Wall clock time and date at job start Wed Apr 1 2020 05:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 N 1.46503 * 109.46812 * 240.00061 * 2 1 3 5 5 C 1.34781 * 119.99574 * 85.00212 * 4 2 1 6 6 O 1.21625 * 119.99992 * 354.97203 * 5 4 2 7 7 C 1.47161 * 119.99751 * 174.97283 * 5 4 2 8 8 C 1.38090 * 126.93992 * 98.38746 * 7 5 4 9 9 C 1.39533 * 105.70813 * 179.97438 * 8 7 5 10 10 N 1.31065 * 107.59698 * 0.02562 * 9 8 7 11 11 N 1.28441 * 110.97231 * 359.72295 * 10 9 8 12 12 C 1.46495 * 125.20284 * 180.29856 * 11 10 9 13 13 C 1.51272 * 109.37634 * 180.02562 * 9 8 7 14 14 C 1.54382 * 105.27478 * 342.86922 * 13 9 8 15 15 C 1.50858 * 144.41335 * 359.92767 * 8 7 5 16 16 C 1.52998 * 109.47161 * 120.00216 * 2 1 3 17 17 H 1.09006 * 109.49869 * 59.93330 * 16 2 1 18 18 C 1.53042 * 109.52319 * 299.85555 * 16 2 1 19 19 C 1.53048 * 109.53588 * 178.66889 * 18 16 2 20 20 C 1.52755 * 109.38543 * 61.23605 * 19 18 16 21 21 N 1.46928 * 109.00980 * 305.59260 * 20 19 18 22 22 C 1.36939 * 120.62812 * 233.58330 * 21 20 19 23 23 H 1.08000 * 120.00096 * 146.46552 * 22 21 20 24 24 C 1.38813 * 119.99721 * 326.46725 * 22 21 20 25 25 N 1.31618 * 120.00167 * 335.55801 * 24 22 21 26 26 Si 1.86806 * 119.99971 * 155.28754 * 24 22 21 27 27 H 1.48507 * 109.47056 * 59.99360 * 26 24 22 28 28 H 1.48492 * 109.47281 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47055 * 299.99856 * 26 24 22 30 30 C 1.46919 * 118.74033 * 53.30462 * 21 20 19 31 31 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46814 * 299.99416 * 1 2 3 33 33 H 1.08999 * 109.46890 * 59.99518 * 1 2 3 34 34 H 0.96997 * 120.00013 * 264.99891 * 4 2 1 35 35 H 1.09005 * 109.47162 * 274.71336 * 12 11 10 36 36 H 1.09000 * 109.47448 * 34.71308 * 12 11 10 37 37 H 1.09007 * 109.47072 * 154.71513 * 12 11 10 38 38 H 1.08994 * 110.28527 * 223.92044 * 13 9 8 39 39 H 1.09002 * 110.36321 * 101.85761 * 13 9 8 40 40 H 1.09003 * 110.78120 * 268.03702 * 14 13 9 41 41 H 1.08996 * 110.78249 * 144.59996 * 14 13 9 42 42 H 1.09003 * 110.29944 * 316.02885 * 15 8 7 43 43 H 1.08996 * 110.30019 * 78.07987 * 15 8 7 44 44 H 1.08998 * 109.45918 * 298.68131 * 18 16 2 45 45 H 1.09000 * 109.46250 * 58.65027 * 18 16 2 46 46 H 1.09001 * 109.49262 * 181.31708 * 19 18 16 47 47 H 1.09000 * 109.49300 * 301.37565 * 19 18 16 48 48 H 1.08998 * 109.51278 * 185.70577 * 20 19 18 49 49 H 1.09006 * 109.43305 * 65.42295 * 20 19 18 50 50 H 0.97002 * 119.99740 * 357.58213 * 25 24 22 51 51 H 1.09007 * 109.58961 * 66.43579 * 30 21 20 52 52 H 1.09000 * 109.58885 * 186.85820 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0181 -2.3572 6 8 1.7725 1.1363 -2.4360 7 6 2.7408 -0.6808 -3.5294 8 6 2.0658 -1.2621 -4.5845 9 6 3.0529 -1.7522 -5.4403 10 7 4.2161 -1.4689 -4.9070 11 7 4.0717 -0.8403 -3.7962 12 6 5.1662 -0.3691 -2.9441 13 6 2.3994 -2.4110 -6.6350 14 6 0.9355 -2.6593 -6.2123 15 6 0.7003 -1.5629 -5.1508 16 6 2.0401 -0.7213 1.2492 17 1 1.6760 -1.7487 1.2502 18 6 1.5336 0.0013 2.4996 19 6 2.0160 -0.7390 3.7492 20 6 3.5433 -0.7433 3.7781 21 7 4.0443 -1.3013 2.5145 22 6 4.9301 -2.3456 2.5157 23 1 4.8958 -3.0837 1.7280 24 6 5.8722 -2.4554 3.5293 25 7 6.2534 -1.3843 4.1923 26 14 6.5932 -4.1247 3.9574 27 1 7.2797 -4.6874 2.7668 28 1 7.5698 -3.9726 5.0656 29 1 5.5036 -5.0410 4.3795 30 6 3.5720 -0.7217 1.2498 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2490 -1.6318 -1.1527 35 1 5.4857 -1.1754 -2.2838 36 1 6.0037 -0.0568 -3.5678 37 1 4.8234 0.4757 -2.3464 38 1 2.8926 -3.3561 -6.8620 39 1 2.4358 -1.7490 -7.5002 40 1 0.8222 -3.6513 -5.7749 41 1 0.2612 -2.5294 -7.0588 42 1 0.0384 -1.9308 -4.3668 43 1 0.2781 -0.6710 -5.6138 44 1 1.9183 1.0210 2.5106 45 1 0.4439 0.0245 2.4893 46 1 1.6355 -0.2373 4.6389 47 1 1.6516 -1.7661 3.7269 48 1 3.8900 -1.3553 4.6107 49 1 3.9067 0.2776 3.8961 50 1 5.9025 -0.5132 3.9495 51 1 3.9377 0.3010 1.1574 52 1 3.9376 -1.3194 0.4149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025594912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:14 Heat of formation + Delta-G solvation = 35.127221 kcal Electronic energy + Delta-G solvation = -31693.554831 eV Core-core repulsion = 27693.949944 eV Total energy + Delta-G solvation = -3999.604887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.77141 -41.05720 -39.55298 -37.91078 -36.95784 -34.92163 -33.38180 -32.76439 -32.28090 -31.50948 -29.90866 -28.46775 -27.45481 -27.02433 -25.40260 -24.00598 -23.74012 -22.47074 -21.80789 -21.37800 -21.18019 -20.26935 -19.35292 -18.54249 -17.80895 -17.18579 -16.91286 -16.33632 -16.16072 -15.97037 -15.80002 -15.53765 -15.45443 -15.37704 -14.95039 -14.80574 -14.27878 -14.03886 -13.95020 -13.87497 -13.74311 -13.72068 -13.56966 -13.47003 -12.99834 -12.75772 -12.71761 -12.62551 -12.37611 -12.05217 -11.96063 -11.91086 -11.82032 -11.77297 -11.65471 -11.57941 -11.43812 -11.24098 -11.08332 -10.48294 -10.27643 -10.14330 -9.61158 -8.89293 -8.27681 -5.47728 0.51187 0.93810 1.51951 1.56280 1.57360 1.63199 1.81939 2.02167 2.61838 2.87046 3.20155 3.36689 3.45689 3.77225 3.84143 3.86660 3.89666 3.93742 4.10438 4.18625 4.20021 4.21781 4.27023 4.32665 4.36680 4.40520 4.49945 4.61133 4.66689 4.72056 4.73869 4.82173 4.83367 4.84789 4.92143 4.98772 5.01131 5.04973 5.08809 5.15834 5.17065 5.20964 5.23275 5.36097 5.38011 5.38678 5.48134 5.53861 5.74460 5.85498 6.23284 6.38262 6.86402 6.98252 7.06340 7.75426 8.23351 8.97150 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.003154 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.161578 B = 8876.110385 C =10308.827725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 H 0.072 0.928 4 N -0.696 5.696 5 C 0.603 3.397 6 O -0.558 6.558 7 C -0.035 4.035 8 C -0.195 4.195 9 C -0.007 4.007 10 N -0.291 5.291 11 N -0.276 5.276 12 C 0.085 3.915 13 C -0.026 4.026 14 C -0.103 4.103 15 C -0.046 4.046 16 C -0.095 4.095 17 H 0.076 0.924 18 C -0.097 4.097 19 C -0.126 4.126 20 C 0.155 3.845 21 N -0.614 5.614 22 C -0.359 4.359 23 H 0.047 0.953 24 C -0.069 4.069 25 N -0.940 5.940 26 Si 1.113 2.887 27 H -0.276 1.276 28 H -0.293 1.293 29 H -0.278 1.278 30 C 0.158 3.842 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.409 0.591 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.035 0.965 49 H 0.000 1.000 50 H 0.254 0.746 51 H 0.001 0.999 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.069 -1.426 -17.402 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 H 0.090 0.910 4 N -0.346 5.346 5 C 0.386 3.614 6 O -0.435 6.435 7 C -0.162 4.162 8 C -0.206 4.206 9 C -0.166 4.166 10 N -0.122 5.122 11 N -0.065 5.065 12 C -0.054 4.054 13 C -0.065 4.065 14 C -0.141 4.141 15 C -0.084 4.084 16 C -0.115 4.115 17 H 0.094 0.906 18 C -0.135 4.135 19 C -0.165 4.165 20 C 0.029 3.971 21 N -0.338 5.338 22 C -0.488 4.488 23 H 0.064 0.936 24 C -0.267 4.267 25 N -0.580 5.580 26 Si 0.938 3.062 27 H -0.202 1.202 28 H -0.219 1.219 29 H -0.204 1.204 30 C 0.032 3.968 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.245 0.755 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.094 0.906 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.018 0.982 50 H 0.064 0.936 51 H 0.019 0.981 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.955 -1.431 -16.459 20.393 hybrid contribution -0.796 0.950 -0.370 1.293 sum -12.750 -0.482 -16.829 21.119 Atomic orbital electron populations 1.22143 0.93100 1.03095 1.02892 1.21033 0.95460 0.96076 0.82298 0.90986 1.46079 1.65448 1.14475 1.08637 1.17018 0.77967 0.84794 0.81634 1.90805 1.50877 1.18017 1.83767 1.20614 0.86024 1.09930 0.99641 1.21710 1.00367 1.03960 0.94574 1.23555 0.88187 1.03786 1.01070 1.72622 1.26425 1.14485 0.98680 1.45921 1.04739 1.40091 1.15710 1.22342 0.88023 1.01297 0.93787 1.20638 0.94183 1.00316 0.91382 1.22412 0.94594 0.98383 0.98683 1.20543 0.89709 0.99949 0.98185 1.21754 0.96025 0.99951 0.93790 0.90600 1.21447 1.01292 0.98184 0.92566 1.21853 0.95543 1.00534 0.98559 1.20739 0.93162 0.94643 0.88550 1.44262 1.50230 1.38572 1.00783 1.20089 1.12071 1.02517 1.14168 0.93570 1.27248 0.95121 1.06383 0.97935 1.70915 1.41868 0.98917 1.46339 0.82870 0.75701 0.71356 0.76276 1.20166 1.21920 1.20401 1.20949 0.92786 0.94728 0.88288 0.91223 0.89583 0.92977 0.75517 0.88849 0.86658 0.89124 0.89149 0.88403 0.89879 0.86949 0.90397 0.89761 0.92663 0.88969 0.90601 0.92551 0.94620 0.98237 0.93630 0.98076 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.14 71.99 0.66 -2.60 16 2 C 0.16 4.04 2.12 44.99 0.10 4.14 16 3 H 0.07 2.14 7.65 -2.39 -0.02 2.12 16 4 N -0.70 -18.13 4.47 -446.04 -1.99 -20.12 16 5 C 0.60 17.91 6.97 86.59 0.60 18.52 16 6 O -0.56 -19.94 16.78 -4.11 -0.07 -20.01 16 7 C -0.03 -1.00 6.71 40.70 0.27 -0.72 16 8 C -0.20 -4.97 7.02 -19.54 -0.14 -5.11 16 9 C -0.01 -0.18 8.13 43.17 0.35 0.17 16 10 N -0.29 -8.53 11.91 -47.03 -0.56 -9.09 16 11 N -0.28 -7.87 3.75 -356.23 -1.34 -9.21 16 12 C 0.08 2.01 11.21 127.77 1.43 3.45 16 13 C -0.03 -0.40 6.76 30.50 0.21 -0.19 16 14 C -0.10 -1.14 7.07 31.54 0.22 -0.92 16 15 C -0.05 -0.79 6.76 30.38 0.21 -0.58 16 16 C -0.09 -2.80 1.97 -10.72 -0.02 -2.82 16 17 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 18 C -0.10 -2.72 4.86 30.62 0.15 -2.57 16 19 C -0.13 -4.25 6.06 30.53 0.19 -4.06 16 20 C 0.15 7.06 4.72 86.22 0.41 7.46 16 21 N -0.61 -29.65 2.77 -699.94 -1.94 -31.60 16 22 C -0.36 -19.51 9.43 84.03 0.79 -18.72 16 23 H 0.05 2.51 7.94 -2.91 -0.02 2.49 16 24 C -0.07 -3.89 4.66 84.86 0.40 -3.49 16 25 N -0.94 -56.82 12.73 21.65 0.28 -56.55 16 26 Si 1.11 50.06 29.99 68.60 2.06 52.11 16 27 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 29 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 30 C 0.16 6.20 5.56 86.36 0.48 6.68 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.57 6.41 -2.39 -0.02 1.55 16 33 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 34 H 0.41 9.99 8.40 -92.71 -0.78 9.21 16 35 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.09 2.18 7.67 -2.38 -0.02 2.16 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 1.99 6.37 -2.39 -0.02 1.97 16 46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.04 1.85 6.72 -2.39 -0.02 1.84 16 49 H 0.00 -0.02 7.84 -2.38 -0.02 -0.04 16 50 H 0.25 15.70 6.76 -92.71 -0.63 15.08 16 51 H 0.00 0.05 8.14 -2.38 -0.02 0.04 16 52 H 0.05 1.85 7.44 -2.39 -0.02 1.83 16 Total: -1.00 -74.09 408.14 3.01 -71.08 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.28 Total: 24.76 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 6.30 Total: -1.38 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -5.56 Total: -126.56 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.07 Total: -20.01 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.06 Total: 52.11 kcal Total: -74.09 3.01 -71.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025594912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.209 kcal (2) G-P(sol) polarization free energy of solvation -74.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds