Wall clock time and date at job start Wed Apr 1 2020 05:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47636 * 2 1 4 4 N 1.46505 * 109.46989 * 119.99710 * 2 1 3 5 5 C 1.34774 * 119.99817 * 275.00184 * 4 2 1 6 6 O 1.21630 * 120.00208 * 5.01729 * 5 4 2 7 7 C 1.47162 * 119.99569 * 185.01303 * 5 4 2 8 8 C 1.38102 * 126.93820 * 95.73001 * 7 5 4 9 9 C 1.39537 * 105.70386 * 179.90252 * 8 7 5 10 10 N 1.31065 * 107.60008 * 0.35749 * 9 8 7 11 11 N 1.28447 * 110.96589 * 359.77567 * 10 9 8 12 12 C 1.46507 * 125.19119 * 179.97438 * 11 10 9 13 13 C 1.51269 * 109.36888 * 180.17248 * 9 8 7 14 14 C 1.54383 * 105.27761 * 17.38841 * 13 9 8 15 15 C 1.50850 * 144.40844 * 0.89506 * 8 7 5 16 16 C 1.53006 * 109.47509 * 239.99717 * 2 1 3 17 17 H 1.09000 * 109.49317 * 300.06927 * 16 2 1 18 18 C 1.53038 * 109.49513 * 60.16216 * 16 2 1 19 19 C 1.53044 * 109.53654 * 181.31659 * 18 16 2 20 20 C 1.53192 * 109.31222 * 298.64030 * 19 18 16 21 21 N 1.46923 * 108.77805 * 54.63147 * 20 19 18 22 22 C 1.36936 * 120.62938 * 126.36993 * 21 20 19 23 23 H 1.07998 * 120.00372 * 208.47850 * 22 21 20 24 24 C 1.38813 * 119.99884 * 28.47469 * 22 21 20 25 25 N 1.31621 * 120.00189 * 18.68862 * 24 22 21 26 26 Si 1.86806 * 119.99955 * 198.69007 * 24 22 21 27 27 H 1.48498 * 109.46969 * 94.98798 * 26 24 22 28 28 H 1.48500 * 109.47084 * 214.98696 * 26 24 22 29 29 H 1.48500 * 109.46888 * 334.98603 * 26 24 22 30 30 C 1.46921 * 118.74034 * 306.39106 * 21 20 19 31 31 H 1.08991 * 109.47294 * 300.00668 * 1 2 3 32 32 H 1.09002 * 109.46407 * 60.00566 * 1 2 3 33 33 H 1.09004 * 109.47160 * 180.02562 * 1 2 3 34 34 H 0.96995 * 119.99898 * 94.99907 * 4 2 1 35 35 H 1.08999 * 109.46717 * 274.43967 * 12 11 10 36 36 H 1.09002 * 109.47201 * 34.44034 * 12 11 10 37 37 H 1.09003 * 109.46806 * 154.43935 * 12 11 10 38 38 H 1.09004 * 110.28380 * 136.33959 * 13 9 8 39 39 H 1.08997 * 110.28629 * 258.34141 * 13 9 8 40 40 H 1.08993 * 110.77895 * 91.96138 * 14 13 9 41 41 H 1.09001 * 110.77996 * 215.40011 * 14 13 9 42 42 H 1.09001 * 110.44767 * 43.28112 * 15 8 7 43 43 H 1.08998 * 110.17737 * 281.21228 * 15 8 7 44 44 H 1.08995 * 109.46323 * 301.33835 * 18 16 2 45 45 H 1.08997 * 109.45972 * 61.30225 * 18 16 2 46 46 H 1.08992 * 109.49877 * 178.68256 * 19 18 16 47 47 H 1.09008 * 109.51798 * 58.60471 * 19 18 16 48 48 H 1.08997 * 109.58211 * 294.84228 * 20 19 18 49 49 H 1.09003 * 109.70105 * 174.49041 * 20 19 18 50 50 H 0.96997 * 119.99847 * 179.97438 * 25 24 22 51 51 H 1.08997 * 109.59003 * 293.82188 * 30 21 20 52 52 H 1.09005 * 109.58922 * 173.39636 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.7725 1.1364 2.4360 7 6 2.7405 -0.6809 3.5294 8 6 4.0576 -0.6184 3.9397 9 6 4.1319 -1.4021 5.0919 10 7 2.9356 -1.8869 5.3192 11 7 2.1008 -1.4872 4.4285 12 6 0.6801 -1.8419 4.3832 13 6 5.5502 -1.3880 5.6177 14 6 6.2241 -0.1770 4.9375 15 6 5.4113 -0.0274 3.6331 16 6 2.0401 -0.7213 -1.2492 17 1 1.6760 -1.7487 -1.2502 18 6 1.5337 0.0020 -2.4992 19 6 2.0161 -0.7376 -3.7492 20 6 3.5477 -0.7382 -3.7780 21 7 4.0443 -1.3006 -2.5148 22 6 4.9301 -2.3449 -2.5164 23 1 4.9475 -3.0397 -1.6898 24 6 5.8058 -2.5104 -3.5807 25 7 6.0543 -1.5036 -4.3913 26 14 6.6318 -4.1621 -3.8624 27 1 5.8454 -4.9470 -4.8477 28 1 8.0051 -3.9462 -4.3845 29 1 6.7013 -4.9060 -2.5791 30 6 3.5720 -0.7217 -1.2497 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6317 1.1527 35 1 0.5592 -2.7916 3.8621 36 1 0.2959 -1.9334 5.3992 37 1 0.1282 -1.0646 3.8547 38 1 5.5506 -1.2618 6.7004 39 1 6.0634 -2.3102 5.3452 40 1 6.1305 0.7155 5.5561 41 1 7.2707 -0.3892 4.7188 42 1 5.3156 1.0249 3.3657 43 1 5.8886 -0.5807 2.8244 44 1 0.4440 0.0252 -2.4889 45 1 1.9184 1.0217 -2.5096 46 1 1.6356 -0.2354 -4.6386 47 1 1.6522 -1.7649 -3.7277 48 1 3.9114 0.2830 -3.8913 49 1 3.8994 -1.3459 -4.6118 50 1 6.6665 -1.6193 -5.1347 51 1 3.9377 0.3009 -1.1568 52 1 3.9376 -1.3199 -0.4150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025594911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:10 Heat of formation + Delta-G solvation = 60.412039 kcal Electronic energy + Delta-G solvation = -31681.441647 eV Core-core repulsion = 27682.933192 eV Total energy + Delta-G solvation = -3998.508455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.76057 -39.76507 -37.91484 -37.04296 -35.29945 -33.12197 -32.38232 -31.50222 -30.57904 -30.26774 -28.54961 -27.58179 -26.60418 -25.27279 -24.15206 -22.68128 -21.97014 -21.49010 -20.51098 -20.38181 -19.76093 -18.93750 -17.57519 -16.82485 -16.53342 -16.11748 -15.80506 -15.15308 -15.00172 -14.67954 -14.46900 -14.24695 -13.95638 -13.63005 -13.43500 -13.23674 -13.09611 -12.92022 -12.90481 -12.70543 -12.64773 -12.50729 -12.31217 -11.94634 -11.85855 -11.61313 -11.27079 -11.15083 -11.10994 -11.01392 -10.72540 -10.46733 -10.45638 -10.26086 -10.19157 -10.13555 -9.93348 -9.60848 -9.46975 -9.09098 -9.02453 -8.62875 -8.48323 -6.69252 -5.81724 -3.23996 1.59131 2.00845 2.51942 2.60234 3.17824 3.35198 3.42769 3.43842 3.76864 4.44605 4.49365 4.63385 4.71824 4.80337 4.90629 4.93586 5.02913 5.07043 5.15093 5.20057 5.31869 5.35620 5.49461 5.52506 5.54157 5.65517 5.69883 5.71004 5.74654 5.80887 5.88899 5.94246 6.00965 6.01878 6.05223 6.12108 6.23650 6.29710 6.35889 6.41820 6.46066 6.57918 6.66350 6.70921 6.76520 6.82903 6.94098 7.35496 7.41816 7.62800 7.77147 7.97994 8.06382 8.42157 9.18457 9.82092 10.39440 11.26709 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009546 B = 0.003501 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.312413 B = 7995.914020 C = 9873.957859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.704 5.704 5 C 0.595 3.405 6 O -0.525 6.525 7 C -0.012 4.012 8 C -0.175 4.175 9 C 0.006 3.994 10 N -0.269 5.269 11 N -0.277 5.277 12 C 0.092 3.908 13 C -0.025 4.025 14 C -0.115 4.115 15 C -0.048 4.048 16 C -0.111 4.111 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.590 5.590 22 C -0.255 4.255 23 H 0.064 0.936 24 C 0.005 3.995 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 C 0.156 3.844 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.403 0.597 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.018 0.982 49 H 0.083 0.917 50 H 0.254 0.746 51 H 0.017 0.983 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 1.061 15.540 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.106 0.894 4 N -0.354 5.354 5 C 0.377 3.623 6 O -0.400 6.400 7 C -0.139 4.139 8 C -0.186 4.186 9 C -0.153 4.153 10 N -0.099 5.099 11 N -0.065 5.065 12 C -0.049 4.049 13 C -0.064 4.064 14 C -0.153 4.153 15 C -0.086 4.086 16 C -0.132 4.132 17 H 0.090 0.910 18 C -0.139 4.139 19 C -0.181 4.181 20 C 0.044 3.956 21 N -0.312 5.312 22 C -0.384 4.384 23 H 0.082 0.918 24 C -0.194 4.194 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 C 0.029 3.971 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.036 0.964 49 H 0.101 0.899 50 H 0.064 0.936 51 H 0.035 0.965 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.771 1.187 16.153 18.916 hybrid contribution 0.767 -0.880 -0.834 1.434 sum -9.004 0.307 15.320 17.772 Atomic orbital electron populations 1.22205 0.95465 1.01937 1.02387 1.21159 0.93648 0.97560 0.83346 0.89406 1.46136 1.65744 1.14206 1.09332 1.16991 0.77748 0.85708 0.81841 1.90831 1.48174 1.16860 1.84148 1.20515 0.92997 1.03285 0.97124 1.21156 0.93551 1.04613 0.99278 1.22754 0.94227 1.00109 0.98199 1.72627 1.00082 1.22382 1.14844 1.45649 1.09242 1.34024 1.17584 1.22138 0.74589 1.02752 1.05390 1.20419 0.86118 0.99582 1.00321 1.22379 0.99354 0.97711 0.95820 1.20419 0.88802 1.01077 0.98299 1.21988 0.99728 0.99172 0.92303 0.90997 1.21439 0.98749 0.99064 0.94601 1.22168 1.00828 0.99347 0.95739 1.20761 0.87519 0.97216 0.90111 1.44024 1.49909 1.37899 0.99405 1.19149 1.11140 1.01764 1.06384 0.91830 1.25025 0.96999 0.97274 1.00074 1.70061 1.37048 1.28669 1.18528 0.86323 0.78582 0.84079 0.78102 1.21484 1.21752 1.20390 1.20858 0.89723 0.96421 0.90124 0.92589 0.91017 0.92615 0.76171 0.89519 0.88403 0.88887 0.90423 0.89610 0.90728 0.89663 0.90613 0.89643 0.93089 0.92512 0.93190 0.92774 0.96436 0.89890 0.93638 0.96506 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.14 37.16 0.34 -1.53 16 2 C 0.15 2.02 2.12 -67.93 -0.14 1.87 16 3 H 0.09 1.37 7.65 -51.93 -0.40 0.97 16 4 N -0.70 -9.29 4.47 -54.96 -0.25 -9.54 16 5 C 0.59 8.78 6.97 -12.64 -0.09 8.69 16 6 O -0.53 -9.30 16.78 5.25 0.09 -9.22 16 7 C -0.01 -0.17 6.71 -82.14 -0.55 -0.72 16 8 C -0.18 -2.48 7.02 -104.11 -0.73 -3.21 16 9 C 0.01 0.09 8.13 -82.16 -0.67 -0.58 16 10 N -0.27 -3.76 11.91 33.78 0.40 -3.36 16 11 N -0.28 -3.54 3.75 -63.94 -0.24 -3.78 16 12 C 0.09 0.76 11.21 59.85 0.67 1.43 16 13 C -0.03 -0.25 6.76 -26.88 -0.18 -0.43 16 14 C -0.11 -1.03 7.07 -25.26 -0.18 -1.21 16 15 C -0.05 -0.57 6.75 -27.07 -0.18 -0.75 16 16 C -0.11 -1.75 1.97 -90.50 -0.18 -1.93 16 17 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 18 C -0.10 -1.57 4.86 -26.69 -0.13 -1.70 16 19 C -0.14 -2.57 6.08 -26.61 -0.16 -2.74 16 20 C 0.17 3.94 5.32 -3.71 -0.02 3.92 16 21 N -0.59 -14.29 2.99 -172.33 -0.52 -14.81 16 22 C -0.25 -6.82 9.57 -15.06 -0.14 -6.96 16 23 H 0.06 1.68 7.90 -52.49 -0.41 1.26 16 24 C 0.01 0.15 4.86 -17.43 -0.08 0.06 16 25 N -0.90 -25.77 11.33 55.49 0.63 -25.15 16 26 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 C 0.16 3.11 5.55 -3.71 -0.02 3.09 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.07 0.78 6.41 -51.93 -0.33 0.45 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.40 4.95 8.40 -40.82 -0.34 4.61 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.73 7.67 -51.93 -0.40 0.33 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.68 6.36 -51.93 -0.33 0.34 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 2.17 6.14 -51.93 -0.32 1.85 16 50 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.05 1.01 7.44 -51.93 -0.39 0.62 16 LS Contribution 408.75 15.07 6.16 6.16 Total: -1.00 -33.05 408.75 -10.02 -43.07 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.82 Total: 2.99 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.45 Total: -2.69 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.03 Total: -56.63 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.05 -10.02 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025594911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.483 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds