Wall clock time and date at job start Wed Apr 1 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47205 * 2 1 4 4 N 1.46498 * 109.47207 * 239.99389 * 2 1 3 5 5 C 1.34774 * 119.99825 * 85.00753 * 4 2 1 6 6 O 1.21607 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.47432 * 120.00074 * 180.02562 * 5 4 2 8 8 C 1.41285 * 126.41222 * 359.68306 * 7 5 4 9 9 N 1.30450 * 108.02322 * 179.88316 * 8 7 5 10 10 N 1.39941 * 108.89377 * 0.38025 * 9 8 7 11 11 C 1.46503 * 125.75146 * 179.77560 * 10 9 8 12 12 C 1.53002 * 109.47108 * 304.97648 * 11 10 9 13 13 C 1.52999 * 117.49673 * 243.62257 * 12 11 10 14 14 C 1.52994 * 59.99879 * 252.51155 * 13 12 11 15 15 C 1.34258 * 108.49086 * 359.75678 * 10 9 8 16 16 C 1.53007 * 109.46910 * 119.99380 * 2 1 3 17 17 H 1.08995 * 109.52517 * 180.02562 * 16 2 1 18 18 C 1.53032 * 109.49786 * 300.16433 * 16 2 1 19 19 C 1.53358 * 109.60590 * 181.32218 * 18 16 2 20 20 C 1.53193 * 109.15016 * 298.71093 * 19 18 16 21 21 N 1.46928 * 108.89119 * 54.57631 * 20 19 18 22 22 C 1.36938 * 120.62664 * 126.34115 * 21 20 19 23 23 H 1.07999 * 120.00114 * 332.50326 * 22 21 20 24 24 C 1.38816 * 119.99995 * 152.51181 * 22 21 20 25 25 N 1.31612 * 120.00415 * 159.33584 * 24 22 21 26 26 Si 1.86806 * 119.99631 * 339.33505 * 24 22 21 27 27 H 1.48501 * 109.46946 * 92.98062 * 26 24 22 28 28 H 1.48496 * 109.46962 * 212.98533 * 26 24 22 29 29 H 1.48503 * 109.47163 * 332.98296 * 26 24 22 30 30 C 1.46924 * 118.74149 * 306.32206 * 21 20 19 31 31 H 1.09000 * 109.47205 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47286 * 300.00405 * 1 2 3 33 33 H 1.09002 * 109.46492 * 60.00419 * 1 2 3 34 34 H 0.96995 * 120.00216 * 264.99630 * 4 2 1 35 35 H 1.08001 * 125.99135 * 0.02562 * 8 7 5 36 36 H 1.09003 * 109.46777 * 64.97636 * 11 10 9 37 37 H 1.08997 * 109.46722 * 184.97561 * 11 10 9 38 38 H 1.08998 * 115.54622 * 29.32884 * 12 11 10 39 39 H 1.09001 * 117.50064 * 0.02562 * 13 12 11 40 40 H 1.08999 * 117.49701 * 145.01991 * 13 12 11 41 41 H 1.08997 * 117.50468 * 252.51098 * 14 13 12 42 42 H 1.09009 * 117.50039 * 107.49078 * 14 13 12 43 43 H 1.08005 * 126.28902 * 180.02562 * 15 10 9 44 44 H 1.09003 * 109.46430 * 301.33458 * 18 16 2 45 45 H 1.09007 * 109.46205 * 61.31183 * 18 16 2 46 46 H 1.09004 * 109.68392 * 178.74492 * 19 18 16 47 47 H 1.08999 * 109.47316 * 58.55281 * 19 18 16 48 48 H 1.08998 * 109.58670 * 294.72289 * 20 19 18 49 49 H 1.08995 * 109.58604 * 174.43380 * 20 19 18 50 50 H 0.97004 * 119.99909 * 179.97438 * 25 24 22 51 51 H 1.08995 * 109.58642 * 173.39531 * 30 21 20 52 52 H 1.09005 * 109.58500 * 293.82251 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3570 6 8 1.8577 1.1614 -2.4119 7 6 2.6382 -0.7136 -3.5609 8 6 3.0164 -2.0721 -3.6493 9 7 3.3904 -2.3079 -4.8766 10 7 3.2793 -1.1269 -5.6190 11 6 3.6084 -0.9739 -7.0384 12 6 5.0477 -1.4330 -7.2806 13 6 6.0514 -0.3847 -7.7648 14 6 5.5461 -1.4616 -8.7268 15 6 2.8200 -0.1577 -4.8113 16 6 2.0400 -0.7212 1.2494 17 1 3.1300 -0.7213 1.2505 18 6 1.5268 -0.0025 2.4992 19 6 2.0636 -0.7038 3.7530 20 6 1.5531 -2.1480 3.7784 21 7 1.9179 -2.8038 2.5152 22 6 2.6064 -3.9875 2.5171 23 1 3.2587 -4.2315 3.3426 24 6 2.4660 -4.8738 1.4580 25 7 3.3875 -5.7873 1.2377 26 14 0.9689 -4.7699 0.3455 27 1 1.2799 -3.9086 -0.8236 28 1 0.6064 -6.1310 -0.1248 29 1 -0.1695 -4.1876 1.1005 30 6 1.5297 -2.1656 1.2500 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 2.2491 -1.6318 -1.1524 35 1 2.9969 -2.7901 -2.8427 36 1 2.9280 -1.5803 -7.6364 37 1 3.5080 0.0732 -7.3238 38 1 5.4138 -2.2073 -6.6066 39 1 5.6865 0.6321 -7.9104 40 1 7.0783 -0.4692 -7.4092 41 1 6.2404 -2.2547 -9.0042 42 1 4.8485 -1.1535 -9.5058 43 1 2.6278 0.8681 -5.0890 44 1 1.8682 1.0327 2.4888 45 1 0.4371 -0.0254 2.5096 46 1 1.7170 -0.1797 4.6436 47 1 3.1534 -0.7034 3.7311 48 1 0.4690 -2.1504 3.8915 49 1 2.0088 -2.6819 4.6122 50 1 3.2891 -6.4069 0.4978 51 1 1.9719 -2.7098 0.4155 52 1 0.4436 -2.1695 1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025589139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:46 Heat of formation + Delta-G solvation = 84.093066 kcal Electronic energy + Delta-G solvation = -31073.398753 eV Core-core repulsion = 27075.917184 eV Total energy + Delta-G solvation = -3997.481569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.46326 -39.55272 -38.12548 -37.79900 -35.13278 -33.34284 -32.95242 -31.45952 -30.63835 -30.21820 -28.46949 -27.40017 -25.30022 -24.33140 -23.00317 -22.85698 -22.22309 -21.87219 -20.63651 -20.31614 -19.70603 -18.96091 -18.07051 -16.82992 -16.38833 -15.86676 -15.84257 -15.36431 -15.21364 -14.71377 -14.63117 -14.35011 -14.07408 -14.01757 -13.68217 -13.59172 -13.29544 -13.24464 -12.90374 -12.83921 -12.45718 -12.14165 -12.10984 -12.09688 -11.99449 -11.73340 -11.39408 -11.09459 -10.97781 -10.92726 -10.71642 -10.55007 -10.50746 -10.44228 -10.08906 -9.81681 -9.67720 -9.65823 -9.63726 -9.45550 -8.92292 -8.63936 -8.60395 -6.96144 -5.96423 -3.31589 1.47555 2.12453 2.18893 3.21320 3.29407 3.45929 3.48543 3.50273 3.61473 3.95934 4.33384 4.44500 4.48782 4.54474 4.63441 4.74864 4.84659 4.96988 5.01632 5.11571 5.17611 5.19188 5.27174 5.29260 5.38530 5.43209 5.46168 5.56942 5.60714 5.63836 5.69014 5.75563 5.76630 5.89383 6.02955 6.08982 6.12635 6.23470 6.31763 6.35212 6.37985 6.46404 6.58007 6.61466 6.68040 6.69156 6.75543 6.83356 7.00844 7.45327 7.81047 7.95456 8.32008 8.49230 8.93448 9.70567 10.09529 11.19549 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002962 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.851860 B = 9451.932732 C =10855.718601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 H 0.085 0.915 4 N -0.719 5.719 5 C 0.597 3.403 6 O -0.560 6.560 7 C -0.291 4.291 8 C 0.085 3.915 9 N -0.292 5.292 10 N -0.361 5.361 11 C 0.164 3.836 12 C -0.172 4.172 13 C -0.177 4.177 14 C -0.169 4.169 15 C 0.126 3.874 16 C -0.115 4.115 17 H 0.079 0.921 18 C -0.102 4.102 19 C -0.135 4.135 20 C 0.147 3.853 21 N -0.605 5.605 22 C -0.257 4.257 23 H 0.085 0.915 24 C 0.022 3.978 25 N -0.907 5.907 26 Si 0.880 3.120 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.271 1.271 30 C 0.132 3.868 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.402 0.598 35 H 0.191 0.809 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.186 0.814 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.022 0.978 49 H 0.061 0.939 50 H 0.262 0.738 51 H 0.066 0.934 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 13.165 -14.957 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.103 0.897 4 N -0.370 5.370 5 C 0.384 3.616 6 O -0.439 6.439 7 C -0.306 4.306 8 C -0.103 4.103 9 N -0.111 5.111 10 N -0.139 5.139 11 C 0.043 3.957 12 C -0.190 4.190 13 C -0.214 4.214 14 C -0.206 4.206 15 C -0.026 4.026 16 C -0.135 4.135 17 H 0.097 0.903 18 C -0.140 4.140 19 C -0.174 4.174 20 C 0.021 3.979 21 N -0.328 5.328 22 C -0.386 4.386 23 H 0.103 0.897 24 C -0.176 4.176 25 N -0.550 5.550 26 Si 0.711 3.289 27 H -0.218 1.218 28 H -0.232 1.232 29 H -0.196 1.196 30 C 0.006 3.994 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.208 0.792 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.139 0.861 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.203 0.797 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.039 0.961 49 H 0.080 0.920 50 H 0.072 0.928 51 H 0.084 0.916 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.024 12.944 -16.025 20.600 hybrid contribution -0.949 -0.027 -0.147 0.961 sum -0.925 12.917 -16.172 20.718 Atomic orbital electron populations 1.22288 0.95719 1.02440 1.02046 1.20986 0.93953 0.96857 0.83596 0.89651 1.46033 1.66994 1.14469 1.09483 1.17203 0.76559 0.85713 0.82080 1.90722 1.52266 1.15598 1.85363 1.20313 1.19729 0.95221 0.95338 1.24232 0.95601 0.95442 0.95021 1.77198 1.24531 1.04694 1.04677 1.48508 1.48880 1.07000 1.09556 1.21366 0.95500 1.02644 0.76225 1.22572 0.93837 1.03491 0.99130 1.23117 0.99664 0.95046 1.03609 1.22975 1.03643 1.01994 0.92023 1.22905 0.94708 0.95243 0.89712 1.21972 1.01419 0.97414 0.92736 0.90258 1.21492 1.00331 0.97927 0.94276 1.22055 1.01121 0.97880 0.96389 1.20945 0.96538 0.91216 0.89207 1.44327 1.66003 1.23123 0.99388 1.18949 1.18664 0.92901 1.08052 0.89695 1.25283 0.97770 0.96313 0.98283 1.69834 1.32716 1.21488 1.30945 0.87023 0.85945 0.75672 0.80252 1.21786 1.23151 1.19628 1.21437 0.97047 0.90828 0.90083 0.92095 0.91357 0.92537 0.76165 0.79233 0.88885 0.88246 0.86147 0.88492 0.88426 0.88207 0.88412 0.79679 0.92836 0.92041 0.92618 0.91999 0.96055 0.92021 0.92761 0.91561 0.95100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 8.79 37.16 0.33 -2.14 16 2 C 0.15 2.37 2.41 -67.93 -0.16 2.21 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 4 N -0.72 -11.71 4.99 -54.88 -0.27 -11.98 16 5 C 0.60 9.78 7.78 -12.52 -0.10 9.68 16 6 O -0.56 -10.25 16.56 5.27 0.09 -10.16 16 7 C -0.29 -4.25 6.13 -105.07 -0.64 -4.90 16 8 C 0.09 1.26 11.50 -16.98 -0.20 1.06 16 9 N -0.29 -4.20 12.14 30.86 0.37 -3.83 16 10 N -0.36 -4.14 3.65 -60.80 -0.22 -4.36 16 11 C 0.16 1.23 6.77 -4.04 -0.03 1.21 16 12 C -0.17 -1.35 5.92 -90.62 -0.54 -1.89 16 13 C -0.18 -1.14 10.18 -26.73 -0.27 -1.41 16 14 C -0.17 -0.99 10.25 -26.74 -0.27 -1.26 16 15 C 0.13 1.50 11.25 -16.56 -0.19 1.31 16 16 C -0.11 -1.95 2.33 -90.50 -0.21 -2.16 16 17 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 18 C -0.10 -1.53 4.77 -26.53 -0.13 -1.66 16 19 C -0.14 -2.14 6.11 -26.45 -0.16 -2.30 16 20 C 0.15 2.81 6.50 -3.71 -0.02 2.79 16 21 N -0.61 -13.88 2.77 -172.32 -0.48 -14.36 16 22 C -0.26 -7.00 10.03 -15.06 -0.15 -7.15 16 23 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 24 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 25 N -0.91 -27.08 13.97 55.49 0.78 -26.30 16 26 Si 0.88 21.59 24.35 -169.99 -4.14 17.45 16 27 H -0.29 -6.48 6.62 56.52 0.37 -6.11 16 28 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 29 H -0.27 -6.64 6.64 56.52 0.38 -6.27 16 30 C 0.13 2.71 2.98 -3.71 -0.01 2.69 16 31 H 0.06 0.96 6.32 -51.93 -0.33 0.63 16 32 H 0.07 0.90 6.46 -51.93 -0.34 0.56 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 6.72 5.92 -40.82 -0.24 6.48 16 35 H 0.19 2.72 7.50 -52.49 -0.39 2.33 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.48 7.79 -51.93 -0.40 0.08 16 38 H 0.12 1.25 7.90 -51.93 -0.41 0.84 16 39 H 0.10 0.51 8.03 -51.93 -0.42 0.09 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.19 1.70 8.06 -52.48 -0.42 1.28 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.88 6.50 -51.93 -0.34 0.55 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.07 1.46 3.10 -51.93 -0.16 1.30 16 52 H 0.03 0.64 5.11 -51.93 -0.27 0.38 16 LS Contribution 403.73 15.07 6.08 6.08 Total: -1.00 -32.87 403.73 -9.00 -41.87 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.36 Total: 8.96 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.85 Total: -3.37 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.18 Total: -60.83 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.87 -9.00 -41.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.960 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds