Wall clock time and date at job start Wed Apr 1 2020 05:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47229 * 2 1 4 4 N 1.46501 * 109.47458 * 240.00077 * 2 1 3 5 5 C 1.34779 * 119.99915 * 84.99826 * 4 2 1 6 6 O 1.21601 * 119.99855 * 0.02562 * 5 4 2 7 7 C 1.47433 * 119.99634 * 180.02562 * 5 4 2 8 8 C 1.39968 * 120.61164 * 355.50073 * 7 5 4 9 9 C 1.38335 * 118.37155 * 180.02562 * 8 7 5 10 10 C 1.38382 * 119.50327 * 0.02562 * 9 8 7 11 11 N 1.31839 * 121.21848 * 0.25819 * 10 9 8 12 12 C 1.32437 * 121.77839 * 359.46923 * 11 10 9 13 13 N 1.38262 * 119.82847 * 180.26974 * 12 11 10 14 14 C 1.46904 * 110.99998 * 296.68884 * 13 12 11 15 15 C 1.46898 * 111.00086 * 60.64057 * 13 12 11 16 16 C 1.52997 * 109.47126 * 119.99946 * 2 1 3 17 17 H 1.09000 * 109.49747 * 59.93945 * 16 2 1 18 18 C 1.53039 * 109.49725 * 299.83900 * 16 2 1 19 19 C 1.53046 * 109.53736 * 178.68128 * 18 16 2 20 20 C 1.53193 * 109.30957 * 61.36705 * 19 18 16 21 21 N 1.46926 * 108.77813 * 305.36268 * 20 19 18 22 22 C 1.36933 * 120.63088 * 233.58813 * 21 20 19 23 23 H 1.08000 * 119.99808 * 148.99018 * 22 21 20 24 24 C 1.38812 * 120.00387 * 328.99470 * 22 21 20 25 25 N 1.31629 * 119.99645 * 344.72612 * 24 22 21 26 26 Si 1.86793 * 120.00252 * 164.72986 * 24 22 21 27 27 H 1.48496 * 109.47477 * 60.00006 * 26 24 22 28 28 H 1.48500 * 109.47047 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47050 * 299.99407 * 26 24 22 30 30 C 1.46930 * 118.73494 * 53.60927 * 21 20 19 31 31 H 1.09003 * 109.46594 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47176 * 300.00018 * 1 2 3 33 33 H 1.09007 * 109.47106 * 60.00333 * 1 2 3 34 34 H 0.96998 * 119.99991 * 265.00362 * 4 2 1 35 35 H 1.07999 * 120.81396 * 0.04962 * 8 7 5 36 36 H 1.07999 * 120.25111 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.38741 * 179.97438 * 10 9 8 38 38 H 1.08996 * 109.46943 * 59.99797 * 14 13 12 39 39 H 1.08996 * 109.46978 * 180.02562 * 14 13 12 40 40 H 1.09007 * 109.46756 * 299.99854 * 14 13 12 41 41 H 1.09009 * 109.46967 * 63.68152 * 15 13 12 42 42 H 1.08997 * 109.47268 * 183.67450 * 15 13 12 43 43 H 1.08998 * 109.47284 * 303.68083 * 15 13 12 44 44 H 1.09000 * 109.46290 * 298.69976 * 18 16 2 45 45 H 1.09004 * 109.46021 * 58.66354 * 18 16 2 46 46 H 1.08997 * 109.49891 * 301.41167 * 19 18 16 47 47 H 1.09003 * 109.51966 * 181.33235 * 19 18 16 48 48 H 1.09006 * 109.58366 * 185.57642 * 20 19 18 49 49 H 1.09005 * 109.58639 * 65.15293 * 20 19 18 50 50 H 0.96995 * 120.00018 * 180.02562 * 25 24 22 51 51 H 1.09002 * 109.58251 * 186.60751 * 30 21 20 52 52 H 1.09004 * 109.58627 * 66.18231 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1618 -2.4116 7 6 2.6381 -0.7134 -3.5610 8 6 3.0627 -2.0453 -3.4916 9 6 3.5151 -2.6522 -4.6494 10 6 3.5361 -1.9339 -5.8320 11 7 3.1371 -0.6780 -5.8759 12 6 2.6899 -0.0503 -4.7989 13 7 2.2763 1.2657 -4.8920 14 6 3.3914 2.1421 -5.2749 15 6 1.1548 1.3999 -5.8311 16 6 2.0400 -0.7212 1.2492 17 1 1.6760 -1.7487 1.2502 18 6 1.5335 0.0021 2.4992 19 6 2.0158 -0.7375 3.7493 20 6 3.5475 -0.7380 3.7782 21 7 4.0442 -1.3005 2.5150 22 6 4.9308 -2.3440 2.5168 23 1 4.9208 -3.0624 1.7105 24 6 5.8422 -2.4787 3.5551 25 7 6.0667 -1.4687 4.3688 26 14 6.7502 -4.0931 3.7974 27 1 7.5439 -4.4021 2.5810 28 1 7.6589 -3.9792 4.9664 29 1 5.7690 -5.1815 4.0381 30 6 3.5719 -0.7215 1.2499 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8901 34 1 2.2491 -1.6317 -1.1526 35 1 3.0373 -2.5860 -2.5571 36 1 3.8503 -3.6787 -4.6305 37 1 3.8900 -2.4094 -6.7347 38 1 3.7832 1.8296 -6.2428 39 1 3.0385 3.1713 -5.3405 40 1 4.1797 2.0757 -4.5250 41 1 0.2954 0.8465 -5.4523 42 1 0.8918 2.4526 -5.9351 43 1 1.4447 1.0001 -6.8028 44 1 1.9182 1.0219 2.5096 45 1 0.4437 0.0253 2.4888 46 1 1.6520 -1.7647 3.7273 47 1 1.6352 -0.2356 4.6389 48 1 3.8970 -1.3471 4.6119 49 1 3.9111 0.2834 3.8915 50 1 6.7039 -1.5627 5.0941 51 1 3.9375 -1.3198 0.4153 52 1 3.9376 0.3011 1.1569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025618412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:08 Heat of formation + Delta-G solvation = 19.569513 kcal Electronic energy + Delta-G solvation = -31535.241625 eV Core-core repulsion = 27534.962105 eV Total energy + Delta-G solvation = -4000.279520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.90446 -40.49659 -39.16006 -37.91356 -36.55764 -34.71359 -33.80833 -32.43178 -32.00288 -31.39457 -29.82723 -28.59205 -27.13439 -26.23192 -25.68755 -24.61390 -23.58772 -22.71020 -22.10149 -21.40745 -20.67058 -18.89209 -18.53316 -17.97615 -17.82540 -16.85199 -16.65167 -16.48003 -16.01409 -15.74814 -15.73066 -15.37350 -15.29964 -14.99041 -14.93102 -14.66668 -14.34211 -14.14837 -14.03688 -13.94245 -13.60990 -13.58028 -13.23853 -13.17299 -12.98116 -12.94427 -12.72335 -12.72143 -12.54935 -12.29823 -12.19156 -11.97628 -11.73967 -11.48071 -11.22895 -11.07687 -10.96672 -10.95619 -10.69565 -10.52103 -10.06840 -9.86776 -9.44257 -8.61756 -7.85179 -5.34802 -0.36080 0.11505 1.47893 1.50360 1.56903 1.98116 2.19506 2.52062 2.65281 2.79222 3.29940 3.44378 3.56942 3.77282 3.84296 3.97789 4.00661 4.05411 4.07947 4.13244 4.35849 4.37418 4.38357 4.45323 4.51497 4.54723 4.56765 4.63560 4.67888 4.80787 4.85543 4.88537 4.88987 4.91755 4.94729 4.98778 5.07429 5.09631 5.14534 5.28075 5.29927 5.37589 5.42149 5.50263 5.55823 5.64510 5.69881 5.79278 5.83846 6.24435 6.41566 6.62491 6.81057 7.16957 7.36888 7.87308 8.41769 9.20857 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012011 B = 0.003019 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.657337 B = 9272.079012 C =10730.551826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 H 0.063 0.937 4 N -0.714 5.714 5 C 0.557 3.443 6 O -0.535 6.535 7 C -0.180 4.180 8 C -0.041 4.041 9 C -0.171 4.171 10 C 0.129 3.871 11 N -0.536 5.536 12 C 0.326 3.674 13 N -0.496 5.496 14 C 0.042 3.958 15 C 0.039 3.961 16 C -0.093 4.093 17 H 0.080 0.920 18 C -0.098 4.098 19 C -0.130 4.130 20 C 0.175 3.825 21 N -0.608 5.608 22 C -0.264 4.264 23 H 0.070 0.930 24 C -0.051 4.051 25 N -0.938 5.938 26 Si 0.968 3.032 27 H -0.274 1.274 28 H -0.298 1.298 29 H -0.274 1.274 30 C 0.157 3.843 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.405 0.595 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.192 0.808 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.047 0.953 49 H -0.012 1.012 50 H 0.249 0.751 51 H 0.053 0.947 52 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 -1.767 -19.084 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 H 0.081 0.919 4 N -0.367 5.367 5 C 0.343 3.657 6 O -0.412 6.412 7 C -0.187 4.187 8 C -0.068 4.068 9 C -0.190 4.190 10 C -0.030 4.030 11 N -0.248 5.248 12 C 0.098 3.902 13 N -0.219 5.219 14 C -0.105 4.105 15 C -0.108 4.108 16 C -0.113 4.113 17 H 0.099 0.901 18 C -0.136 4.136 19 C -0.168 4.168 20 C 0.050 3.950 21 N -0.331 5.331 22 C -0.394 4.394 23 H 0.088 0.912 24 C -0.246 4.246 25 N -0.583 5.583 26 Si 0.796 3.204 27 H -0.199 1.199 28 H -0.225 1.225 29 H -0.200 1.200 30 C 0.031 3.969 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.242 0.758 35 H 0.178 0.822 36 H 0.197 0.803 37 H 0.209 0.791 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.065 0.935 49 H 0.006 0.994 50 H 0.058 0.942 51 H 0.072 0.928 52 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -11.570 -0.260 -19.313 22.515 hybrid contribution 1.431 -1.422 0.629 2.113 sum -10.139 -1.681 -18.683 21.323 Atomic orbital electron populations 1.22108 0.93731 1.02762 1.02305 1.20821 0.94759 0.96024 0.82919 0.91920 1.45956 1.67333 1.14335 1.09041 1.18048 0.78040 0.86518 0.83063 1.90799 1.49623 1.15985 1.84757 1.20817 1.07280 0.96237 0.94343 1.22150 0.91777 0.91920 1.00927 1.22504 1.00723 1.03530 0.92231 1.23426 0.91639 0.88334 0.99571 1.67885 1.12977 1.12478 1.31490 1.19931 0.91360 0.90800 0.88138 1.59892 1.09398 1.01988 1.50621 1.22279 0.92204 0.97114 0.98896 1.22326 0.92020 1.03308 0.93111 1.21737 0.95965 0.99995 0.93631 0.90130 1.21441 1.00896 0.98074 0.93156 1.22003 0.96555 1.00245 0.98044 1.20585 0.91014 0.94549 0.88894 1.44272 1.50107 1.37811 1.00892 1.19493 1.09561 1.01814 1.08536 0.91205 1.25922 0.98197 1.00294 1.00195 1.70195 1.37204 1.30954 1.19973 0.85339 0.78102 0.79937 0.77045 1.19928 1.22474 1.20016 1.20945 0.92838 0.94649 0.88432 0.91288 0.90219 0.93453 0.75815 0.82173 0.80338 0.79087 0.94094 0.89364 0.93144 0.92339 0.89453 0.94088 0.93370 0.89420 0.92463 0.91323 0.93451 0.99391 0.94234 0.92809 0.98971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.14 71.98 0.66 -2.79 16 2 C 0.16 4.41 2.16 44.99 0.10 4.51 16 3 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 4 N -0.71 -18.44 4.43 -445.80 -1.97 -20.41 16 5 C 0.56 16.48 7.72 86.67 0.67 17.15 16 6 O -0.53 -19.32 14.74 -4.03 -0.06 -19.38 16 7 C -0.18 -4.57 5.91 -19.88 -0.12 -4.69 16 8 C -0.04 -0.75 9.63 22.71 0.22 -0.53 16 9 C -0.17 -2.31 10.09 22.33 0.23 -2.09 16 10 C 0.13 2.01 11.16 84.73 0.95 2.96 16 11 N -0.54 -12.10 9.44 -192.51 -1.82 -13.92 16 12 C 0.33 8.55 5.34 133.64 0.71 9.27 16 13 N -0.50 -13.30 2.96 -751.04 -2.22 -15.52 16 14 C 0.04 0.99 9.45 127.69 1.21 2.20 16 15 C 0.04 0.85 9.51 127.69 1.21 2.06 16 16 C -0.09 -2.86 1.97 -10.72 -0.02 -2.88 16 17 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 18 C -0.10 -2.97 4.86 30.62 0.15 -2.82 16 19 C -0.13 -4.64 6.08 30.67 0.19 -4.45 16 20 C 0.18 8.46 5.27 86.36 0.46 8.91 16 21 N -0.61 -30.08 2.98 -699.07 -2.08 -32.16 16 22 C -0.26 -14.18 9.56 84.03 0.80 -13.37 16 23 H 0.07 3.56 7.87 -2.91 -0.02 3.54 16 24 C -0.05 -2.80 4.93 84.86 0.42 -2.38 16 25 N -0.94 -55.85 11.31 21.65 0.24 -55.61 16 26 Si 0.97 43.98 29.58 68.60 2.03 46.01 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 30 C 0.16 6.40 5.55 86.36 0.48 6.88 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.63 6.40 -2.39 -0.02 1.62 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.41 8.71 6.54 -92.71 -0.61 8.11 16 35 H 0.16 2.24 6.54 -2.91 -0.02 2.22 16 36 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.04 0.90 7.90 -2.39 -0.02 0.89 16 39 H 0.09 1.79 8.08 -2.39 -0.02 1.77 16 40 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.09 1.60 8.06 -2.39 -0.02 1.58 16 43 H 0.04 0.84 7.74 -2.39 -0.02 0.83 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.09 2.09 6.37 -2.38 -0.02 2.08 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.05 2.58 6.24 -2.38 -0.01 2.57 16 49 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 50 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 51 H 0.05 2.10 7.44 -2.39 -0.02 2.08 16 52 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 Total: -1.00 -73.58 407.67 2.73 -70.86 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.30 Total: 22.22 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 8.30 Total: 17.91 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -7.85 Total: -137.62 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.06 Total: -19.38 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -73.58 2.73 -70.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025618412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.427 kcal (2) G-P(sol) polarization free energy of solvation -73.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds