Wall clock time and date at job start Wed Apr 1 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46489 * 2 1 4 4 N 1.46496 * 109.47062 * 119.99483 * 2 1 3 5 5 C 1.34772 * 120.00146 * 274.99997 * 4 2 1 6 6 O 1.21608 * 120.00418 * 0.02562 * 5 4 2 7 7 C 1.47433 * 120.00114 * 180.02562 * 5 4 2 8 8 C 1.41288 * 126.41268 * 0.02562 * 7 5 4 9 9 N 1.30449 * 108.02023 * 180.02562 * 8 7 5 10 10 N 1.39927 * 108.90101 * 359.78005 * 9 8 7 11 11 C 1.46499 * 125.75729 * 180.24071 * 10 9 8 12 12 C 1.53004 * 109.47158 * 305.14904 * 11 10 9 13 13 C 1.52993 * 117.50024 * 243.74862 * 12 11 10 14 14 C 1.52996 * 117.50013 * 175.08929 * 12 11 10 15 15 C 1.34264 * 108.48904 * 0.37061 * 10 9 8 16 16 C 1.52994 * 109.47020 * 240.00014 * 2 1 3 17 17 H 1.09006 * 109.50000 * 185.06180 * 16 2 1 18 18 C 1.53039 * 109.50396 * 64.99755 * 16 2 1 19 19 C 1.53032 * 109.54214 * 178.68082 * 18 16 2 20 20 C 1.53193 * 109.31212 * 61.36733 * 19 18 16 21 21 N 1.46931 * 108.77437 * 305.36193 * 20 19 18 22 22 C 1.36936 * 120.63524 * 233.58773 * 21 20 19 23 23 H 1.07992 * 120.00402 * 151.83009 * 22 21 20 24 24 C 1.38816 * 119.99596 * 331.82941 * 22 21 20 25 25 N 1.31614 * 120.00138 * 343.08424 * 24 22 21 26 26 Si 1.86798 * 119.99695 * 163.08624 * 24 22 21 27 27 H 1.48497 * 109.47222 * 59.99986 * 26 24 22 28 28 H 1.48501 * 109.47141 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47221 * 299.99556 * 26 24 22 30 30 C 1.46926 * 118.73567 * 53.61037 * 21 20 19 31 31 H 1.09001 * 109.46489 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47031 * 300.00219 * 1 2 3 33 33 H 1.08997 * 109.47072 * 60.00508 * 1 2 3 34 34 H 0.97004 * 120.00111 * 95.00693 * 4 2 1 35 35 H 1.07996 * 125.99141 * 359.97438 * 8 7 5 36 36 H 1.08994 * 109.47138 * 65.14844 * 11 10 9 37 37 H 1.09006 * 109.47028 * 185.15440 * 11 10 9 38 38 H 1.09000 * 115.54643 * 29.41416 * 12 11 10 39 39 H 1.08998 * 117.50169 * 359.97438 * 13 12 11 40 40 H 1.09005 * 117.49813 * 145.01744 * 13 12 11 41 41 H 1.09005 * 117.49541 * 214.98244 * 14 12 11 42 42 H 1.09000 * 117.49627 * 359.97438 * 14 12 11 43 43 H 1.08002 * 126.28729 * 179.90616 * 15 10 9 44 44 H 1.09007 * 109.45617 * 298.70530 * 18 16 2 45 45 H 1.09002 * 109.45585 * 58.67244 * 18 16 2 46 46 H 1.08997 * 109.50138 * 181.31371 * 19 18 16 47 47 H 1.08996 * 109.49893 * 301.38531 * 19 18 16 48 48 H 1.08998 * 109.59340 * 65.14685 * 20 19 18 49 49 H 1.09001 * 109.59230 * 185.57962 * 20 19 18 50 50 H 0.97005 * 119.99785 * 179.97438 * 25 24 22 51 51 H 1.09005 * 109.58990 * 186.60660 * 30 21 20 52 52 H 1.08996 * 109.58939 * 66.17978 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8575 1.1617 2.4118 7 6 2.6390 -0.7128 3.5608 8 6 3.0130 -2.0724 3.6505 9 7 3.3915 -2.3068 4.8766 10 7 3.2842 -1.1248 5.6179 11 6 3.6190 -0.9701 7.0357 12 6 2.8439 -2.0014 7.8583 13 6 1.8236 -1.4757 8.8699 14 6 3.1433 -2.0795 9.3566 15 6 2.8199 -0.1571 4.8114 16 6 2.0400 -0.7212 -1.2492 17 1 3.1263 -0.8007 -1.2055 18 6 1.6355 0.0685 -2.4961 19 6 2.1733 -0.6347 -3.7443 20 6 1.5613 -2.0358 -3.8398 21 7 1.8221 -2.7524 -2.5839 22 6 2.4220 -3.9833 -2.5945 23 1 3.0109 -4.3043 -1.7481 24 6 2.2730 -4.8185 -3.6932 25 7 1.3126 -4.5945 -4.5648 26 14 3.4357 -6.2605 -3.9347 27 1 3.3356 -7.1773 -2.7709 28 1 3.0677 -6.9910 -5.1741 29 1 4.8287 -5.7590 -4.0515 30 6 1.4265 -2.1233 -1.3164 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 2.2492 -1.6317 1.1527 35 1 2.9890 -2.7917 2.8453 36 1 4.6890 -1.1241 7.1752 37 1 3.3503 0.0336 7.3651 38 1 2.6079 -2.9324 7.3429 39 1 1.7049 -0.3952 8.9499 40 1 0.9165 -2.0612 9.0205 41 1 3.1040 -3.0620 9.8272 42 1 3.8928 -1.3965 9.7563 43 1 2.6278 0.8689 5.0889 44 1 0.5484 0.1269 -2.5521 45 1 2.0507 1.0748 -2.4391 46 1 1.9049 -0.0594 -4.6303 47 1 3.2583 -0.7150 -3.6776 48 1 0.4858 -1.9549 -3.9977 49 1 2.0149 -2.5770 -4.6702 50 1 1.2088 -5.1779 -5.3327 51 1 1.7912 -2.7221 -0.4818 52 1 0.3401 -2.0494 -1.2685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025589138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:41 Heat of formation + Delta-G solvation = 78.061295 kcal Electronic energy + Delta-G solvation = -30346.316078 eV Core-core repulsion = 26348.572952 eV Total energy + Delta-G solvation = -3997.743126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.55224 -39.49737 -38.06587 -37.73469 -35.07703 -33.39839 -32.84109 -31.13654 -30.42245 -30.23373 -28.11310 -27.44643 -25.27471 -24.18305 -22.93852 -22.70066 -22.14519 -21.93615 -20.71488 -20.39040 -19.73399 -18.64527 -18.05707 -16.77724 -16.35569 -15.90975 -15.76361 -15.32391 -14.89577 -14.78211 -14.71108 -14.35292 -14.05020 -13.91524 -13.72733 -13.41136 -13.30491 -13.02738 -12.91657 -12.43937 -12.30643 -12.23037 -12.16431 -12.06627 -11.75093 -11.56192 -11.19553 -10.99994 -10.95799 -10.87845 -10.62724 -10.50140 -10.45454 -10.16466 -10.07765 -9.85050 -9.77637 -9.74132 -9.52655 -9.36358 -8.96603 -8.66296 -8.43948 -6.63568 -5.77300 -3.19898 1.39974 2.03650 2.09198 3.21891 3.38899 3.44987 3.45154 3.46045 3.56144 3.88191 4.26039 4.36928 4.46747 4.49895 4.55639 4.67350 4.87317 4.93623 5.03259 5.11055 5.15485 5.29271 5.29520 5.35979 5.43643 5.49322 5.56672 5.58278 5.64813 5.67750 5.75015 5.78733 5.93239 6.08975 6.18876 6.26305 6.29382 6.31593 6.41420 6.56571 6.58941 6.63158 6.72899 6.76616 6.85528 6.91305 7.03730 7.35457 7.43110 7.69632 7.77863 7.80285 8.45810 8.46721 9.22756 9.86510 10.43512 11.30829 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012367 B = 0.002333 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.630901 B =11996.977569 C =13758.532680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 H 0.081 0.919 4 N -0.716 5.716 5 C 0.595 3.405 6 O -0.559 6.559 7 C -0.289 4.289 8 C 0.084 3.916 9 N -0.294 5.294 10 N -0.360 5.360 11 C 0.163 3.837 12 C -0.172 4.172 13 C -0.178 4.178 14 C -0.169 4.169 15 C 0.125 3.875 16 C -0.113 4.113 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.143 4.143 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 C 0.151 3.849 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.192 0.808 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.186 0.814 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.017 0.983 49 H 0.085 0.915 50 H 0.254 0.746 51 H 0.047 0.953 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 9.651 22.581 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.099 0.901 4 N -0.366 5.366 5 C 0.382 3.618 6 O -0.439 6.439 7 C -0.304 4.304 8 C -0.104 4.104 9 N -0.113 5.113 10 N -0.139 5.139 11 C 0.042 3.958 12 C -0.190 4.190 13 C -0.215 4.215 14 C -0.207 4.207 15 C -0.026 4.026 16 C -0.134 4.134 17 H 0.090 0.910 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.383 4.383 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.211 1.211 30 C 0.025 3.975 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.208 0.792 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.203 0.797 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.035 0.965 49 H 0.103 0.897 50 H 0.064 0.936 51 H 0.065 0.935 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.629 9.492 23.418 25.405 hybrid contribution 0.372 -0.679 -0.784 1.102 sum 3.001 8.813 22.635 24.475 Atomic orbital electron populations 1.22262 0.95544 1.02680 1.01788 1.20996 0.94066 0.96697 0.83462 0.90071 1.45950 1.66979 1.14229 1.09450 1.17214 0.76704 0.85773 0.82105 1.90739 1.52117 1.15705 1.85296 1.20326 1.19559 0.95189 0.95349 1.24172 0.95949 0.95346 0.94965 1.77163 1.24627 1.04828 1.04730 1.48480 1.48911 1.07064 1.09443 1.21376 1.00460 0.99491 0.74461 1.22566 1.03264 1.01564 0.91632 1.23132 0.93969 1.01235 1.03123 1.22991 0.99404 1.03183 0.95074 1.22937 0.94415 0.95409 0.89858 1.21954 1.00914 0.97998 0.92523 0.90977 1.21417 1.00495 0.97205 0.94719 1.22180 1.00597 0.99596 0.95806 1.20781 0.96559 0.88006 0.90206 1.44013 1.69896 1.17447 0.99959 1.19110 1.23416 0.92019 1.03713 0.91836 1.25034 0.97371 0.97637 0.99552 1.70025 1.30199 1.39625 1.14737 0.86396 0.80969 0.82313 0.77232 1.20893 1.21687 1.21078 1.21001 0.96194 0.90384 0.89956 0.91621 0.92907 0.91532 0.76424 0.79151 0.88847 0.88219 0.86206 0.88458 0.88430 0.88210 0.88370 0.79724 0.92255 0.93565 0.93294 0.92830 0.96477 0.89677 0.93616 0.93462 0.95628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.76 37.16 0.33 -2.03 16 2 C 0.15 2.25 2.35 -67.93 -0.16 2.09 16 3 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 4 N -0.72 -9.87 5.00 -54.88 -0.27 -10.14 16 5 C 0.59 8.63 7.78 -12.52 -0.10 8.53 16 6 O -0.56 -9.67 16.56 5.27 0.09 -9.58 16 7 C -0.29 -3.58 6.13 -105.07 -0.64 -4.22 16 8 C 0.08 0.97 11.50 -16.98 -0.20 0.77 16 9 N -0.29 -3.51 12.13 30.86 0.37 -3.14 16 10 N -0.36 -3.51 3.65 -60.81 -0.22 -3.73 16 11 C 0.16 1.01 6.77 -4.04 -0.03 0.99 16 12 C -0.17 -1.12 5.92 -90.62 -0.54 -1.65 16 13 C -0.18 -0.95 10.18 -26.70 -0.27 -1.22 16 14 C -0.17 -0.80 10.25 -26.70 -0.27 -1.08 16 15 C 0.12 1.29 11.25 -16.56 -0.19 1.11 16 16 C -0.11 -1.87 2.27 -90.50 -0.21 -2.08 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.10 -1.65 4.89 -26.69 -0.13 -1.78 16 19 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 20 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 21 N -0.59 -14.30 2.99 -172.32 -0.52 -14.81 16 22 C -0.25 -6.75 9.58 -15.06 -0.14 -6.90 16 23 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 24 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 25 N -0.90 -25.88 11.20 55.49 0.62 -25.26 16 26 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 30 C 0.15 2.96 5.26 -3.71 -0.02 2.94 16 31 H 0.06 0.97 6.23 -51.93 -0.32 0.64 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.91 6.60 -51.93 -0.34 0.57 16 34 H 0.40 5.06 6.23 -40.82 -0.25 4.80 16 35 H 0.19 1.82 7.50 -52.49 -0.39 1.43 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.37 7.80 -51.93 -0.40 -0.03 16 38 H 0.12 1.05 7.90 -51.93 -0.41 0.64 16 39 H 0.10 0.42 8.03 -51.93 -0.42 0.00 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.06 0.97 6.63 -51.93 -0.34 0.62 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 50 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 51 H 0.05 0.88 6.75 -51.93 -0.35 0.53 16 52 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 LS Contribution 410.68 15.07 6.19 6.19 Total: -1.00 -32.69 410.68 -10.07 -42.76 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.46 Total: 4.71 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.83 Total: -3.42 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.02 Total: -57.08 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.69 -10.07 -42.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.821 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds