Wall clock time and date at job start Wed Apr 1 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46851 * 2 1 4 4 N 1.46501 * 109.47339 * 119.99503 * 2 1 3 5 5 C 1.34770 * 120.00337 * 275.00483 * 4 2 1 6 6 O 1.21593 * 120.00126 * 359.97438 * 5 4 2 7 7 C 1.47452 * 119.99797 * 179.97438 * 5 4 2 8 8 C 1.39531 * 120.63707 * 359.97438 * 7 5 4 9 9 N 1.31630 * 120.62826 * 179.97438 * 8 7 5 10 10 C 1.32193 * 122.11704 * 359.97438 * 9 8 7 11 11 C 1.37757 * 121.22138 * 0.02562 * 10 9 8 12 12 C 1.39507 * 119.21481 * 359.73959 * 11 10 9 13 13 N 1.38447 * 120.96086 * 180.27993 * 12 11 10 14 14 C 1.46903 * 110.99731 * 300.22698 * 13 12 11 15 15 C 1.46900 * 110.99675 * 64.17449 * 13 12 11 16 16 C 1.53001 * 109.47319 * 240.00081 * 2 1 3 17 17 H 1.09001 * 109.51949 * 299.92130 * 16 2 1 18 18 C 1.53041 * 109.49659 * 59.99506 * 16 2 1 19 19 C 1.53040 * 109.53753 * 181.31679 * 18 16 2 20 20 C 1.53195 * 109.31362 * 298.63990 * 19 18 16 21 21 N 1.46923 * 108.89155 * 54.56321 * 20 19 18 22 22 C 1.36934 * 120.62978 * 126.46978 * 21 20 19 23 23 H 1.07997 * 119.99978 * 331.90774 * 22 21 20 24 24 C 1.38810 * 120.00385 * 151.91069 * 22 21 20 25 25 N 1.31626 * 119.99638 * 343.17619 * 24 22 21 26 26 Si 1.86793 * 120.00463 * 163.17439 * 24 22 21 27 27 H 1.48503 * 109.47141 * 90.00030 * 26 24 22 28 28 H 1.48500 * 109.47595 * 209.99829 * 26 24 22 29 29 H 1.48503 * 109.47257 * 330.00288 * 26 24 22 30 30 C 1.46961 * 118.71459 * 306.63745 * 21 20 19 31 31 H 1.08996 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46680 * 300.00252 * 1 2 3 33 33 H 1.08992 * 109.47148 * 59.99588 * 1 2 3 34 34 H 0.97002 * 119.99602 * 94.99855 * 4 2 1 35 35 H 1.07998 * 119.68858 * 359.95386 * 8 7 5 36 36 H 1.08004 * 119.38428 * 180.02562 * 10 9 8 37 37 H 1.08008 * 120.39506 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47712 * 59.99605 * 14 13 12 39 39 H 1.09003 * 109.46922 * 179.97438 * 14 13 12 40 40 H 1.08995 * 109.47303 * 299.99380 * 14 13 12 41 41 H 1.09003 * 109.47044 * 60.00914 * 15 13 12 42 42 H 1.09004 * 109.47020 * 180.02562 * 15 13 12 43 43 H 1.09003 * 109.47338 * 300.00058 * 15 13 12 44 44 H 1.09002 * 109.45724 * 61.29950 * 18 16 2 45 45 H 1.09002 * 109.46338 * 301.34305 * 18 16 2 46 46 H 1.08998 * 109.49439 * 178.68613 * 19 18 16 47 47 H 1.09003 * 109.51930 * 58.60529 * 19 18 16 48 48 H 1.09000 * 109.58217 * 174.41901 * 20 19 18 49 49 H 1.08998 * 109.58619 * 294.70412 * 20 19 18 50 50 H 0.97000 * 119.99586 * 180.02562 * 25 24 22 51 51 H 1.08993 * 109.46939 * 293.57319 * 30 21 20 52 52 H 1.09004 * 109.59279 * 173.22077 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1617 2.4116 7 6 2.6381 -0.7134 3.5612 8 6 2.9729 -2.0671 3.5138 9 7 3.4117 -2.6875 4.5886 10 6 3.5553 -2.0686 5.7479 11 6 3.2490 -0.7327 5.8869 12 6 2.7840 -0.0220 4.7802 13 7 2.4709 1.3231 4.8777 14 6 1.4119 1.5464 5.8710 15 6 3.6643 2.1198 5.1925 16 6 2.0401 -0.7212 -1.2492 17 1 1.6783 -1.7495 -1.2494 18 6 1.5302 -0.0003 -2.4992 19 6 2.0126 -0.7399 -3.7492 20 6 3.5443 -0.7369 -3.7802 21 7 4.0467 -1.2951 -2.5174 22 6 4.9374 -2.3351 -2.5198 23 1 4.9440 -3.0385 -3.3392 24 6 5.8317 -2.4855 -1.4689 25 7 6.0613 -1.4800 -0.6511 26 14 6.7095 -4.1147 -1.2152 27 1 7.9859 -4.1128 -1.9742 28 1 6.9934 -4.3044 0.2300 29 1 5.8471 -5.2224 -1.6998 30 6 3.5719 -0.7180 -1.2519 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6317 1.1527 35 1 2.8707 -2.6113 2.5865 36 1 3.9195 -2.6206 6.6018 37 1 3.3710 -0.2405 6.8405 38 1 1.7481 1.1942 6.8461 39 1 1.1857 2.6112 5.9278 40 1 0.5162 0.9996 5.5762 41 1 4.4061 1.9900 4.4044 42 1 3.3900 3.1724 5.2638 43 1 4.0821 1.7884 6.1431 44 1 1.9125 1.0204 -2.5110 45 1 0.4404 0.0204 -2.4874 46 1 1.6297 -0.2393 -4.6385 47 1 1.6512 -1.7680 -3.7263 48 1 3.8940 -1.3460 -4.6137 49 1 3.9054 0.2848 -3.8974 50 1 6.6865 -1.5850 0.0830 51 1 3.9354 0.3055 -1.1604 52 1 3.9401 -1.3146 -0.4172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025597939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:44 Heat of formation + Delta-G solvation = 17.555653 kcal Electronic energy + Delta-G solvation = -32097.628416 eV Core-core repulsion = 28097.261568 eV Total energy + Delta-G solvation = -4000.366848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.93403 -40.46751 -39.15195 -38.42839 -36.48809 -34.80458 -33.44689 -32.20717 -32.07189 -31.36256 -30.00855 -28.59383 -27.12428 -26.34365 -25.70682 -24.56004 -23.67999 -22.72808 -21.98787 -21.40891 -20.64774 -18.92486 -18.64382 -18.06277 -17.74223 -16.85060 -16.70227 -16.35894 -16.01999 -15.79195 -15.62984 -15.54780 -15.26143 -15.01751 -14.92699 -14.66795 -14.55031 -14.46479 -14.08481 -13.99840 -13.64774 -13.35901 -13.31648 -13.28107 -13.01162 -12.93675 -12.73775 -12.69046 -12.59369 -12.32880 -12.11744 -11.96877 -11.68299 -11.47238 -11.32471 -11.07823 -11.01822 -10.63726 -10.53607 -10.48062 -10.31603 -9.89318 -9.37475 -8.64140 -7.84637 -5.30785 -0.38690 -0.00232 1.45798 1.48533 1.57471 1.95094 2.23148 2.51884 2.68134 2.78777 3.26766 3.29405 3.60099 3.71380 3.81795 3.85478 3.99611 4.06273 4.11967 4.17250 4.29162 4.31475 4.33714 4.44329 4.50482 4.53536 4.53758 4.54093 4.57412 4.70019 4.80102 4.87835 4.88757 4.90898 4.92560 5.00343 5.07602 5.09415 5.18175 5.22358 5.30854 5.40695 5.42003 5.50352 5.58306 5.62994 5.71687 5.82395 5.87769 6.19740 6.40459 6.61171 6.80002 7.17118 7.33454 7.89055 8.41334 9.19884 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.004006 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.519126 B = 6988.177849 C = 8853.753040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 H 0.058 0.942 4 N -0.714 5.714 5 C 0.559 3.441 6 O -0.536 6.536 7 C -0.190 4.190 8 C 0.139 3.861 9 N -0.511 5.511 10 C 0.128 3.872 11 C -0.207 4.207 12 C 0.184 3.816 13 N -0.521 5.521 14 C 0.036 3.964 15 C 0.037 3.963 16 C -0.105 4.105 17 H 0.072 0.928 18 C -0.099 4.099 19 C -0.121 4.121 20 C 0.135 3.865 21 N -0.611 5.611 22 C -0.262 4.262 23 H 0.065 0.935 24 C -0.043 4.043 25 N -0.930 5.930 26 Si 0.959 3.041 27 H -0.288 1.288 28 H -0.294 1.294 29 H -0.267 1.267 30 C 0.194 3.806 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.401 0.599 35 H 0.162 0.838 36 H 0.195 0.805 37 H 0.170 0.830 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.005 0.995 50 H 0.246 0.754 51 H -0.025 1.025 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.890 2.679 13.067 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.054 3.946 3 H 0.076 0.924 4 N -0.366 5.366 5 C 0.345 3.655 6 O -0.413 6.413 7 C -0.196 4.196 8 C -0.020 4.020 9 N -0.221 5.221 10 C -0.027 4.027 11 C -0.228 4.228 12 C 0.080 3.920 13 N -0.242 5.242 14 C -0.110 4.110 15 C -0.109 4.109 16 C -0.126 4.126 17 H 0.090 0.910 18 C -0.137 4.137 19 C -0.160 4.160 20 C 0.009 3.991 21 N -0.334 5.334 22 C -0.393 4.393 23 H 0.083 0.917 24 C -0.239 4.239 25 N -0.576 5.576 26 Si 0.787 3.213 27 H -0.215 1.215 28 H -0.220 1.220 29 H -0.192 1.192 30 C 0.068 3.932 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.236 0.764 35 H 0.179 0.821 36 H 0.212 0.788 37 H 0.187 0.813 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.023 0.977 50 H 0.055 0.945 51 H -0.007 1.007 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.961 2.853 12.693 17.672 hybrid contribution 1.399 -0.363 0.698 1.605 sum -10.561 2.491 13.390 17.235 Atomic orbital electron populations 1.22096 0.93346 1.02714 1.02430 1.20855 0.94830 0.95772 0.83114 0.92407 1.46017 1.66986 1.14182 1.09384 1.18010 0.77917 0.86478 0.83048 1.90763 1.50039 1.15599 1.84943 1.21189 1.07394 0.95784 0.95258 1.23090 0.91079 0.90295 0.97521 1.67746 1.14089 1.40168 1.00052 1.23393 0.91893 0.92050 0.95375 1.22954 1.02633 0.96676 1.00570 1.19274 0.90818 0.90356 0.91530 1.59009 1.11085 1.03218 1.50845 1.22448 0.93062 1.03433 0.92036 1.22404 0.90303 0.98549 0.99632 1.21923 0.97184 0.99491 0.93957 0.90966 1.21464 1.00919 0.98114 0.93236 1.21874 0.95485 1.00594 0.98060 1.21119 0.94077 0.95376 0.88485 1.44343 1.49600 1.38371 1.01134 1.19483 1.10206 1.02437 1.07139 0.91698 1.25700 0.98107 1.00000 1.00096 1.70222 1.37523 1.30548 1.19263 0.85413 0.78565 0.80785 0.76536 1.21547 1.21988 1.19183 1.20505 0.89710 0.93944 0.89055 0.91408 0.93468 0.89755 0.76375 0.82095 0.78800 0.81268 0.92941 0.89478 0.92348 0.93676 0.89225 0.92900 0.93333 0.89376 0.89878 0.92190 0.93054 0.97685 0.94468 1.00720 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.13 71.98 0.66 -3.19 16 2 C 0.16 5.26 2.16 44.99 0.10 5.36 16 3 H 0.06 2.23 7.58 -2.38 -0.02 2.22 16 4 N -0.71 -24.05 4.43 -445.77 -1.98 -26.02 16 5 C 0.56 20.05 7.73 86.67 0.67 20.72 16 6 O -0.54 -21.77 14.82 -4.01 -0.06 -21.83 16 7 C -0.19 -6.00 5.91 -19.89 -0.12 -6.12 16 8 C 0.14 4.16 10.71 85.04 0.91 5.07 16 9 N -0.51 -14.26 10.34 -195.07 -2.02 -16.27 16 10 C 0.13 2.67 11.15 84.52 0.94 3.61 16 11 C -0.21 -4.13 8.66 22.46 0.19 -3.93 16 12 C 0.18 4.98 4.73 39.06 0.18 5.16 16 13 N -0.52 -13.56 3.08 -743.65 -2.29 -15.85 16 14 C 0.04 0.68 9.34 127.69 1.19 1.87 16 15 C 0.04 0.82 9.38 127.69 1.20 2.02 16 16 C -0.11 -3.73 1.98 -10.72 -0.02 -3.76 16 17 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 18 C -0.10 -3.05 4.85 30.62 0.15 -2.90 16 19 C -0.12 -3.85 6.08 30.67 0.19 -3.66 16 20 C 0.13 5.62 6.51 86.36 0.56 6.18 16 21 N -0.61 -30.76 3.00 -699.03 -2.10 -32.85 16 22 C -0.26 -14.41 9.58 84.03 0.81 -13.61 16 23 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 24 C -0.04 -2.41 4.92 84.86 0.42 -1.99 16 25 N -0.93 -55.22 11.20 21.65 0.24 -54.98 16 26 Si 0.96 44.82 29.59 68.60 2.03 46.84 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 29 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 30 C 0.19 9.26 4.34 86.35 0.37 9.63 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.08 1.88 6.40 -2.39 -0.02 1.87 16 34 H 0.40 12.78 6.49 -92.71 -0.60 12.18 16 35 H 0.16 4.59 6.42 -2.91 -0.02 4.57 16 36 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.17 2.17 7.16 -2.91 -0.02 2.15 16 38 H 0.05 0.71 7.17 -2.39 -0.02 0.70 16 39 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 43 H 0.05 0.88 7.42 -2.39 -0.02 0.86 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.09 2.12 6.36 -2.39 -0.02 2.10 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.05 2.09 7.93 -2.39 -0.02 2.08 16 49 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 50 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 51 H -0.03 -1.39 8.14 -2.39 -0.02 -1.41 16 52 H 0.06 3.27 5.58 -2.38 -0.01 3.26 16 Total: -1.00 -73.37 405.38 2.55 -70.82 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.31 Total: 29.67 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 8.40 Total: 20.47 kcal Atomic # 7 Polarization: -137.84 SS G_CDS: -8.14 Total: -145.98 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -73.37 2.55 -70.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025597939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.375 kcal (2) G-P(sol) polarization free energy of solvation -73.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds