * 181.31985 * 19 18 16 47 47 H 1.09008 * 109.49676 * 301.38061 * 19 18 16 48 48 H 1.09000 * 109.50763 * 185.70096 * 20 19 18 49 49 H 1.09006 * 109.42391 * 65.42647 * 20 19 18 50 50 H 0.97000 * 119.99468 * 353.97254 * 25 24 22 51 51 H 1.09006 * 109.58528 * 66.43357 * 30 21 20 52 52 H 1.09002 * 109.58420 * 186.71427 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1471 -0.0181 -2.3572 6 8 1.8575 1.1618 -2.4118 7 6 2.6389 -0.7128 -3.5609 8 6 3.0182 -2.0709 -3.6493 9 7 3.3927 -2.3064 -4.8765 10 7 3.2810 -1.1254 -5.6188 11 6 3.6105 -0.9722 -7.0380 12 6 5.0501 -1.4301 -7.2798 13 6 6.0540 -0.3805 -7.7607 14 6 5.5497 -1.4564 -8.7257 15 6 2.8208 -0.1568 -4.8112 16 6 2.0401 -0.7213 1.2491 17 1 1.6760 -1.7487 1.2501 18 6 1.5336 0.0012 2.4996 19 6 2.0160 -0.7391 3.7491 20 6 3.5433 -0.7434 3.7779 21 7 4.0443 -1.3013 2.5144 22 6 4.9301 -2.3456 2.5155 23 1 4.9568 -3.0320 1.6821 24 6 5.7939 -2.5218 3.5877 25 7 6.1263 -1.4948 4.3408 26 14 6.4786 -4.2180 3.9665 27 1 7.7523 -4.4139 3.2286 28 1 6.7285 -4.3364 5.4255 29 1 5.4991 -5.2522 3.5466 30 6 3.5720 -0.7216 1.2497 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 2.2490 -1.6316 -1.1528 35 1 2.9997 -2.7888 -2.8426 36 1 2.9308 -1.5790 -7.6364 37 1 3.5094 0.0749 -7.3235 38 1 5.4163 -2.2054 -6.6067 39 1 5.6887 0.6364 -7.9053 40 1 7.0805 -0.4653 -7.4044 41 1 6.2448 -2.2486 -9.0037 42 1 4.8526 -1.1478 -9.5047 43 1 2.6286 0.8692 -5.0886 44 1 1.9182 1.0209 2.5105 45 1 0.4439 0.0244 2.4893 46 1 1.6355 -0.2374 4.6388 47 1 1.6517 -1.7663 3.7268 48 1 3.8900 -1.3554 4.6106 49 1 3.9066 0.2776 3.8960 50 1 5.8391 -0.6011 4.0964 51 1 3.9376 0.3011 1.1574 52 1 3.9397 -1.3179 0.4146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025589136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:28 Heat of formation + Delta-G solvation = 53.247923 kcal Electronic energy + Delta-G solvation = -30472.170499 eV Core-core repulsion = 26473.351385 eV Total energy + Delta-G solvation = -3998.819115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.41283 -40.72222 -39.39094 -38.44910 -36.81684 -34.83699 -34.00399 -32.50176 -32.21929 -31.20945 -29.82933 -28.22043 -27.01359 -25.13535 -23.85979 -23.60104 -23.32507 -22.79680 -21.68418 -21.51891 -21.07700 -20.44866 -19.37048 -18.95553 -17.27367 -17.09964 -16.64620 -16.33886 -16.09360 -16.03647 -15.69069 -15.44454 -15.42552 -15.27831 -14.89064 -14.86259 -14.71132 -14.20130 -14.06257 -13.89880 -13.80091 -13.64829 -13.42649 -12.89184 -12.76893 -12.65831 -12.55176 -12.43650 -12.30557 -12.07025 -11.91575 -11.84686 -11.69880 -11.59593 -11.46840 -11.34186 -11.09283 -11.08666 -10.82434 -10.57861 -10.45093 -10.09918 -9.63936 -8.91054 -8.22443 -5.38060 0.52499 1.13880 1.33989 1.58734 1.66878 1.83986 2.32370 2.49352 2.66644 2.79111 3.22752 3.29448 3.47717 3.72751 3.77827 3.84381 3.90236 3.96605 3.97814 4.00965 4.10338 4.14990 4.23915 4.26659 4.41455 4.44928 4.48000 4.56151 4.61155 4.67737 4.72568 4.74366 4.78186 4.83200 4.90503 4.96294 5.00184 5.06027 5.14971 5.16334 5.19444 5.21351 5.26585 5.29801 5.37123 5.43516 5.56097 5.64226 5.85226 5.85812 6.40291 6.47686 6.66078 7.07803 7.32230 7.80250 8.25264 9.01663 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010042 B = 0.002607 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.646643 B =10737.197635 C =12859.925427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.158 3.842 3 H 0.065 0.935 4 N -0.712 5.712 5 C 0.596 3.404 6 O -0.591 6.591 7 C -0.315 4.315 8 C 0.082 3.918 9 N -0.318 5.318 10 N -0.353 5.353 11 C 0.157 3.843 12 C -0.187 4.187 13 C -0.181 4.181 14 C -0.153 4.153 15 C 0.134 3.866 16 C -0.093 4.093 17 H 0.078 0.922 18 C -0.098 4.098 19 C -0.125 4.125 20 C 0.152 3.848 21 N -0.616 5.616 22 C -0.350 4.350 23 H 0.054 0.946 24 C -0.080 4.080 25 N -0.945 5.945 26 Si 1.115 2.885 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.272 1.272 30 C 0.158 3.842 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.407 0.593 35 H 0.204 0.796 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.209 0.791 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.042 0.958 49 H -0.004 1.004 50 H 0.252 0.748 51 H -0.005 1.005 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 1.403 -23.922 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 H 0.083 0.917 4 N -0.362 5.362 5 C 0.385 3.615 6 O -0.473 6.473 7 C -0.330 4.330 8 C -0.106 4.106 9 N -0.138 5.138 10 N -0.131 5.131 11 C 0.037 3.963 12 C -0.206 4.206 13 C -0.218 4.218 14 C -0.191 4.191 15 C -0.019 4.019 16 C -0.114 4.114 17 H 0.096 0.904 18 C -0.136 4.136 19 C -0.164 4.164 20 C 0.026 3.974 21 N -0.341 5.341 22 C -0.480 4.480 23 H 0.071 0.929 24 C -0.275 4.275 25 N -0.588 5.588 26 Si 0.940 3.060 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.198 1.198 30 C 0.033 3.967 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.243 0.757 35 H 0.221 0.779 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.225 0.775 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.014 0.986 50 H 0.062 0.938 51 H 0.013 0.987 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.397 0.456 -23.888 25.674 hybrid contribution -0.394 1.206 -0.084 1.271 sum -9.791 1.662 -23.972 25.948 Atomic orbital electron populations 1.22122 0.93528 1.02854 1.02496 1.20841 0.94953 0.96000 0.82889 0.91723 1.45807 1.66938 1.14386 1.09020 1.17456 0.75989 0.85363 0.82661 1.90717 1.53730 1.17018 1.85880 1.20254 1.21628 0.95815 0.95321 1.24378 0.95469 0.95409 0.95322 1.77117 1.25145 1.06391 1.05117 1.48764 1.47606 1.06112 1.10594 1.21755 0.95261 1.04923 0.74319 1.22441 0.94398 1.03558 1.00163 1.23216 0.99029 0.95850 1.03694 1.23081 1.03328 1.01375 0.91294 1.23314 0.93119 0.96148 0.89278 1.21727 0.95633 1.00034 0.93978 0.90402 1.21453 1.01222 0.98095 0.92804 1.21848 0.95511 1.00557 0.98511 1.20771 0.93210 0.94546 0.88859 1.44359 1.50128 1.38605 1.00968 1.20238 1.14417 1.04361 1.08966 0.92867 1.27193 0.95849 1.07197 0.97297 1.70872 1.44857 0.99369 1.43683 0.82871 0.75743 0.71528 0.75864 1.21235 1.21749 1.19756 1.20941 0.93140 0.94543 0.88125 0.90061 0.93174 0.91331 0.75723 0.77909 0.87551 0.85211 0.89148 0.86987 0.89359 0.88274 0.86296 0.77461 0.92986 0.89016 0.90724 0.92442 0.93899 0.98582 0.93801 0.98670 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.14 71.98 0.66 -2.80 16 2 C 0.16 4.42 2.16 44.99 0.10 4.51 16 3 H 0.06 2.11 7.58 -2.39 -0.02 2.10 16 4 N -0.71 -18.99 4.47 -445.80 -1.99 -20.99 16 5 C 0.60 17.38 7.78 86.66 0.67 18.06 16 6 O -0.59 -20.80 16.56 -4.06 -0.07 -20.87 16 7 C -0.32 -7.78 6.13 -20.15 -0.12 -7.90 16 8 C 0.08 1.88 11.50 85.65 0.99 2.86 16 9 N -0.32 -7.53 12.14 -56.27 -0.68 -8.22 16 10 N -0.35 -6.61 3.65 -346.30 -1.26 -7.88 16 11 C 0.16 1.71 6.77 86.38 0.58 2.30 16 12 C -0.19 -2.44 5.92 -10.80 -0.06 -2.50 16 13 C -0.18 -1.94 10.18 30.62 0.31 -1.63 16 14 C -0.15 -1.31 10.25 30.62 0.31 -0.99 16 15 C 0.13 2.70 11.25 84.28 0.95 3.64 16 16 C -0.09 -2.94 1.97 -10.72 -0.02 -2.96 16 17 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 18 C -0.10 -2.95 4.86 30.62 0.15 -2.80 16 19 C -0.13 -4.47 6.06 30.53 0.19 -4.29 16 20 C 0.15 7.26 4.66 86.22 0.40 7.66 16 21 N -0.62 -31.10 2.86 -699.94 -2.00 -33.10 16 22 C -0.35 -19.63 9.49 84.03 0.80 -18.83 16 23 H 0.05 2.95 7.94 -2.91 -0.02 2.92 16 24 C -0.08 -4.58 4.69 84.86 0.40 -4.18 16 25 N -0.95 -58.75 12.40 21.65 0.27 -58.48 16 26 Si 1.12 51.31 29.99 68.60 2.06 53.37 16 27 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 28 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 30 C 0.16 6.61 5.56 86.36 0.48 7.09 16 31 H 0.08 1.63 6.41 -2.39 -0.02 1.61 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.41 9.54 7.37 -92.71 -0.68 8.85 16 35 H 0.20 3.73 7.50 -2.91 -0.02 3.71 16 36 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.13 0.63 7.79 -2.39 -0.02 0.62 16 38 H 0.09 1.74 7.90 -2.38 -0.02 1.72 16 39 H 0.11 0.86 8.03 -2.38 -0.02 0.84 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.21 3.07 8.06 -2.91 -0.02 3.04 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.09 2.15 6.37 -2.39 -0.02 2.14 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 47 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 48 H 0.04 2.33 6.30 -2.39 -0.02 2.31 16 49 H 0.00 -0.19 7.87 -2.38 -0.02 -0.21 16 50 H 0.25 16.09 6.71 -92.71 -0.62 15.47 16 51 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 52 H 0.05 2.09 7.44 -2.39 -0.02 2.07 16 Total: -1.00 -76.70 414.59 3.47 -73.23 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.38 Total: 25.70 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 6.78 Total: -2.76 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -5.67 Total: -128.66 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.07 Total: -20.87 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.06 Total: 53.37 kcal Total: -76.70 3.47 -73.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.478 kcal (2) G-P(sol) polarization free energy of solvation -76.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds