Wall clock time and date at job start Wed Apr 1 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47205 * 2 1 4 4 N 1.46498 * 109.47207 * 239.99389 * 2 1 3 5 5 C 1.34774 * 119.99825 * 85.00753 * 4 2 1 6 6 O 1.21607 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.47432 * 120.00074 * 180.02562 * 5 4 2 8 8 C 1.41285 * 126.41222 * 359.68306 * 7 5 4 9 9 N 1.30450 * 108.02322 * 179.88316 * 8 7 5 10 10 N 1.39941 * 108.89377 * 0.38025 * 9 8 7 11 11 C 1.46503 * 125.75146 * 179.77560 * 10 9 8 12 12 C 1.53002 * 109.47108 * 304.97648 * 11 10 9 13 13 C 1.52999 * 117.49673 * 243.62257 * 12 11 10 14 14 C 1.52994 * 59.99879 * 252.51155 * 13 12 11 15 15 C 1.34258 * 108.49086 * 359.75678 * 10 9 8 16 16 C 1.53007 * 109.46910 * 119.99380 * 2 1 3 17 17 H 1.08995 * 109.52517 * 180.02562 * 16 2 1 18 18 C 1.53032 * 109.49786 * 300.16433 * 16 2 1 19 19 C 1.53358 * 109.60590 * 181.32218 * 18 16 2 20 20 C 1.53193 * 109.15016 * 298.71093 * 19 18 16 21 21 N 1.46928 * 108.89119 * 54.57631 * 20 19 18 22 22 C 1.36938 * 120.62664 * 126.34115 * 21 20 19 23 23 H 1.07999 * 120.00114 * 332.50326 * 22 21 20 24 24 C 1.38816 * 119.99995 * 152.51181 * 22 21 20 25 25 N 1.31612 * 120.00415 * 159.33584 * 24 22 21 26 26 Si 1.86806 * 119.99631 * 339.33505 * 24 22 21 27 27 H 1.48501 * 109.46946 * 92.98062 * 26 24 22 28 28 H 1.48496 * 109.46962 * 212.98533 * 26 24 22 29 29 H 1.48503 * 109.47163 * 332.98296 * 26 24 22 30 30 C 1.46924 * 118.74149 * 306.32206 * 21 20 19 31 31 H 1.09000 * 109.47205 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47286 * 300.00405 * 1 2 3 33 33 H 1.09002 * 109.46492 * 60.00419 * 1 2 3 34 34 H 0.96995 * 120.00216 * 264.99630 * 4 2 1 35 35 H 1.08001 * 125.99135 * 0.02562 * 8 7 5 36 36 H 1.09003 * 109.46777 * 64.97636 * 11 10 9 37 37 H 1.08997 * 109.46722 * 184.97561 * 11 10 9 38 38 H 1.08998 * 115.54622 * 29.32884 * 12 11 10 39 39 H 1.09001 * 117.50064 * 0.02562 * 13 12 11 40 40 H 1.08999 * 117.49701 * 145.01991 * 13 12 11 41 41 H 1.08997 * 117.50468 * 252.51098 * 14 13 12 42 42 H 1.09009 * 117.50039 * 107.49078 * 14 13 12 43 43 H 1.08005 * 126.28902 * 180.02562 * 15 10 9 44 44 H 1.09003 * 109.46430 * 301.33458 * 18 16 2 45 45 H 1.09007 * 109.46205 * 61.31183 * 18 16 2 46 46 H 1.09004 * 109.68392 * 178.74492 * 19 18 16 47 47 H 1.08999 * 109.47316 * 58.55281 * 19 18 16 48 48 H 1.08998 * 109.58670 * 294.72289 * 20 19 18 49 49 H 1.08995 * 109.58604 * 174.43380 * 20 19 18 50 50 H 0.97004 * 119.99909 * 179.97438 * 25 24 22 51 51 H 1.08995 * 109.58642 * 173.39531 * 30 21 20 52 52 H 1.09005 * 109.58500 * 293.82251 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3570 6 8 1.8577 1.1614 -2.4119 7 6 2.6382 -0.7136 -3.5609 8 6 3.0164 -2.0721 -3.6493 9 7 3.3904 -2.3079 -4.8766 10 7 3.2793 -1.1269 -5.6190 11 6 3.6084 -0.9739 -7.0384 12 6 5.0477 -1.4330 -7.2806 13 6 6.0514 -0.3847 -7.7648 14 6 5.5461 -1.4616 -8.7268 15 6 2.8200 -0.1577 -4.8113 16 6 2.0400 -0.7212 1.2494 17 1 3.1300 -0.7213 1.2505 18 6 1.5268 -0.0025 2.4992 19 6 2.0636 -0.7038 3.7530 20 6 1.5531 -2.1480 3.7784 21 7 1.9179 -2.8038 2.5152 22 6 2.6064 -3.9875 2.5171 23 1 3.2587 -4.2315 3.3426 24 6 2.4660 -4.8738 1.4580 25 7 3.3875 -5.7873 1.2377 26 14 0.9689 -4.7699 0.3455 27 1 1.2799 -3.9086 -0.8236 28 1 0.6064 -6.1310 -0.1248 29 1 -0.1695 -4.1876 1.1005 30 6 1.5297 -2.1656 1.2500 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 2.2491 -1.6318 -1.1524 35 1 2.9969 -2.7901 -2.8427 36 1 2.9280 -1.5803 -7.6364 37 1 3.5080 0.0732 -7.3238 38 1 5.4138 -2.2073 -6.6066 39 1 5.6865 0.6321 -7.9104 40 1 7.0783 -0.4692 -7.4092 41 1 6.2404 -2.2547 -9.0042 42 1 4.8485 -1.1535 -9.5058 43 1 2.6278 0.8681 -5.0890 44 1 1.8682 1.0327 2.4888 45 1 0.4371 -0.0254 2.5096 46 1 1.7170 -0.1797 4.6436 47 1 3.1534 -0.7034 3.7311 48 1 0.4690 -2.1504 3.8915 49 1 2.0088 -2.6819 4.6122 50 1 3.2891 -6.4069 0.4978 51 1 1.9719 -2.7098 0.4155 52 1 0.4436 -2.1695 1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025589139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:44 Heat of formation + Delta-G solvation = 63.422550 kcal Electronic energy + Delta-G solvation = -31074.295094 eV Core-core repulsion = 27075.917184 eV Total energy + Delta-G solvation = -3998.377910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.46739 -40.84603 -39.45257 -38.45729 -36.60244 -34.83391 -34.09400 -32.97934 -32.25755 -31.30344 -29.76263 -28.22780 -27.13496 -25.61596 -24.41999 -23.56216 -23.31380 -22.81064 -21.69312 -21.48947 -20.81274 -20.41007 -19.11707 -18.67147 -17.52015 -17.16676 -16.86553 -16.66261 -16.15746 -16.06502 -15.75770 -15.58637 -15.43449 -15.14339 -14.98671 -14.88102 -14.70181 -14.47968 -14.02049 -13.95306 -13.83442 -13.64217 -13.57279 -13.24999 -12.80596 -12.77570 -12.55987 -12.48584 -12.42859 -12.14079 -12.00704 -11.93385 -11.57968 -11.50530 -11.47447 -11.24058 -11.19867 -11.09440 -10.87773 -10.62500 -10.61453 -10.14837 -9.69694 -8.86703 -8.14085 -5.44932 0.49464 1.04538 1.25175 1.31519 1.42866 1.50480 2.29197 2.41560 2.42526 2.79353 3.06771 3.25779 3.36242 3.67648 3.75624 3.82956 3.90133 3.91972 3.95472 4.01743 4.05648 4.12886 4.22070 4.30263 4.37383 4.40965 4.47323 4.54350 4.58596 4.60784 4.64304 4.73518 4.74640 4.82262 4.91778 4.96451 5.02119 5.04615 5.12959 5.15154 5.19186 5.19768 5.26208 5.27909 5.31160 5.42213 5.57245 5.64170 5.84681 5.89932 6.15464 6.40854 6.55528 6.95447 7.23643 7.66041 8.06810 9.05752 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002962 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.851860 B = 9451.932732 C =10855.718601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.090 0.910 4 N -0.724 5.724 5 C 0.599 3.401 6 O -0.581 6.581 7 C -0.318 4.318 8 C 0.073 3.927 9 N -0.317 5.317 10 N -0.350 5.350 11 C 0.156 3.844 12 C -0.190 4.190 13 C -0.175 4.175 14 C -0.155 4.155 15 C 0.143 3.857 16 C -0.103 4.103 17 H 0.061 0.939 18 C -0.100 4.100 19 C -0.126 4.126 20 C 0.138 3.862 21 N -0.620 5.620 22 C -0.247 4.247 23 H 0.049 0.951 24 C -0.032 4.032 25 N -0.955 5.955 26 Si 0.939 3.061 27 H -0.262 1.262 28 H -0.317 1.317 29 H -0.265 1.265 30 C 0.130 3.870 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.398 0.602 35 H 0.183 0.817 36 H 0.104 0.896 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.219 0.781 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.047 0.953 48 H 0.035 0.965 49 H 0.050 0.950 50 H 0.261 0.739 51 H 0.046 0.954 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 16.476 -16.662 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.108 0.892 4 N -0.374 5.374 5 C 0.388 3.612 6 O -0.463 6.463 7 C -0.333 4.333 8 C -0.114 4.114 9 N -0.137 5.137 10 N -0.128 5.128 11 C 0.037 3.963 12 C -0.209 4.209 13 C -0.212 4.212 14 C -0.192 4.192 15 C -0.010 4.010 16 C -0.124 4.124 17 H 0.080 0.920 18 C -0.137 4.137 19 C -0.165 4.165 20 C 0.014 3.986 21 N -0.344 5.344 22 C -0.377 4.377 23 H 0.067 0.933 24 C -0.227 4.227 25 N -0.601 5.601 26 Si 0.768 3.232 27 H -0.188 1.188 28 H -0.246 1.246 29 H -0.190 1.190 30 C 0.006 3.994 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.234 0.766 35 H 0.200 0.800 36 H 0.122 0.878 37 H 0.154 0.846 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.235 0.765 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.066 0.934 48 H 0.053 0.947 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.064 0.936 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.632 16.290 -17.731 24.134 hybrid contribution -0.332 -1.050 0.400 1.171 sum -1.964 15.241 -17.331 23.162 Atomic orbital electron populations 1.22247 0.94576 1.01995 1.03076 1.20987 0.94731 0.96610 0.82692 0.89200 1.46123 1.67057 1.14293 1.09889 1.17379 0.76002 0.85444 0.82388 1.90696 1.53508 1.16332 1.85740 1.20307 1.21809 0.95266 0.95954 1.24187 0.96239 0.95775 0.95239 1.77139 1.25095 1.06605 1.04834 1.48829 1.47406 1.05917 1.10689 1.21805 0.95306 1.05178 0.74001 1.22432 0.94473 1.03804 1.00214 1.23209 0.98929 0.95824 1.03220 1.23073 1.03371 1.01505 0.91283 1.23364 0.92653 0.96276 0.88668 1.21809 1.00285 0.95449 0.94864 0.92032 1.21527 1.01157 0.98844 0.92203 1.21963 1.00245 0.95727 0.98558 1.21166 0.97331 0.92993 0.87149 1.44469 1.65970 1.22261 1.01719 1.18868 1.17732 0.94556 1.06543 0.93293 1.25851 1.00089 0.96385 1.00340 1.69968 1.34691 1.23146 1.32337 0.86046 0.82304 0.75271 0.79595 1.18822 1.24606 1.18982 1.21453 0.97126 0.92612 0.88248 0.93162 0.89151 0.92711 0.76636 0.80016 0.87810 0.84580 0.89456 0.86649 0.89217 0.88413 0.86269 0.76460 0.90078 0.90566 0.89149 0.93385 0.94655 0.93131 0.93039 0.93567 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 8.79 71.98 0.63 -3.69 16 2 C 0.15 4.56 2.41 45.00 0.11 4.67 16 3 H 0.09 2.63 7.58 -2.39 -0.02 2.61 16 4 N -0.72 -23.04 4.99 -445.78 -2.22 -25.27 16 5 C 0.60 19.06 7.78 86.67 0.67 19.74 16 6 O -0.58 -20.34 16.56 -4.05 -0.07 -20.40 16 7 C -0.32 -9.07 6.13 -20.15 -0.12 -9.20 16 8 C 0.07 2.19 11.50 85.65 0.99 3.18 16 9 N -0.32 -9.14 12.14 -56.28 -0.68 -9.82 16 10 N -0.35 -7.47 3.65 -346.29 -1.26 -8.73 16 11 C 0.16 1.95 6.77 86.38 0.58 2.53 16 12 C -0.19 -2.74 5.92 -10.79 -0.06 -2.81 16 13 C -0.17 -1.89 10.18 30.59 0.31 -1.58 16 14 C -0.15 -1.48 10.25 30.59 0.31 -1.16 16 15 C 0.14 3.12 11.25 84.28 0.95 4.06 16 16 C -0.10 -3.34 2.33 -10.72 -0.03 -3.37 16 17 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 18 C -0.10 -2.63 4.77 30.72 0.15 -2.48 16 19 C -0.13 -3.66 6.11 30.78 0.19 -3.47 16 20 C 0.14 5.13 6.50 86.36 0.56 5.69 16 21 N -0.62 -28.43 2.77 -699.09 -1.94 -30.37 16 22 C -0.25 -13.91 10.03 84.03 0.84 -13.06 16 23 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 24 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16 25 N -0.96 -59.59 13.97 21.65 0.30 -59.29 16 26 Si 0.94 45.56 24.35 68.60 1.67 47.23 16 27 H -0.26 -11.39 6.62 99.48 0.66 -10.73 16 28 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16 29 H -0.27 -12.47 6.64 99.48 0.66 -11.81 16 30 C 0.13 5.23 2.98 86.36 0.26 5.49 16 31 H 0.05 1.45 6.32 -2.39 -0.02 1.44 16 32 H 0.09 2.00 6.46 -2.39 -0.02 1.99 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.40 13.34 5.92 -92.71 -0.55 12.79 16 35 H 0.18 5.50 7.50 -2.91 -0.02 5.48 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.14 0.72 7.79 -2.39 -0.02 0.70 16 38 H 0.09 1.87 7.90 -2.39 -0.02 1.85 16 39 H 0.12 0.82 8.03 -2.39 -0.02 0.80 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.22 3.18 8.06 -2.91 -0.02 3.16 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.08 1.84 6.50 -2.38 -0.02 1.82 16 46 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 50 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 51 H 0.05 2.04 3.10 -2.39 -0.01 2.03 16 52 H 0.04 1.47 5.11 -2.38 -0.01 1.46 16 Total: -1.00 -74.45 403.73 2.87 -71.58 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.28 Total: 31.91 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.79 Total: 3.16 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -5.80 Total: -133.47 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.07 Total: -20.40 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.23 kcal Total: -74.45 2.87 -71.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025589139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.001 kcal (2) G-P(sol) polarization free energy of solvation -74.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds