Wall clock time and date at job start Wed Apr 1 2020 05:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47369 * 2 1 4 4 N 1.46499 * 109.46933 * 240.00080 * 2 1 3 5 5 C 1.34770 * 120.00347 * 85.00002 * 4 2 1 6 6 O 1.21608 * 119.99934 * 359.97438 * 5 4 2 7 7 C 1.47409 * 120.00381 * 179.97438 * 5 4 2 8 8 N 1.31870 * 125.93424 * 0.02562 * 7 5 4 9 9 C 1.33370 * 109.15701 * 179.91185 * 8 7 5 10 10 C 1.34872 * 108.15797 * 359.97438 * 9 8 7 11 11 N 1.35674 * 107.37208 * 359.84283 * 10 9 8 12 12 C 1.46450 * 124.57524 * 179.48096 * 11 10 9 13 13 C 1.53279 * 108.81312 * 343.27971 * 12 11 10 14 14 C 1.53144 * 109.60601 * 50.31284 * 13 12 11 15 15 C 1.50764 * 128.32442 * 180.02562 * 10 9 8 16 16 C 1.53004 * 109.47523 * 119.99757 * 2 1 3 17 17 H 1.08996 * 109.52294 * 180.02562 * 16 2 1 18 18 C 1.53041 * 109.49891 * 300.16548 * 16 2 1 19 19 C 1.53346 * 109.60691 * 181.32587 * 18 16 2 20 20 C 1.53197 * 109.14722 * 298.70820 * 19 18 16 21 21 N 1.46924 * 108.89567 * 54.57868 * 20 19 18 22 22 C 1.36933 * 120.63197 * 126.34022 * 21 20 19 23 23 H 1.07995 * 119.99809 * 332.53041 * 22 21 20 24 24 C 1.38814 * 120.00193 * 152.52492 * 22 21 20 25 25 N 1.31612 * 120.00114 * 159.33007 * 24 22 21 26 26 Si 1.86806 * 119.99760 * 339.33149 * 24 22 21 27 27 H 1.48501 * 109.46946 * 92.94630 * 26 24 22 28 28 H 1.48496 * 109.46962 * 212.95100 * 26 24 22 29 29 H 1.48503 * 109.47163 * 332.94864 * 26 24 22 30 30 C 1.46925 * 118.73691 * 306.32228 * 21 20 19 31 31 H 1.08997 * 109.47118 * 59.99911 * 1 2 3 32 32 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47062 * 299.99861 * 1 2 3 34 34 H 0.97001 * 119.99679 * 264.99520 * 4 2 1 35 35 H 1.07996 * 125.92337 * 179.97438 * 9 8 7 36 36 H 1.09007 * 109.72539 * 223.38584 * 12 11 10 37 37 H 1.08999 * 109.51629 * 103.05415 * 12 11 10 38 38 H 1.09005 * 109.45034 * 290.26884 * 13 12 11 39 39 H 1.09005 * 109.42536 * 170.33367 * 13 12 11 40 40 H 1.08999 * 109.51379 * 170.59320 * 14 13 12 41 41 H 1.09003 * 109.54963 * 50.47001 * 14 13 12 42 42 H 1.08997 * 109.73225 * 283.91579 * 15 10 9 43 43 H 1.09002 * 109.73004 * 44.55925 * 15 10 9 44 44 H 1.09005 * 109.45325 * 301.33561 * 18 16 2 45 45 H 1.08993 * 109.46240 * 61.30263 * 18 16 2 46 46 H 1.08996 * 109.68429 * 178.74618 * 19 18 16 47 47 H 1.08997 * 109.47922 * 58.54114 * 19 18 16 48 48 H 1.09007 * 109.58226 * 294.72254 * 20 19 18 49 49 H 1.08998 * 109.58746 * 174.43881 * 20 19 18 50 50 H 0.97001 * 120.00103 * 180.02562 * 25 24 22 51 51 H 1.09006 * 109.58897 * 173.39354 * 30 21 20 52 52 H 1.08995 * 109.59177 * 293.67653 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8573 1.1615 -2.4119 7 6 2.6388 -0.7131 -3.5606 8 7 2.9846 -1.9835 -3.6338 9 6 3.3772 -2.2593 -4.8782 10 6 3.2759 -1.1313 -5.6106 11 7 2.8089 -0.1565 -4.7906 12 6 2.5680 1.2289 -5.1997 13 6 3.3015 1.4891 -6.5201 14 6 2.9576 0.3859 -7.5251 15 6 3.6007 -0.9313 -7.0692 16 6 2.0401 -0.7212 1.2493 17 1 3.1300 -0.7213 1.2503 18 6 1.5269 -0.0026 2.4993 19 6 2.0639 -0.7039 3.7528 20 6 1.5535 -2.1481 3.7782 21 7 1.9182 -2.8039 2.5150 22 6 2.6066 -3.9876 2.5168 23 1 3.2587 -4.2317 3.3423 24 6 2.4663 -4.8737 1.4575 25 7 3.3880 -5.7870 1.2371 26 14 0.9693 -4.7698 0.3450 27 1 1.2799 -3.9076 -0.8235 28 1 0.6075 -6.1308 -0.1263 29 1 -0.1694 -4.1885 1.1003 30 6 1.5297 -2.1657 1.2499 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 3.7175 -3.2193 -5.2372 36 1 2.9416 1.9089 -4.4340 37 1 1.4985 1.3869 -5.3384 38 1 4.3770 1.4960 -6.3427 39 1 2.9937 2.4546 -6.9217 40 1 3.3414 0.6568 -8.5087 41 1 1.8756 0.2644 -7.5773 42 1 4.6814 -0.8787 -7.2016 43 1 3.1982 -1.7593 -7.6527 44 1 1.8683 1.0325 2.4888 45 1 0.4373 -0.0255 2.5097 46 1 1.7173 -0.1799 4.6435 47 1 3.1536 -0.7036 3.7308 48 1 0.4693 -2.1505 3.8915 49 1 2.0092 -2.6821 4.6120 50 1 3.2901 -6.4060 0.4967 51 1 1.9719 -2.7098 0.4153 52 1 0.4439 -2.1718 1.1558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025627515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:51 Heat of formation + Delta-G solvation = 36.349742 kcal Electronic energy + Delta-G solvation = -31956.852024 eV Core-core repulsion = 27957.300150 eV Total energy + Delta-G solvation = -3999.551875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.59946 -39.73649 -38.12855 -36.98550 -35.26548 -33.18905 -33.03148 -31.70319 -30.75177 -30.48549 -28.68260 -28.00822 -25.27428 -24.98012 -24.26694 -23.26075 -22.31419 -22.06676 -20.61218 -20.07575 -19.29476 -18.92101 -17.82368 -16.76706 -16.40702 -16.13814 -15.77646 -15.21559 -14.99766 -14.52990 -14.47352 -14.40619 -14.15592 -14.08462 -13.98943 -13.79726 -13.55631 -13.37376 -13.20528 -12.93699 -12.58918 -12.26739 -12.10656 -12.07327 -11.76795 -11.52646 -11.46176 -11.39927 -11.35781 -10.98183 -10.67657 -10.52662 -10.45966 -10.16595 -10.06803 -10.05844 -9.76463 -9.75059 -9.61842 -9.40650 -8.98834 -8.54894 -8.41743 -6.91199 -5.89893 -3.25570 1.34690 2.34222 2.56920 3.33598 3.40289 3.48052 3.54086 3.56076 4.10601 4.23792 4.32089 4.38302 4.50723 4.57986 4.83472 4.89809 5.00443 5.02258 5.12865 5.17547 5.24828 5.27247 5.30227 5.35631 5.41464 5.46062 5.50361 5.56625 5.57582 5.58211 5.70272 5.72376 5.85334 6.00386 6.06526 6.09480 6.17432 6.20770 6.30583 6.36431 6.44198 6.54239 6.59326 6.61735 6.65165 6.73484 6.77603 6.86107 7.01808 7.51534 7.88420 8.01157 8.22940 8.38194 8.99217 9.77281 10.15152 11.26048 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.003444 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.329115 B = 8128.195863 C = 9630.623613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.695 5.695 5 C 0.609 3.391 6 O -0.551 6.551 7 C 0.141 3.859 8 N -0.437 5.437 9 C -0.019 4.019 10 C -0.004 4.004 11 N -0.411 5.411 12 C 0.103 3.897 13 C -0.136 4.136 14 C -0.127 4.127 15 C -0.047 4.047 16 C -0.115 4.115 17 H 0.080 0.920 18 C -0.101 4.101 19 C -0.135 4.135 20 C 0.147 3.853 21 N -0.604 5.604 22 C -0.263 4.263 23 H 0.085 0.915 24 C 0.027 3.973 25 N -0.905 5.905 26 Si 0.875 3.125 27 H -0.281 1.281 28 H -0.303 1.303 29 H -0.273 1.273 30 C 0.131 3.869 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.417 0.583 35 H 0.178 0.822 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.021 0.979 49 H 0.062 0.938 50 H 0.263 0.737 51 H 0.069 0.931 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 15.738 -15.262 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.347 5.347 5 C 0.393 3.607 6 O -0.429 6.429 7 C -0.118 4.118 8 N -0.158 5.158 9 C -0.172 4.172 10 C -0.124 4.124 11 N -0.093 5.093 12 C -0.018 4.018 13 C -0.174 4.174 14 C -0.165 4.165 15 C -0.085 4.085 16 C -0.135 4.135 17 H 0.099 0.901 18 C -0.140 4.140 19 C -0.174 4.174 20 C 0.021 3.979 21 N -0.327 5.327 22 C -0.391 4.391 23 H 0.103 0.897 24 C -0.173 4.173 25 N -0.548 5.548 26 Si 0.705 3.295 27 H -0.208 1.208 28 H -0.232 1.232 29 H -0.198 1.198 30 C 0.005 3.995 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.255 0.745 35 H 0.195 0.805 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.039 0.961 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.087 0.913 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.165 16.052 -14.642 21.834 hybrid contribution -0.636 -0.088 -1.397 1.537 sum -2.801 15.964 -16.039 22.802 Atomic orbital electron populations 1.22292 0.95339 1.02740 1.02167 1.21116 0.94233 0.96855 0.83313 0.89433 1.45979 1.64807 1.15378 1.08522 1.16429 0.77495 0.85287 0.81482 1.90760 1.52265 1.14912 1.84985 1.22538 1.11356 0.90386 0.87471 1.70510 1.13361 1.10779 1.21182 1.22057 1.07229 0.98602 0.89332 1.21318 1.06465 0.89681 0.94928 1.44961 1.45861 1.10210 1.08235 1.22136 1.02095 0.79557 0.98028 1.21954 1.01374 1.00130 0.93900 1.21693 1.01508 0.94219 0.99049 1.20301 1.01614 0.98619 0.87938 1.21984 1.01541 0.97590 0.92420 0.90133 1.21488 1.00340 0.97872 0.94253 1.22054 1.01146 0.97949 0.96292 1.20944 0.96515 0.91169 0.89285 1.44304 1.66004 1.23149 0.99274 1.18910 1.19008 0.92992 1.08182 0.89726 1.25256 0.97695 0.96195 0.98111 1.69823 1.32685 1.21483 1.30819 0.87060 0.85642 0.75986 0.80774 1.20849 1.23155 1.19789 1.21451 0.97020 0.90714 0.90334 0.92574 0.91841 0.91012 0.74510 0.80525 0.87772 0.89375 0.90630 0.89252 0.90287 0.91242 0.89554 0.89033 0.92844 0.92003 0.92585 0.91976 0.96089 0.91994 0.92732 0.91284 0.95153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 8.79 37.16 0.33 -2.17 16 2 C 0.15 2.41 2.41 -67.93 -0.16 2.24 16 3 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 4 N -0.70 -12.33 4.99 -54.89 -0.27 -12.60 16 5 C 0.61 10.61 7.78 -12.53 -0.10 10.51 16 6 O -0.55 -9.74 14.91 5.27 0.08 -9.66 16 7 C 0.14 2.38 7.82 -154.86 -1.21 1.17 16 8 N -0.44 -7.82 10.92 -11.45 -0.12 -7.95 16 9 C -0.02 -0.27 11.82 -18.08 -0.21 -0.48 16 10 C 0.00 -0.05 6.57 -82.06 -0.54 -0.59 16 11 N -0.41 -5.52 3.14 -110.07 -0.35 -5.86 16 12 C 0.10 1.05 6.10 -3.92 -0.02 1.03 16 13 C -0.14 -0.91 5.93 -26.51 -0.16 -1.07 16 14 C -0.13 -0.77 5.97 -26.39 -0.16 -0.93 16 15 C -0.05 -0.34 6.31 -27.59 -0.17 -0.51 16 16 C -0.11 -2.01 2.33 -90.49 -0.21 -2.23 16 17 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 18 C -0.10 -1.54 4.77 -26.53 -0.13 -1.67 16 19 C -0.14 -2.18 6.11 -26.45 -0.16 -2.34 16 20 C 0.15 2.88 6.50 -3.71 -0.02 2.85 16 21 N -0.60 -14.34 2.77 -172.31 -0.48 -14.82 16 22 C -0.26 -7.39 10.03 -15.06 -0.15 -7.54 16 23 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 24 C 0.03 0.78 5.23 -17.43 -0.09 0.69 16 25 N -0.91 -28.04 13.97 55.49 0.78 -27.27 16 26 Si 0.88 22.70 24.35 -169.99 -4.14 18.56 16 27 H -0.28 -7.03 6.62 56.52 0.37 -6.65 16 28 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 29 H -0.27 -6.95 6.64 56.52 0.38 -6.58 16 30 C 0.13 2.81 2.99 -3.71 -0.01 2.80 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.03 6.32 -51.93 -0.33 0.70 16 33 H 0.07 0.93 6.46 -51.93 -0.34 0.60 16 34 H 0.42 8.15 6.65 -40.82 -0.27 7.88 16 35 H 0.18 2.04 8.06 -52.49 -0.42 1.61 16 36 H 0.10 1.15 7.28 -51.93 -0.38 0.77 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.89 6.50 -51.93 -0.34 0.56 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 50 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 51 H 0.07 1.65 3.10 -51.93 -0.16 1.49 16 52 H 0.03 0.66 5.11 -51.93 -0.27 0.39 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -33.84 390.01 -10.23 -44.07 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.41 Total: 7.90 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -3.19 Total: 1.76 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.45 Total: -68.50 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.14 Total: 18.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.84 -10.23 -44.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025627515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.418 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds