Wall clock time and date at job start Wed Apr 1 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46489 * 2 1 4 4 N 1.46496 * 109.47062 * 119.99483 * 2 1 3 5 5 C 1.34772 * 120.00146 * 274.99997 * 4 2 1 6 6 O 1.21608 * 120.00418 * 0.02562 * 5 4 2 7 7 C 1.47433 * 120.00114 * 180.02562 * 5 4 2 8 8 C 1.41288 * 126.41268 * 0.02562 * 7 5 4 9 9 N 1.30449 * 108.02023 * 180.02562 * 8 7 5 10 10 N 1.39927 * 108.90101 * 359.78005 * 9 8 7 11 11 C 1.46499 * 125.75729 * 180.24071 * 10 9 8 12 12 C 1.53004 * 109.47158 * 305.14904 * 11 10 9 13 13 C 1.52993 * 117.50024 * 243.74862 * 12 11 10 14 14 C 1.52996 * 117.50013 * 175.08929 * 12 11 10 15 15 C 1.34264 * 108.48904 * 0.37061 * 10 9 8 16 16 C 1.52994 * 109.47020 * 240.00014 * 2 1 3 17 17 H 1.09006 * 109.50000 * 185.06180 * 16 2 1 18 18 C 1.53039 * 109.50396 * 64.99755 * 16 2 1 19 19 C 1.53032 * 109.54214 * 178.68082 * 18 16 2 20 20 C 1.53193 * 109.31212 * 61.36733 * 19 18 16 21 21 N 1.46931 * 108.77437 * 305.36193 * 20 19 18 22 22 C 1.36936 * 120.63524 * 233.58773 * 21 20 19 23 23 H 1.07992 * 120.00402 * 151.83009 * 22 21 20 24 24 C 1.38816 * 119.99596 * 331.82941 * 22 21 20 25 25 N 1.31614 * 120.00138 * 343.08424 * 24 22 21 26 26 Si 1.86798 * 119.99695 * 163.08624 * 24 22 21 27 27 H 1.48497 * 109.47222 * 59.99986 * 26 24 22 28 28 H 1.48501 * 109.47141 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47221 * 299.99556 * 26 24 22 30 30 C 1.46926 * 118.73567 * 53.61037 * 21 20 19 31 31 H 1.09001 * 109.46489 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47031 * 300.00219 * 1 2 3 33 33 H 1.08997 * 109.47072 * 60.00508 * 1 2 3 34 34 H 0.97004 * 120.00111 * 95.00693 * 4 2 1 35 35 H 1.07996 * 125.99141 * 359.97438 * 8 7 5 36 36 H 1.08994 * 109.47138 * 65.14844 * 11 10 9 37 37 H 1.09006 * 109.47028 * 185.15440 * 11 10 9 38 38 H 1.09000 * 115.54643 * 29.41416 * 12 11 10 39 39 H 1.08998 * 117.50169 * 359.97438 * 13 12 11 40 40 H 1.09005 * 117.49813 * 145.01744 * 13 12 11 41 41 H 1.09005 * 117.49541 * 214.98244 * 14 12 11 42 42 H 1.09000 * 117.49627 * 359.97438 * 14 12 11 43 43 H 1.08002 * 126.28729 * 179.90616 * 15 10 9 44 44 H 1.09007 * 109.45617 * 298.70530 * 18 16 2 45 45 H 1.09002 * 109.45585 * 58.67244 * 18 16 2 46 46 H 1.08997 * 109.50138 * 181.31371 * 19 18 16 47 47 H 1.08996 * 109.49893 * 301.38531 * 19 18 16 48 48 H 1.08998 * 109.59340 * 65.14685 * 20 19 18 49 49 H 1.09001 * 109.59230 * 185.57962 * 20 19 18 50 50 H 0.97005 * 119.99785 * 179.97438 * 25 24 22 51 51 H 1.09005 * 109.58990 * 186.60660 * 30 21 20 52 52 H 1.08996 * 109.58939 * 66.17978 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8575 1.1617 2.4118 7 6 2.6390 -0.7128 3.5608 8 6 3.0130 -2.0724 3.6505 9 7 3.3915 -2.3068 4.8766 10 7 3.2842 -1.1248 5.6179 11 6 3.6190 -0.9701 7.0357 12 6 2.8439 -2.0014 7.8583 13 6 1.8236 -1.4757 8.8699 14 6 3.1433 -2.0795 9.3566 15 6 2.8199 -0.1571 4.8114 16 6 2.0400 -0.7212 -1.2492 17 1 3.1263 -0.8007 -1.2055 18 6 1.6355 0.0685 -2.4961 19 6 2.1733 -0.6347 -3.7443 20 6 1.5613 -2.0358 -3.8398 21 7 1.8221 -2.7524 -2.5839 22 6 2.4220 -3.9833 -2.5945 23 1 3.0109 -4.3043 -1.7481 24 6 2.2730 -4.8185 -3.6932 25 7 1.3126 -4.5945 -4.5648 26 14 3.4357 -6.2605 -3.9347 27 1 3.3356 -7.1773 -2.7709 28 1 3.0677 -6.9910 -5.1741 29 1 4.8287 -5.7590 -4.0515 30 6 1.4265 -2.1233 -1.3164 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 2.2492 -1.6317 1.1527 35 1 2.9890 -2.7917 2.8453 36 1 4.6890 -1.1241 7.1752 37 1 3.3503 0.0336 7.3651 38 1 2.6079 -2.9324 7.3429 39 1 1.7049 -0.3952 8.9499 40 1 0.9165 -2.0612 9.0205 41 1 3.1040 -3.0620 9.8272 42 1 3.8928 -1.3965 9.7563 43 1 2.6278 0.8689 5.0889 44 1 0.5484 0.1269 -2.5521 45 1 2.0507 1.0748 -2.4391 46 1 1.9049 -0.0594 -4.6303 47 1 3.2583 -0.7150 -3.6776 48 1 0.4858 -1.9549 -3.9977 49 1 2.0149 -2.5770 -4.6702 50 1 1.2088 -5.1779 -5.3327 51 1 1.7912 -2.7221 -0.4818 52 1 0.3401 -2.0494 -1.2685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025589138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:40 Heat of formation + Delta-G solvation = 59.289381 kcal Electronic energy + Delta-G solvation = -30347.130090 eV Core-core repulsion = 26348.572952 eV Total energy + Delta-G solvation = -3998.557137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.38581 -40.70381 -39.28002 -38.42351 -36.57383 -34.67437 -33.96763 -32.47734 -32.20801 -31.18663 -29.45817 -28.16990 -27.18161 -25.42036 -23.99877 -23.58499 -23.30481 -22.78046 -21.79678 -21.43356 -20.72044 -20.05714 -19.01921 -18.54983 -17.24410 -16.93721 -16.78511 -16.62739 -16.07653 -15.93382 -15.67497 -15.55642 -15.41060 -15.03163 -14.77693 -14.73327 -14.62558 -14.03180 -13.98346 -13.90926 -13.69324 -13.55046 -13.25966 -12.98997 -12.75435 -12.71146 -12.66537 -12.41560 -12.27833 -12.05134 -11.99821 -11.92004 -11.62850 -11.45435 -11.44406 -11.21245 -11.07195 -11.03380 -10.78938 -10.55372 -10.47738 -10.06625 -9.61130 -8.60562 -7.82851 -5.27587 0.55872 1.16683 1.36337 1.48523 1.50940 1.57003 2.37072 2.51684 2.54202 2.81239 3.31539 3.32165 3.63643 3.76453 3.80549 3.92061 3.98245 3.99020 4.05219 4.10773 4.14057 4.17337 4.27360 4.40233 4.48472 4.50222 4.52895 4.63850 4.69880 4.75063 4.76336 4.76664 4.90919 4.95838 4.98181 5.03684 5.10934 5.17366 5.19304 5.21324 5.27033 5.34768 5.39585 5.40127 5.53430 5.59942 5.65904 5.72910 5.83516 5.88830 6.43432 6.50825 6.69730 7.19561 7.35237 7.91898 8.43535 9.22936 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012367 B = 0.002333 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.630901 B =11996.977569 C =13758.532680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.162 3.838 3 H 0.081 0.919 4 N -0.713 5.713 5 C 0.597 3.403 6 O -0.589 6.589 7 C -0.315 4.315 8 C 0.081 3.919 9 N -0.319 5.319 10 N -0.353 5.353 11 C 0.156 3.844 12 C -0.186 4.186 13 C -0.177 4.177 14 C -0.157 4.157 15 C 0.136 3.864 16 C -0.097 4.097 17 H 0.065 0.935 18 C -0.097 4.097 19 C -0.132 4.132 20 C 0.175 3.825 21 N -0.609 5.609 22 C -0.258 4.258 23 H 0.069 0.931 24 C -0.052 4.052 25 N -0.934 5.934 26 Si 0.963 3.037 27 H -0.275 1.275 28 H -0.297 1.297 29 H -0.280 1.280 30 C 0.150 3.850 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.406 0.594 35 H 0.202 0.798 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.211 0.789 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.048 0.952 48 H -0.004 1.004 49 H 0.049 0.951 50 H 0.248 0.752 51 H 0.053 0.947 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 11.117 24.781 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 H 0.099 0.901 4 N -0.364 5.364 5 C 0.386 3.614 6 O -0.472 6.472 7 C -0.330 4.330 8 C -0.107 4.107 9 N -0.139 5.139 10 N -0.131 5.131 11 C 0.037 3.963 12 C -0.205 4.205 13 C -0.214 4.214 14 C -0.194 4.194 15 C -0.017 4.017 16 C -0.118 4.118 17 H 0.084 0.916 18 C -0.135 4.135 19 C -0.171 4.171 20 C 0.049 3.951 21 N -0.332 5.332 22 C -0.388 4.388 23 H 0.086 0.914 24 C -0.247 4.247 25 N -0.581 5.581 26 Si 0.791 3.209 27 H -0.200 1.200 28 H -0.223 1.223 29 H -0.206 1.206 30 C 0.025 3.975 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.242 0.758 35 H 0.219 0.781 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.135 0.865 43 H 0.227 0.773 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.014 0.986 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.072 0.928 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.581 10.945 25.664 28.129 hybrid contribution 0.061 -1.135 -1.356 1.769 sum 3.642 9.811 24.308 26.465 Atomic orbital electron populations 1.22203 0.95067 1.02283 1.02121 1.20815 0.94263 0.96287 0.82908 0.90140 1.45902 1.66810 1.14441 1.09199 1.17440 0.76005 0.85387 0.82547 1.90714 1.53696 1.16954 1.85792 1.20256 1.21607 0.95644 0.95447 1.24375 0.95620 0.95420 0.95275 1.77125 1.25391 1.06304 1.05055 1.48769 1.47684 1.06200 1.10459 1.21753 1.01052 1.01066 0.72445 1.22435 1.04796 1.00791 0.92496 1.23216 0.93854 1.02067 1.02277 1.23083 0.99420 1.03563 0.93369 1.23326 0.92806 0.96321 0.89239 1.21731 1.00161 0.96160 0.93724 0.91641 1.21412 1.00865 0.98156 0.93100 1.22015 0.99871 0.97030 0.98145 1.20604 0.95204 0.90197 0.89096 1.44276 1.70099 1.17225 1.01577 1.19474 1.22956 0.92798 1.03621 0.91376 1.25758 0.98874 1.00359 0.99729 1.70181 1.31949 1.40735 1.15211 0.85412 0.79067 0.79526 0.76867 1.20037 1.22349 1.20645 1.21131 0.96200 0.91991 0.88183 0.92319 0.93051 0.90723 0.75815 0.78130 0.87887 0.85097 0.89040 0.86940 0.89114 0.88317 0.86495 0.77288 0.91794 0.90757 0.91326 0.93342 0.98603 0.93256 0.94285 0.92826 0.95899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 8.76 71.98 0.63 -3.67 16 2 C 0.16 4.53 2.35 44.99 0.11 4.63 16 3 H 0.08 2.34 7.58 -2.39 -0.02 2.32 16 4 N -0.71 -18.89 5.00 -445.81 -2.23 -21.12 16 5 C 0.60 16.68 7.78 86.67 0.67 17.35 16 6 O -0.59 -19.66 16.56 -4.05 -0.07 -19.73 16 7 C -0.31 -7.43 6.13 -20.15 -0.12 -7.55 16 8 C 0.08 1.82 11.50 85.65 0.99 2.80 16 9 N -0.32 -7.39 12.13 -56.28 -0.68 -8.07 16 10 N -0.35 -6.29 3.65 -346.29 -1.26 -7.56 16 11 C 0.16 1.58 6.77 86.38 0.58 2.16 16 12 C -0.19 -2.18 5.92 -10.80 -0.06 -2.24 16 13 C -0.18 -1.56 10.18 30.61 0.31 -1.25 16 14 C -0.16 -1.18 10.25 30.61 0.31 -0.86 16 15 C 0.14 2.55 11.25 84.27 0.95 3.50 16 16 C -0.10 -3.07 2.27 -10.72 -0.02 -3.10 16 17 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 18 C -0.10 -3.01 4.89 30.62 0.15 -2.86 16 19 C -0.13 -4.83 6.08 30.67 0.19 -4.65 16 20 C 0.17 8.34 5.30 86.36 0.46 8.80 16 21 N -0.61 -29.69 2.99 -699.08 -2.09 -31.78 16 22 C -0.26 -13.89 9.58 84.03 0.81 -13.08 16 23 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 24 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 25 N -0.93 -55.20 11.20 21.65 0.24 -54.96 16 26 Si 0.96 44.71 29.59 68.60 2.03 46.74 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 30 C 0.15 5.80 5.26 86.36 0.45 6.26 16 31 H 0.06 1.67 6.23 -2.39 -0.01 1.65 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.89 6.60 -2.39 -0.02 1.88 16 34 H 0.41 9.89 6.23 -92.71 -0.58 9.31 16 35 H 0.20 3.77 7.50 -2.91 -0.02 3.75 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.13 0.50 7.80 -2.38 -0.02 0.48 16 38 H 0.09 1.62 7.90 -2.39 -0.02 1.60 16 39 H 0.11 0.65 8.03 -2.39 -0.02 0.63 16 40 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.21 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.06 1.94 6.63 -2.38 -0.02 1.93 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 48 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 49 H 0.05 2.69 6.06 -2.39 -0.01 2.68 16 50 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 51 H 0.05 1.97 6.75 -2.38 -0.02 1.95 16 52 H 0.02 0.92 6.06 -2.39 -0.01 0.90 16 Total: -1.00 -71.59 410.68 3.09 -68.49 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.34 Total: 24.20 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.81 Total: 3.78 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -6.03 Total: -123.49 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.07 Total: -19.73 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -71.59 3.09 -68.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.784 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds