Wall clock time and date at job start Wed Apr 1 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46851 * 2 1 4 4 N 1.46501 * 109.47339 * 119.99503 * 2 1 3 5 5 C 1.34770 * 120.00337 * 275.00483 * 4 2 1 6 6 O 1.21593 * 120.00126 * 359.97438 * 5 4 2 7 7 C 1.47452 * 119.99797 * 179.97438 * 5 4 2 8 8 C 1.39531 * 120.63707 * 359.97438 * 7 5 4 9 9 N 1.31630 * 120.62826 * 179.97438 * 8 7 5 10 10 C 1.32193 * 122.11704 * 359.97438 * 9 8 7 11 11 C 1.37757 * 121.22138 * 0.02562 * 10 9 8 12 12 C 1.39507 * 119.21481 * 359.73959 * 11 10 9 13 13 N 1.38447 * 120.96086 * 180.27993 * 12 11 10 14 14 C 1.46903 * 110.99731 * 300.22698 * 13 12 11 15 15 C 1.46900 * 110.99675 * 64.17449 * 13 12 11 16 16 C 1.53001 * 109.47319 * 240.00081 * 2 1 3 17 17 H 1.09001 * 109.51949 * 299.92130 * 16 2 1 18 18 C 1.53041 * 109.49659 * 59.99506 * 16 2 1 19 19 C 1.53040 * 109.53753 * 181.31679 * 18 16 2 20 20 C 1.53195 * 109.31362 * 298.63990 * 19 18 16 21 21 N 1.46923 * 108.89155 * 54.56321 * 20 19 18 22 22 C 1.36934 * 120.62978 * 126.46978 * 21 20 19 23 23 H 1.07997 * 119.99978 * 331.90774 * 22 21 20 24 24 C 1.38810 * 120.00385 * 151.91069 * 22 21 20 25 25 N 1.31626 * 119.99638 * 343.17619 * 24 22 21 26 26 Si 1.86793 * 120.00463 * 163.17439 * 24 22 21 27 27 H 1.48503 * 109.47141 * 90.00030 * 26 24 22 28 28 H 1.48500 * 109.47595 * 209.99829 * 26 24 22 29 29 H 1.48503 * 109.47257 * 330.00288 * 26 24 22 30 30 C 1.46961 * 118.71459 * 306.63745 * 21 20 19 31 31 H 1.08996 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46680 * 300.00252 * 1 2 3 33 33 H 1.08992 * 109.47148 * 59.99588 * 1 2 3 34 34 H 0.97002 * 119.99602 * 94.99855 * 4 2 1 35 35 H 1.07998 * 119.68858 * 359.95386 * 8 7 5 36 36 H 1.08004 * 119.38428 * 180.02562 * 10 9 8 37 37 H 1.08008 * 120.39506 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47712 * 59.99605 * 14 13 12 39 39 H 1.09003 * 109.46922 * 179.97438 * 14 13 12 40 40 H 1.08995 * 109.47303 * 299.99380 * 14 13 12 41 41 H 1.09003 * 109.47044 * 60.00914 * 15 13 12 42 42 H 1.09004 * 109.47020 * 180.02562 * 15 13 12 43 43 H 1.09003 * 109.47338 * 300.00058 * 15 13 12 44 44 H 1.09002 * 109.45724 * 61.29950 * 18 16 2 45 45 H 1.09002 * 109.46338 * 301.34305 * 18 16 2 46 46 H 1.08998 * 109.49439 * 178.68613 * 19 18 16 47 47 H 1.09003 * 109.51930 * 58.60529 * 19 18 16 48 48 H 1.09000 * 109.58217 * 174.41901 * 20 19 18 49 49 H 1.08998 * 109.58619 * 294.70412 * 20 19 18 50 50 H 0.97000 * 119.99586 * 180.02562 * 25 24 22 51 51 H 1.08993 * 109.46939 * 293.57319 * 30 21 20 52 52 H 1.09004 * 109.59279 * 173.22077 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1617 2.4116 7 6 2.6381 -0.7134 3.5612 8 6 2.9729 -2.0671 3.5138 9 7 3.4117 -2.6875 4.5886 10 6 3.5553 -2.0686 5.7479 11 6 3.2490 -0.7327 5.8869 12 6 2.7840 -0.0220 4.7802 13 7 2.4709 1.3231 4.8777 14 6 1.4119 1.5464 5.8710 15 6 3.6643 2.1198 5.1925 16 6 2.0401 -0.7212 -1.2492 17 1 1.6783 -1.7495 -1.2494 18 6 1.5302 -0.0003 -2.4992 19 6 2.0126 -0.7399 -3.7492 20 6 3.5443 -0.7369 -3.7802 21 7 4.0467 -1.2951 -2.5174 22 6 4.9374 -2.3351 -2.5198 23 1 4.9440 -3.0385 -3.3392 24 6 5.8317 -2.4855 -1.4689 25 7 6.0613 -1.4800 -0.6511 26 14 6.7095 -4.1147 -1.2152 27 1 7.9859 -4.1128 -1.9742 28 1 6.9934 -4.3044 0.2300 29 1 5.8471 -5.2224 -1.6998 30 6 3.5719 -0.7180 -1.2519 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6317 1.1527 35 1 2.8707 -2.6113 2.5865 36 1 3.9195 -2.6206 6.6018 37 1 3.3710 -0.2405 6.8405 38 1 1.7481 1.1942 6.8461 39 1 1.1857 2.6112 5.9278 40 1 0.5162 0.9996 5.5762 41 1 4.4061 1.9900 4.4044 42 1 3.3900 3.1724 5.2638 43 1 4.0821 1.7884 6.1431 44 1 1.9125 1.0204 -2.5110 45 1 0.4404 0.0204 -2.4874 46 1 1.6297 -0.2393 -4.6385 47 1 1.6512 -1.7680 -3.7263 48 1 3.8940 -1.3460 -4.6137 49 1 3.9054 0.2848 -3.8974 50 1 6.6865 -1.5850 0.0830 51 1 3.9354 0.3055 -1.1604 52 1 3.9401 -1.3146 -0.4172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025597939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:45 Heat of formation + Delta-G solvation = 37.473851 kcal Electronic energy + Delta-G solvation = -32096.764698 eV Core-core repulsion = 28097.261568 eV Total energy + Delta-G solvation = -3999.503130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.87339 -39.14260 -37.65317 -37.44799 -34.95084 -33.08642 -32.13348 -31.17643 -30.65214 -29.71255 -28.59995 -27.76268 -25.48262 -25.13816 -24.57524 -23.17075 -21.99154 -21.66053 -20.62868 -20.06526 -19.09306 -17.75427 -17.01577 -16.82121 -16.56345 -15.45662 -15.32455 -15.03586 -14.83993 -14.61091 -14.42793 -14.12479 -14.02767 -13.68664 -13.52104 -13.33872 -13.20630 -13.08138 -12.60735 -12.52879 -12.43992 -12.40352 -12.13947 -12.06923 -11.87772 -11.85444 -11.32785 -11.00809 -10.86400 -10.65784 -10.41095 -10.20932 -10.04793 -10.03694 -9.86686 -9.63615 -9.56400 -9.41991 -9.28876 -9.26636 -8.58078 -8.46713 -8.44396 -6.63468 -5.77029 -3.19786 0.65902 0.98865 3.13795 3.37621 3.45923 3.46999 3.47140 3.58806 3.89530 4.25578 4.50182 4.63405 4.76221 4.86330 5.01611 5.07887 5.10656 5.22381 5.35064 5.36318 5.37652 5.47778 5.50283 5.53700 5.57665 5.61706 5.66305 5.67179 5.78791 5.82764 5.86869 5.96849 6.12846 6.20282 6.24795 6.35788 6.36629 6.47586 6.50348 6.53586 6.70221 6.71042 6.81990 6.92297 6.94104 7.05237 7.12337 7.37946 7.68269 7.79874 7.80690 7.91710 8.46210 8.64411 9.22978 9.86563 10.44216 11.30453 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.004006 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.519126 B = 6988.177849 C = 8853.753040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 H 0.085 0.915 4 N -0.715 5.715 5 C 0.562 3.438 6 O -0.505 6.505 7 C -0.162 4.162 8 C 0.146 3.854 9 N -0.489 5.489 10 C 0.125 3.875 11 C -0.219 4.219 12 C 0.191 3.809 13 N -0.492 5.492 14 C 0.034 3.966 15 C 0.034 3.966 16 C -0.121 4.121 17 H 0.067 0.933 18 C -0.101 4.101 19 C -0.133 4.133 20 C 0.143 3.857 21 N -0.592 5.592 22 C -0.253 4.253 23 H 0.064 0.936 24 C 0.004 3.996 25 N -0.899 5.899 26 Si 0.896 3.104 27 H -0.288 1.288 28 H -0.289 1.289 29 H -0.279 1.279 30 C 0.181 3.819 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.028 0.972 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.016 0.984 50 H 0.253 0.747 51 H 0.016 0.984 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.358 3.516 12.019 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.103 0.897 4 N -0.367 5.367 5 C 0.347 3.653 6 O -0.380 6.380 7 C -0.169 4.169 8 C -0.013 4.013 9 N -0.198 5.198 10 C -0.031 4.031 11 C -0.241 4.241 12 C 0.087 3.913 13 N -0.212 5.212 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.142 4.142 17 H 0.085 0.915 18 C -0.139 4.139 19 C -0.172 4.172 20 C 0.017 3.983 21 N -0.315 5.315 22 C -0.383 4.383 23 H 0.082 0.918 24 C -0.194 4.194 25 N -0.543 5.543 26 Si 0.726 3.274 27 H -0.215 1.215 28 H -0.215 1.215 29 H -0.205 1.205 30 C 0.055 3.945 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.232 0.768 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.153 0.847 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.034 0.966 50 H 0.063 0.937 51 H 0.034 0.966 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.401 3.700 11.677 16.070 hybrid contribution 0.853 -0.678 1.028 1.498 sum -9.548 3.022 12.706 16.178 Atomic orbital electron populations 1.22208 0.96122 1.01625 1.01907 1.20938 0.92874 0.97527 0.83674 0.89727 1.45989 1.67175 1.14047 1.09459 1.17671 0.78549 0.86722 0.82408 1.90801 1.48427 1.14428 1.84339 1.21205 1.05301 0.95223 0.95124 1.23108 0.90694 0.90467 0.97034 1.67710 1.13278 1.39502 0.99269 1.22732 0.93466 0.91552 0.95359 1.22673 1.04317 0.96945 1.00163 1.19040 0.91057 0.89818 0.91380 1.59089 1.09909 1.03259 1.48904 1.22420 0.94322 1.02791 0.91738 1.22425 0.91277 0.97906 0.99591 1.22157 1.01303 0.98663 0.92071 0.91452 1.21436 0.98766 0.99022 0.94725 1.21994 0.99066 0.99831 0.96337 1.20918 0.91021 0.96339 0.90047 1.44037 1.49486 1.38470 0.99481 1.19159 1.10063 1.01811 1.07218 0.91828 1.25018 0.97066 0.97236 1.00105 1.70048 1.36701 1.28753 1.18811 0.86398 0.79735 0.84068 0.77208 1.21458 1.21475 1.20464 1.20761 0.86260 0.97184 0.90254 0.92874 0.92713 0.91591 0.76787 0.81943 0.82532 0.84678 0.95398 0.90465 0.91257 0.90810 0.90416 0.95383 0.92615 0.93107 0.93185 0.92482 0.93052 0.96630 0.93736 0.96596 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.13 37.16 0.34 -1.87 16 2 C 0.15 2.51 2.16 -67.93 -0.15 2.37 16 3 H 0.08 1.56 7.58 -51.92 -0.39 1.16 16 4 N -0.71 -11.49 4.43 -54.87 -0.24 -11.73 16 5 C 0.56 9.57 7.73 -12.51 -0.10 9.47 16 6 O -0.51 -9.77 14.82 5.28 0.08 -9.69 16 7 C -0.16 -2.48 5.91 -104.66 -0.62 -3.10 16 8 C 0.15 2.13 10.71 -17.16 -0.18 1.94 16 9 N -0.49 -6.96 10.34 -13.01 -0.13 -7.09 16 10 C 0.12 1.44 11.15 -17.57 -0.20 1.24 16 11 C -0.22 -2.43 8.66 -39.28 -0.34 -2.77 16 12 C 0.19 2.62 4.73 -83.40 -0.39 2.22 16 13 N -0.49 -6.50 3.08 -186.40 -0.57 -7.07 16 14 C 0.03 0.34 9.34 60.07 0.56 0.91 16 15 C 0.03 0.39 9.38 60.06 0.56 0.95 16 16 C -0.12 -2.16 1.98 -90.50 -0.18 -2.33 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 18 C -0.10 -1.65 4.85 -26.69 -0.13 -1.78 16 19 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 20 C 0.14 2.99 6.51 -3.71 -0.02 2.97 16 21 N -0.59 -14.57 3.00 -172.30 -0.52 -15.09 16 22 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 23 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 24 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 25 N -0.90 -25.63 11.20 55.49 0.62 -25.01 16 26 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 C 0.18 4.15 4.34 -3.69 -0.02 4.14 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 34 H 0.40 6.00 6.49 -40.82 -0.26 5.73 16 35 H 0.16 2.17 6.42 -52.49 -0.34 1.84 16 36 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.14 1.15 7.16 -52.48 -0.38 0.77 16 38 H 0.03 0.23 7.17 -51.93 -0.37 -0.14 16 39 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.03 0.26 7.42 -51.93 -0.39 -0.12 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.71 6.36 -51.93 -0.33 0.38 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 52 H 0.09 2.20 5.58 -51.93 -0.29 1.91 16 LS Contribution 405.38 15.07 6.11 6.11 Total: -1.00 -32.22 405.38 -9.48 -41.70 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -8.54 Total: 6.50 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.25 Total: 5.00 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.85 Total: -65.99 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.22 -9.48 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025597939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.171 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds