Wall clock time and date at job start Wed Apr 1 2020 05:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47369 * 2 1 4 4 N 1.46499 * 109.46933 * 240.00080 * 2 1 3 5 5 C 1.34770 * 120.00347 * 85.00002 * 4 2 1 6 6 O 1.21608 * 119.99934 * 359.97438 * 5 4 2 7 7 C 1.47409 * 120.00381 * 179.97438 * 5 4 2 8 8 N 1.31870 * 125.93424 * 0.02562 * 7 5 4 9 9 C 1.33370 * 109.15701 * 179.91185 * 8 7 5 10 10 C 1.34872 * 108.15797 * 359.97438 * 9 8 7 11 11 N 1.35674 * 107.37208 * 359.84283 * 10 9 8 12 12 C 1.46450 * 124.57524 * 179.48096 * 11 10 9 13 13 C 1.53279 * 108.81312 * 343.27971 * 12 11 10 14 14 C 1.53144 * 109.60601 * 50.31284 * 13 12 11 15 15 C 1.50764 * 128.32442 * 180.02562 * 10 9 8 16 16 C 1.53004 * 109.47523 * 119.99757 * 2 1 3 17 17 H 1.08996 * 109.52294 * 180.02562 * 16 2 1 18 18 C 1.53041 * 109.49891 * 300.16548 * 16 2 1 19 19 C 1.53346 * 109.60691 * 181.32587 * 18 16 2 20 20 C 1.53197 * 109.14722 * 298.70820 * 19 18 16 21 21 N 1.46924 * 108.89567 * 54.57868 * 20 19 18 22 22 C 1.36933 * 120.63197 * 126.34022 * 21 20 19 23 23 H 1.07995 * 119.99809 * 332.53041 * 22 21 20 24 24 C 1.38814 * 120.00193 * 152.52492 * 22 21 20 25 25 N 1.31612 * 120.00114 * 159.33007 * 24 22 21 26 26 Si 1.86806 * 119.99760 * 339.33149 * 24 22 21 27 27 H 1.48501 * 109.46946 * 92.94630 * 26 24 22 28 28 H 1.48496 * 109.46962 * 212.95100 * 26 24 22 29 29 H 1.48503 * 109.47163 * 332.94864 * 26 24 22 30 30 C 1.46925 * 118.73691 * 306.32228 * 21 20 19 31 31 H 1.08997 * 109.47118 * 59.99911 * 1 2 3 32 32 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47062 * 299.99861 * 1 2 3 34 34 H 0.97001 * 119.99679 * 264.99520 * 4 2 1 35 35 H 1.07996 * 125.92337 * 179.97438 * 9 8 7 36 36 H 1.09007 * 109.72539 * 223.38584 * 12 11 10 37 37 H 1.08999 * 109.51629 * 103.05415 * 12 11 10 38 38 H 1.09005 * 109.45034 * 290.26884 * 13 12 11 39 39 H 1.09005 * 109.42536 * 170.33367 * 13 12 11 40 40 H 1.08999 * 109.51379 * 170.59320 * 14 13 12 41 41 H 1.09003 * 109.54963 * 50.47001 * 14 13 12 42 42 H 1.08997 * 109.73225 * 283.91579 * 15 10 9 43 43 H 1.09002 * 109.73004 * 44.55925 * 15 10 9 44 44 H 1.09005 * 109.45325 * 301.33561 * 18 16 2 45 45 H 1.08993 * 109.46240 * 61.30263 * 18 16 2 46 46 H 1.08996 * 109.68429 * 178.74618 * 19 18 16 47 47 H 1.08997 * 109.47922 * 58.54114 * 19 18 16 48 48 H 1.09007 * 109.58226 * 294.72254 * 20 19 18 49 49 H 1.08998 * 109.58746 * 174.43881 * 20 19 18 50 50 H 0.97001 * 120.00103 * 180.02562 * 25 24 22 51 51 H 1.09006 * 109.58897 * 173.39354 * 30 21 20 52 52 H 1.08995 * 109.59177 * 293.67653 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8573 1.1615 -2.4119 7 6 2.6388 -0.7131 -3.5606 8 7 2.9846 -1.9835 -3.6338 9 6 3.3772 -2.2593 -4.8782 10 6 3.2759 -1.1313 -5.6106 11 7 2.8089 -0.1565 -4.7906 12 6 2.5680 1.2289 -5.1997 13 6 3.3015 1.4891 -6.5201 14 6 2.9576 0.3859 -7.5251 15 6 3.6007 -0.9313 -7.0692 16 6 2.0401 -0.7212 1.2493 17 1 3.1300 -0.7213 1.2503 18 6 1.5269 -0.0026 2.4993 19 6 2.0639 -0.7039 3.7528 20 6 1.5535 -2.1481 3.7782 21 7 1.9182 -2.8039 2.5150 22 6 2.6066 -3.9876 2.5168 23 1 3.2587 -4.2317 3.3423 24 6 2.4663 -4.8737 1.4575 25 7 3.3880 -5.7870 1.2371 26 14 0.9693 -4.7698 0.3450 27 1 1.2799 -3.9076 -0.8235 28 1 0.6075 -6.1308 -0.1263 29 1 -0.1694 -4.1885 1.1003 30 6 1.5297 -2.1657 1.2499 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 3.7175 -3.2193 -5.2372 36 1 2.9416 1.9089 -4.4340 37 1 1.4985 1.3869 -5.3384 38 1 4.3770 1.4960 -6.3427 39 1 2.9937 2.4546 -6.9217 40 1 3.3414 0.6568 -8.5087 41 1 1.8756 0.2644 -7.5773 42 1 4.6814 -0.8787 -7.2016 43 1 3.1982 -1.7593 -7.6527 44 1 1.8683 1.0325 2.4888 45 1 0.4373 -0.0255 2.5097 46 1 1.7173 -0.1799 4.6435 47 1 3.1536 -0.7036 3.7308 48 1 0.4693 -2.1505 3.8915 49 1 2.0092 -2.6821 4.6120 50 1 3.2901 -6.4060 0.4967 51 1 1.9719 -2.7098 0.4153 52 1 0.4439 -2.1718 1.1558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025627515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:50 Heat of formation + Delta-G solvation = 14.202191 kcal Electronic energy + Delta-G solvation = -31957.812414 eV Core-core repulsion = 27957.300150 eV Total energy + Delta-G solvation = -4000.512265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.64011 -41.08702 -39.60570 -37.75287 -36.76378 -34.87580 -33.97183 -33.23664 -32.37544 -31.59657 -29.98410 -29.04155 -27.16715 -26.02453 -25.28594 -24.58195 -23.82982 -22.95765 -22.00883 -21.34168 -20.56232 -20.00876 -19.02617 -18.67795 -17.58897 -17.33382 -17.27172 -16.62316 -16.19287 -15.93429 -15.61932 -15.45378 -15.19225 -15.13136 -15.07730 -14.96223 -14.89558 -14.78613 -14.50951 -14.27234 -13.99718 -13.80996 -13.64235 -13.30403 -13.06488 -12.87180 -12.61769 -12.52957 -12.17335 -12.07321 -11.99285 -11.98158 -11.93263 -11.61649 -11.55851 -11.43277 -11.27751 -11.22801 -11.15371 -10.80618 -10.65483 -10.31372 -9.46333 -8.89555 -8.17347 -5.47444 0.20116 1.28504 1.32038 1.37015 1.45688 1.46264 2.19479 2.24621 2.39907 3.02756 3.16707 3.33582 3.47436 3.56066 3.72514 3.75228 3.82156 3.84579 3.95595 4.10815 4.21575 4.25197 4.28766 4.30794 4.33737 4.47405 4.49543 4.53826 4.58833 4.69312 4.73755 4.79480 4.82583 4.84110 4.92990 4.94476 5.00050 5.06939 5.09767 5.11672 5.22323 5.24059 5.25378 5.26475 5.35305 5.38419 5.55543 5.60852 5.86313 5.87705 6.12945 6.17601 6.67539 6.92859 6.94077 7.63797 8.04317 9.02508 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.003444 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.329115 B = 8128.195863 C = 9630.623613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.099 0.901 4 N -0.704 5.704 5 C 0.608 3.392 6 O -0.559 6.559 7 C 0.101 3.899 8 N -0.479 5.479 9 C -0.050 4.050 10 C 0.020 3.980 11 N -0.408 5.408 12 C 0.095 3.905 13 C -0.129 4.129 14 C -0.123 4.123 15 C -0.047 4.047 16 C -0.103 4.103 17 H 0.060 0.940 18 C -0.098 4.098 19 C -0.126 4.126 20 C 0.138 3.862 21 N -0.620 5.620 22 C -0.248 4.248 23 H 0.053 0.947 24 C -0.028 4.028 25 N -0.953 5.953 26 Si 0.937 3.063 27 H -0.275 1.275 28 H -0.314 1.314 29 H -0.262 1.262 30 C 0.131 3.869 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.405 0.595 35 H 0.195 0.805 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.047 0.953 48 H 0.037 0.963 49 H 0.052 0.948 50 H 0.260 0.740 51 H 0.040 0.960 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 18.891 -17.129 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.116 0.884 4 N -0.354 5.354 5 C 0.394 3.606 6 O -0.439 6.439 7 C -0.156 4.156 8 N -0.201 5.201 9 C -0.203 4.203 10 C -0.101 4.101 11 N -0.089 5.089 12 C -0.025 4.025 13 C -0.166 4.166 14 C -0.161 4.161 15 C -0.085 4.085 16 C -0.124 4.124 17 H 0.079 0.921 18 C -0.136 4.136 19 C -0.165 4.165 20 C 0.013 3.987 21 N -0.344 5.344 22 C -0.378 4.378 23 H 0.071 0.929 24 C -0.223 4.223 25 N -0.599 5.599 26 Si 0.766 3.234 27 H -0.202 1.202 28 H -0.243 1.243 29 H -0.186 1.186 30 C 0.006 3.994 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.241 0.759 35 H 0.212 0.788 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.112 0.888 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.477 19.287 -16.480 25.607 hybrid contribution -0.156 -1.049 -0.804 1.331 sum -3.633 18.238 -17.285 25.389 Atomic orbital electron populations 1.22256 0.94022 1.02104 1.03505 1.21183 0.95156 0.96784 0.82066 0.88353 1.46105 1.65202 1.14839 1.09291 1.16543 0.77179 0.85228 0.81678 1.90728 1.52874 1.15012 1.85237 1.22374 1.13958 0.90679 0.88633 1.70402 1.14373 1.11904 1.23404 1.22550 1.08412 1.00473 0.88822 1.22082 1.03046 0.88318 0.96648 1.45230 1.44794 1.11532 1.07345 1.22410 1.02841 0.77643 0.99636 1.21992 1.00852 1.01799 0.91971 1.21724 1.01320 0.92937 1.00112 1.20595 1.03048 1.00327 0.84527 1.21820 1.00284 0.95451 0.94855 0.92134 1.21529 1.01270 0.98898 0.91871 1.21965 1.00266 0.95688 0.98565 1.21192 0.97438 0.93043 0.87000 1.44470 1.65984 1.22274 1.01684 1.18872 1.17871 0.94462 1.06578 0.92918 1.25805 0.99951 0.96458 1.00115 1.69946 1.34601 1.23185 1.32181 0.86063 0.82623 0.75257 0.79446 1.20158 1.24307 1.18608 1.21421 0.97028 0.92682 0.88287 0.92571 0.93350 0.88328 0.75856 0.78805 0.89077 0.89120 0.90601 0.86638 0.87249 0.91613 0.87674 0.87066 0.89729 0.90339 0.88823 0.93393 0.94512 0.92945 0.93067 0.94178 0.94510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 8.79 71.98 0.63 -3.84 16 2 C 0.15 4.73 2.41 44.99 0.11 4.84 16 3 H 0.10 2.88 7.58 -2.38 -0.02 2.87 16 4 N -0.70 -25.43 4.99 -445.82 -2.23 -27.66 16 5 C 0.61 21.62 7.78 86.66 0.67 22.30 16 6 O -0.56 -19.73 14.91 -4.05 -0.06 -19.79 16 7 C 0.10 3.48 7.82 136.40 1.07 4.55 16 8 N -0.48 -17.79 10.92 -190.13 -2.08 -19.87 16 9 C -0.05 -1.43 11.82 83.69 0.99 -0.44 16 10 C 0.02 0.46 6.57 41.21 0.27 0.73 16 11 N -0.41 -10.77 3.14 -502.14 -1.58 -12.35 16 12 C 0.10 1.83 6.10 86.48 0.53 2.35 16 13 C -0.13 -1.33 5.93 30.74 0.18 -1.15 16 14 C -0.12 -1.02 5.97 30.81 0.18 -0.84 16 15 C -0.05 -0.53 6.31 30.04 0.19 -0.35 16 16 C -0.10 -3.52 2.33 -10.71 -0.03 -3.55 16 17 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 18 C -0.10 -2.63 4.77 30.72 0.15 -2.48 16 19 C -0.13 -3.71 6.11 30.78 0.19 -3.52 16 20 C 0.14 5.22 6.50 86.36 0.56 5.78 16 21 N -0.62 -29.57 2.77 -699.08 -1.94 -31.51 16 22 C -0.25 -14.46 10.03 84.03 0.84 -13.61 16 23 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 24 C -0.03 -1.70 5.23 84.86 0.44 -1.26 16 25 N -0.95 -61.83 13.97 21.65 0.30 -61.52 16 26 Si 0.94 48.84 24.35 68.60 1.67 50.51 16 27 H -0.27 -13.90 6.62 99.48 0.66 -13.24 16 28 H -0.31 -16.75 7.11 99.48 0.71 -16.04 16 29 H -0.26 -12.96 6.64 99.48 0.66 -12.30 16 30 C 0.13 5.60 2.99 86.36 0.26 5.86 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.49 6.32 -2.39 -0.02 1.47 16 33 H 0.10 2.18 6.46 -2.39 -0.02 2.16 16 34 H 0.41 16.57 6.65 -92.71 -0.62 15.95 16 35 H 0.20 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.09 1.98 7.28 -2.38 -0.02 1.96 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 39 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 1.83 8.14 -2.38 -0.02 1.82 16 45 H 0.08 1.90 6.50 -2.39 -0.02 1.89 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 49 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 50 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 51 H 0.04 1.96 3.10 -2.38 -0.01 1.95 16 52 H 0.04 1.55 5.11 -2.39 -0.01 1.53 16 Total: -1.00 -78.60 390.01 1.56 -77.04 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.22 Total: 29.75 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 7.24 Total: 15.39 kcal Atomic # 7 Polarization: -145.39 SS G_CDS: -7.51 Total: -152.90 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.79 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.67 Total: 50.51 kcal Total: -78.60 1.56 -77.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025627515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.244 kcal (2) G-P(sol) polarization free energy of solvation -78.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds