Wall clock time and date at job start Wed Apr 1 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 N 1.46503 * 109.46812 * 240.00061 * 2 1 3 5 5 C 1.34781 * 119.99574 * 85.00212 * 4 2 1 6 6 O 1.21625 * 119.99992 * 354.97203 * 5 4 2 7 7 C 1.47161 * 119.99751 * 174.97283 * 5 4 2 8 8 C 1.38090 * 126.93992 * 98.38746 * 7 5 4 9 9 C 1.39533 * 105.70813 * 179.97438 * 8 7 5 10 10 N 1.31065 * 107.59698 * 0.02562 * 9 8 7 11 11 N 1.28441 * 110.97231 * 359.72295 * 10 9 8 12 12 C 1.46495 * 125.20284 * 180.29856 * 11 10 9 13 13 C 1.51272 * 109.37634 * 180.02562 * 9 8 7 14 14 C 1.54382 * 105.27478 * 342.86922 * 13 9 8 15 15 C 1.50858 * 144.41335 * 359.92767 * 8 7 5 16 16 C 1.52998 * 109.47161 * 120.00216 * 2 1 3 17 17 H 1.09006 * 109.49869 * 59.93330 * 16 2 1 18 18 C 1.53042 * 109.52319 * 299.85555 * 16 2 1 19 19 C 1.53048 * 109.53588 * 178.66889 * 18 16 2 20 20 C 1.52755 * 109.38543 * 61.23605 * 19 18 16 21 21 N 1.46928 * 109.00980 * 305.59260 * 20 19 18 22 22 C 1.36939 * 120.62812 * 233.58330 * 21 20 19 23 23 H 1.08000 * 120.00096 * 146.46552 * 22 21 20 24 24 C 1.38813 * 119.99721 * 326.46725 * 22 21 20 25 25 N 1.31618 * 120.00167 * 335.55801 * 24 22 21 26 26 Si 1.86806 * 119.99971 * 155.28754 * 24 22 21 27 27 H 1.48507 * 109.47056 * 59.99360 * 26 24 22 28 28 H 1.48492 * 109.47281 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47055 * 299.99856 * 26 24 22 30 30 C 1.46919 * 118.74033 * 53.30462 * 21 20 19 31 31 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46814 * 299.99416 * 1 2 3 33 33 H 1.08999 * 109.46890 * 59.99518 * 1 2 3 34 34 H 0.96997 * 120.00013 * 264.99891 * 4 2 1 35 35 H 1.09005 * 109.47162 * 274.71336 * 12 11 10 36 36 H 1.09000 * 109.47448 * 34.71308 * 12 11 10 37 37 H 1.09007 * 109.47072 * 154.71513 * 12 11 10 38 38 H 1.08994 * 110.28527 * 223.92044 * 13 9 8 39 39 H 1.09002 * 110.36321 * 101.85761 * 13 9 8 40 40 H 1.09003 * 110.78120 * 268.03702 * 14 13 9 41 41 H 1.08996 * 110.78249 * 144.59996 * 14 13 9 42 42 H 1.09003 * 110.29944 * 316.02885 * 15 8 7 43 43 H 1.08996 * 110.30019 * 78.07987 * 15 8 7 44 44 H 1.08998 * 109.45918 * 298.68131 * 18 16 2 45 45 H 1.09000 * 109.46250 * 58.65027 * 18 16 2 46 46 H 1.09001 * 109.49262 * 181.31708 * 19 18 16 47 47 H 1.09000 * 109.49300 * 301.37565 * 19 18 16 48 48 H 1.08998 * 109.51278 * 185.70577 * 20 19 18 49 49 H 1.09006 * 109.43305 * 65.42295 * 20 19 18 50 50 H 0.97002 * 119.99740 * 357.58213 * 25 24 22 51 51 H 1.09007 * 109.58961 * 66.43579 * 30 21 20 52 52 H 1.09000 * 109.58885 * 186.85820 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0181 -2.3572 6 8 1.7725 1.1363 -2.4360 7 6 2.7408 -0.6808 -3.5294 8 6 2.0658 -1.2621 -4.5845 9 6 3.0529 -1.7522 -5.4403 10 7 4.2161 -1.4689 -4.9070 11 7 4.0717 -0.8403 -3.7962 12 6 5.1662 -0.3691 -2.9441 13 6 2.3994 -2.4110 -6.6350 14 6 0.9355 -2.6593 -6.2123 15 6 0.7003 -1.5629 -5.1508 16 6 2.0401 -0.7213 1.2492 17 1 1.6760 -1.7487 1.2502 18 6 1.5336 0.0013 2.4996 19 6 2.0160 -0.7390 3.7492 20 6 3.5433 -0.7433 3.7781 21 7 4.0443 -1.3013 2.5145 22 6 4.9301 -2.3456 2.5157 23 1 4.8958 -3.0837 1.7280 24 6 5.8722 -2.4554 3.5293 25 7 6.2534 -1.3843 4.1923 26 14 6.5932 -4.1247 3.9574 27 1 7.2797 -4.6874 2.7668 28 1 7.5698 -3.9726 5.0656 29 1 5.5036 -5.0410 4.3795 30 6 3.5720 -0.7217 1.2498 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2490 -1.6318 -1.1527 35 1 5.4857 -1.1754 -2.2838 36 1 6.0037 -0.0568 -3.5678 37 1 4.8234 0.4757 -2.3464 38 1 2.8926 -3.3561 -6.8620 39 1 2.4358 -1.7490 -7.5002 40 1 0.8222 -3.6513 -5.7749 41 1 0.2612 -2.5294 -7.0588 42 1 0.0384 -1.9308 -4.3668 43 1 0.2781 -0.6710 -5.6138 44 1 1.9183 1.0210 2.5106 45 1 0.4439 0.0245 2.4893 46 1 1.6355 -0.2373 4.6389 47 1 1.6516 -1.7661 3.7269 48 1 3.8900 -1.3553 4.6107 49 1 3.9067 0.2776 3.8961 50 1 5.9025 -0.5132 3.9495 51 1 3.9377 0.3010 1.1574 52 1 3.9376 -1.3194 0.4149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025594912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:16 Heat of formation + Delta-G solvation = 54.795774 kcal Electronic energy + Delta-G solvation = -31692.701939 eV Core-core repulsion = 27693.949944 eV Total energy + Delta-G solvation = -3998.751995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.78055 -39.82574 -38.07567 -37.12481 -35.47729 -33.30831 -32.36346 -31.53643 -30.55752 -30.38038 -28.56214 -27.66448 -26.57295 -25.21462 -24.10608 -22.72286 -22.15937 -21.54595 -20.55972 -20.40872 -19.83248 -19.01900 -17.60611 -17.31273 -16.75308 -16.07991 -15.85364 -15.24227 -14.80611 -14.77220 -14.42153 -14.21458 -13.94830 -13.73732 -13.69203 -13.45566 -13.11938 -12.97381 -12.90992 -12.87698 -12.73095 -12.56669 -12.40903 -12.04495 -11.93772 -11.68813 -11.41218 -11.22766 -11.21161 -11.04634 -10.74060 -10.48463 -10.41965 -10.31227 -10.25050 -10.10816 -9.96547 -9.82231 -9.35214 -9.10560 -9.08804 -8.67815 -8.39615 -6.88413 -6.16069 -3.35593 1.56760 2.00920 2.48065 2.64087 3.12597 3.43468 3.46860 3.64864 3.72471 4.44942 4.50929 4.61167 4.70073 4.78378 4.83035 4.97136 5.03119 5.06580 5.12892 5.23266 5.25924 5.32808 5.40350 5.43872 5.45199 5.51934 5.54364 5.60782 5.64594 5.73949 5.75576 5.84873 5.88993 5.90285 5.96257 5.98900 6.11372 6.13163 6.26865 6.35184 6.38316 6.42307 6.45951 6.61545 6.64736 6.70926 6.75134 7.01713 7.12780 7.37493 7.97812 7.98595 8.02580 8.53054 9.05721 9.77536 10.25434 11.13930 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.003154 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.161578 B = 8876.110385 C =10308.827725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.087 0.913 4 N -0.705 5.705 5 C 0.595 3.405 6 O -0.525 6.525 7 C -0.010 4.010 8 C -0.186 4.186 9 C 0.003 3.997 10 N -0.265 5.265 11 N -0.268 5.268 12 C 0.088 3.912 13 C -0.025 4.025 14 C -0.115 4.115 15 C -0.042 4.042 16 C -0.112 4.112 17 H 0.073 0.927 18 C -0.101 4.101 19 C -0.137 4.137 20 C 0.152 3.848 21 N -0.596 5.596 22 C -0.358 4.358 23 H 0.050 0.950 24 C -0.018 4.018 25 N -0.910 5.910 26 Si 1.066 2.934 27 H -0.292 1.292 28 H -0.285 1.285 29 H -0.292 1.292 30 C 0.158 3.842 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.404 0.596 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.016 0.984 50 H 0.270 0.730 51 H 0.014 0.986 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 -0.109 -15.962 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.105 0.895 4 N -0.356 5.356 5 C 0.377 3.623 6 O -0.399 6.399 7 C -0.138 4.138 8 C -0.197 4.197 9 C -0.156 4.156 10 N -0.096 5.096 11 N -0.056 5.056 12 C -0.052 4.052 13 C -0.064 4.064 14 C -0.153 4.153 15 C -0.080 4.080 16 C -0.133 4.133 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.176 4.176 20 C 0.026 3.974 21 N -0.320 5.320 22 C -0.487 4.487 23 H 0.068 0.932 24 C -0.222 4.222 25 N -0.549 5.549 26 Si 0.896 3.104 27 H -0.219 1.219 28 H -0.210 1.210 29 H -0.220 1.220 30 C 0.031 3.969 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.239 0.761 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.034 0.966 50 H 0.081 0.919 51 H 0.032 0.968 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.452 -0.104 -15.003 17.733 hybrid contribution -1.591 0.502 -0.768 1.837 sum -11.043 0.399 -15.771 19.257 Atomic orbital electron populations 1.22205 0.95304 1.02111 1.02420 1.21138 0.93943 0.97281 0.83249 0.89543 1.46139 1.66053 1.14366 1.09035 1.17001 0.78596 0.85359 0.81335 1.90829 1.49248 1.16665 1.83171 1.20501 0.85439 1.08749 0.99100 1.21090 0.98429 1.04970 0.95236 1.22700 0.88779 1.04268 0.99841 1.72665 1.25158 1.13584 0.98177 1.45751 1.04529 1.39786 1.15537 1.22256 0.87847 1.01518 0.93609 1.20387 0.93586 0.99864 0.92570 1.22380 0.95291 0.99072 0.98561 1.20346 0.91539 0.98768 0.97372 1.21982 0.99487 0.99381 0.92410 0.90851 1.21435 0.99110 0.98926 0.94399 1.21990 0.99673 0.99822 0.96110 1.20839 0.89756 0.96623 0.90212 1.44026 1.50201 1.38697 0.99049 1.19841 1.12128 1.02062 1.14650 0.93179 1.25952 0.94406 1.04204 0.97598 1.70791 1.40131 0.99016 1.44952 0.83503 0.76033 0.74635 0.76270 1.21924 1.21041 1.21957 1.20862 0.89860 0.95974 0.90159 0.92510 0.91151 0.92340 0.76094 0.88814 0.88222 0.88678 0.90294 0.89823 0.90581 0.89882 0.90938 0.90266 0.92518 0.92705 0.92921 0.92399 0.91064 0.96577 0.91942 0.96811 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.14 37.16 0.34 -1.61 16 2 C 0.15 2.03 2.12 -67.92 -0.14 1.88 16 3 H 0.09 1.31 7.65 -51.93 -0.40 0.92 16 4 N -0.71 -9.40 4.47 -54.96 -0.25 -9.64 16 5 C 0.59 8.84 6.97 -12.64 -0.09 8.75 16 6 O -0.52 -9.32 16.78 5.26 0.09 -9.23 16 7 C -0.01 -0.14 6.71 -82.14 -0.55 -0.70 16 8 C -0.19 -2.46 7.02 -104.12 -0.73 -3.19 16 9 C 0.00 0.04 8.13 -82.16 -0.67 -0.63 16 10 N -0.27 -3.89 11.91 33.78 0.40 -3.48 16 11 N -0.27 -3.76 3.75 -63.95 -0.24 -4.00 16 12 C 0.09 1.00 11.21 59.84 0.67 1.67 16 13 C -0.03 -0.22 6.76 -26.88 -0.18 -0.40 16 14 C -0.12 -0.82 7.07 -25.27 -0.18 -1.00 16 15 C -0.04 -0.41 6.76 -27.07 -0.18 -0.59 16 16 C -0.11 -1.74 1.97 -90.50 -0.18 -1.92 16 17 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 18 C -0.10 -1.53 4.86 -26.68 -0.13 -1.66 16 19 C -0.14 -2.41 6.06 -26.83 -0.16 -2.57 16 20 C 0.15 3.39 4.72 -3.93 -0.02 3.37 16 21 N -0.60 -14.14 2.77 -172.59 -0.48 -14.62 16 22 C -0.36 -9.57 9.43 -15.06 -0.14 -9.72 16 23 H 0.05 1.35 7.94 -52.49 -0.42 0.93 16 24 C -0.02 -0.50 4.66 -17.43 -0.08 -0.58 16 25 N -0.91 -26.63 12.73 55.49 0.71 -25.92 16 26 Si 1.07 24.60 29.99 -169.99 -5.10 19.50 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 30 C 0.16 3.07 5.56 -3.72 -0.02 3.05 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.78 6.41 -51.93 -0.33 0.45 16 33 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.40 5.07 8.40 -40.82 -0.34 4.73 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.08 7.67 -51.92 -0.40 0.68 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.71 6.37 -51.93 -0.33 0.38 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.07 1.79 6.72 -51.93 -0.35 1.44 16 49 H 0.02 0.37 7.84 -51.93 -0.41 -0.03 16 50 H 0.27 7.96 6.76 -40.82 -0.28 7.68 16 51 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 52 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 LS Contribution 408.14 15.07 6.15 6.15 Total: -1.00 -33.05 408.14 -9.93 -42.98 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -8.77 Total: 4.11 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.45 Total: -5.84 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.14 Total: -57.67 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.50 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.05 -9.93 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025594912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.781 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds