Wall clock time and date at job start Wed Apr 1 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47565 * 2 1 4 4 N 1.46507 * 109.47056 * 239.99953 * 2 1 3 5 5 C 1.34781 * 119.99404 * 85.00442 * 4 2 1 6 6 O 1.21508 * 120.00297 * 359.97438 * 5 4 2 7 7 C 1.48186 * 119.99690 * 180.02562 * 5 4 2 8 8 C 1.39035 * 119.68980 * 179.72605 * 7 5 4 9 9 C 1.39456 * 118.95389 * 179.77239 * 8 7 5 10 10 N 1.39192 * 120.82870 * 180.21587 * 9 8 7 11 11 C 1.46498 * 120.00010 * 180.28239 * 10 9 8 12 12 C 1.46502 * 120.00145 * 0.27452 * 10 9 8 13 13 C 1.39409 * 118.33716 * 0.48697 * 9 8 7 14 14 C 1.38234 * 119.26590 * 359.75136 * 13 9 8 15 15 N 1.31652 * 120.99075 * 359.97438 * 14 13 9 16 16 C 1.53004 * 109.47223 * 120.00578 * 2 1 3 17 17 H 1.08999 * 109.52563 * 180.02562 * 16 2 1 18 18 C 1.53045 * 109.49244 * 300.15725 * 16 2 1 19 19 C 1.53357 * 109.60480 * 181.32342 * 18 16 2 20 20 C 1.53193 * 109.14904 * 298.71711 * 19 18 16 21 21 N 1.46926 * 108.89427 * 54.57684 * 20 19 18 22 22 C 1.36939 * 120.62800 * 126.34279 * 21 20 19 23 23 H 1.07998 * 119.99995 * 332.51498 * 22 21 20 24 24 C 1.38814 * 120.00009 * 152.52132 * 22 21 20 25 25 N 1.31608 * 120.00289 * 159.32820 * 24 22 21 26 26 Si 1.86806 * 119.99760 * 339.32554 * 24 22 21 27 27 H 1.48501 * 109.46946 * 92.94630 * 26 24 22 28 28 H 1.48496 * 109.46962 * 212.95100 * 26 24 22 29 29 H 1.48503 * 109.47163 * 332.94864 * 26 24 22 30 30 C 1.46926 * 118.73783 * 306.32051 * 21 20 19 31 31 H 1.08997 * 109.47118 * 59.99552 * 1 2 3 32 32 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47328 * 299.99970 * 1 2 3 34 34 H 0.96994 * 120.00507 * 265.00024 * 4 2 1 35 35 H 1.08001 * 120.51946 * 0.02562 * 8 7 5 36 36 H 1.09002 * 109.47467 * 89.99602 * 11 10 9 37 37 H 1.09005 * 109.46882 * 210.00199 * 11 10 9 38 38 H 1.09004 * 109.46593 * 329.99584 * 11 10 9 39 39 H 1.09002 * 109.46956 * 90.00314 * 12 10 9 40 40 H 1.08993 * 109.47511 * 209.99895 * 12 10 9 41 41 H 1.09007 * 109.47229 * 330.00556 * 12 10 9 42 42 H 1.08002 * 120.37331 * 179.72647 * 13 9 8 43 43 H 1.08001 * 119.50390 * 179.97438 * 14 13 9 44 44 H 1.08995 * 109.46432 * 301.34019 * 18 16 2 45 45 H 1.09001 * 109.45552 * 61.31559 * 18 16 2 46 46 H 1.08994 * 109.68096 * 178.75125 * 19 18 16 47 47 H 1.09006 * 109.47024 * 58.55060 * 19 18 16 48 48 H 1.09007 * 109.58411 * 294.71625 * 20 19 18 49 49 H 1.08998 * 109.58021 * 174.43733 * 20 19 18 50 50 H 0.97001 * 120.00278 * 180.02562 * 25 24 22 51 51 H 1.09001 * 109.58513 * 173.40197 * 30 21 20 52 52 H 1.09003 * 109.58562 * 293.67760 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8577 1.1607 -2.4118 7 6 2.6404 -0.7168 -3.5673 8 6 2.7654 -0.0183 -4.7629 9 6 3.2358 -0.6897 -5.8911 10 7 3.3803 -0.0274 -7.1067 11 6 3.8702 -0.7519 -8.2819 12 6 3.0423 1.3943 -7.2111 13 6 3.5522 -2.0422 -5.7722 14 6 3.3959 -2.6678 -4.5495 15 7 2.9546 -2.0056 -3.5007 16 6 2.0400 -0.7214 1.2492 17 1 3.1300 -0.7215 1.2503 18 6 1.5269 -0.0027 2.4992 19 6 2.0637 -0.7042 3.7528 20 6 1.5533 -2.1484 3.7781 21 7 1.9180 -2.8040 2.5148 22 6 2.6065 -3.9878 2.5166 23 1 3.2586 -4.2320 3.3421 24 6 2.4662 -4.8739 1.4573 25 7 3.3877 -5.7872 1.2368 26 14 0.9692 -4.7699 0.3447 27 1 1.2798 -3.9076 -0.8237 28 1 0.6073 -6.1308 -0.1266 29 1 -0.1696 -4.1886 1.1001 30 6 1.5297 -2.1657 1.2497 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.2490 -1.6318 -1.1527 35 1 2.5061 1.0288 -4.8160 36 1 3.0262 -1.1795 -8.8232 37 1 4.4094 -0.0646 -8.9339 38 1 4.5397 -1.5509 -7.9631 39 1 3.9241 1.9948 -6.9872 40 1 2.7010 1.6134 -8.2228 41 1 2.2505 1.6327 -6.5008 42 1 3.9149 -2.5952 -6.6260 43 1 3.6394 -3.7156 -4.4532 44 1 1.8682 1.0324 2.4889 45 1 0.4372 -0.0257 2.5096 46 1 1.7171 -0.1802 4.6435 47 1 3.1535 -0.7039 3.7308 48 1 0.4691 -2.1508 3.8913 49 1 2.0090 -2.6824 4.6119 50 1 3.2899 -6.4062 0.4964 51 1 1.9718 -2.7098 0.4151 52 1 0.4437 -2.1718 1.1556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025630147.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:49 Heat of formation + Delta-G solvation = 35.009399 kcal Electronic energy + Delta-G solvation = -31467.756864 eV Core-core repulsion = 27468.146868 eV Total energy + Delta-G solvation = -3999.609996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.70059 -39.47222 -38.10810 -37.08630 -35.18217 -33.06448 -31.97118 -31.42616 -30.98746 -30.48049 -28.76039 -28.30738 -25.76695 -25.25819 -24.74023 -23.46460 -22.48411 -22.12682 -20.47963 -19.95879 -18.96158 -18.16068 -17.11237 -16.72584 -16.35465 -15.77220 -15.58444 -15.43075 -15.19851 -14.88398 -14.51947 -14.42155 -14.19601 -14.01803 -13.82214 -13.55326 -13.40080 -13.18808 -13.03465 -12.86755 -12.71365 -12.53249 -12.44982 -12.07931 -12.05325 -11.71851 -11.60726 -11.35092 -10.94229 -10.82910 -10.65578 -10.49275 -10.43179 -10.07107 -10.04470 -9.74955 -9.59888 -9.43876 -9.38060 -9.27150 -8.78031 -8.54516 -7.95823 -6.90327 -5.90125 -3.25374 0.71127 1.36166 2.62998 2.89567 3.31723 3.39417 3.53596 3.55444 3.97471 4.28595 4.53266 4.54752 4.57752 4.80436 4.86737 4.90603 4.91909 5.03649 5.17723 5.20586 5.24470 5.28803 5.30753 5.34221 5.34715 5.49748 5.56905 5.59618 5.63740 5.69363 5.75740 5.79959 5.90882 6.05211 6.10883 6.14651 6.24194 6.33968 6.39047 6.42182 6.48214 6.64208 6.65620 6.70801 6.75598 6.77541 6.82499 6.97377 7.04396 7.67624 8.00442 8.01518 8.38024 8.39020 8.99532 9.77397 10.15782 11.25836 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.003272 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.375905 B = 8556.233210 C =10131.930857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.146 3.854 3 H 0.086 0.914 4 N -0.700 5.700 5 C 0.571 3.429 6 O -0.544 6.544 7 C 0.121 3.879 8 C -0.189 4.189 9 C 0.239 3.761 10 N -0.629 5.629 11 C 0.091 3.909 12 C 0.088 3.912 13 C -0.235 4.235 14 C 0.143 3.857 15 N -0.494 5.494 16 C -0.114 4.114 17 H 0.079 0.921 18 C -0.102 4.102 19 C -0.135 4.135 20 C 0.147 3.853 21 N -0.605 5.605 22 C -0.261 4.261 23 H 0.085 0.915 24 C 0.026 3.974 25 N -0.907 5.907 26 Si 0.875 3.125 27 H -0.280 1.280 28 H -0.304 1.304 29 H -0.273 1.273 30 C 0.131 3.869 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.416 0.584 35 H 0.145 0.855 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.137 0.863 43 H 0.163 0.837 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.021 0.979 49 H 0.061 0.939 50 H 0.262 0.738 51 H 0.070 0.930 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 13.067 -16.144 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.041 3.959 3 H 0.104 0.896 4 N -0.351 5.351 5 C 0.356 3.644 6 O -0.422 6.422 7 C -0.017 4.017 8 C -0.215 4.215 9 C 0.129 3.871 10 N -0.340 5.340 11 C -0.052 4.052 12 C -0.055 4.055 13 C -0.260 4.260 14 C -0.016 4.016 15 N -0.209 5.209 16 C -0.135 4.135 17 H 0.098 0.902 18 C -0.140 4.140 19 C -0.174 4.174 20 C 0.021 3.979 21 N -0.328 5.328 22 C -0.389 4.389 23 H 0.102 0.898 24 C -0.173 4.173 25 N -0.549 5.549 26 Si 0.705 3.295 27 H -0.207 1.207 28 H -0.233 1.233 29 H -0.198 1.198 30 C 0.005 3.995 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.254 0.746 35 H 0.163 0.837 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.154 0.846 43 H 0.180 0.820 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.039 0.961 49 H 0.080 0.920 50 H 0.072 0.928 51 H 0.088 0.912 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.333 13.417 -15.589 20.611 hybrid contribution -0.518 -0.180 -1.694 1.780 sum -1.850 13.238 -17.283 21.849 Atomic orbital electron populations 1.22284 0.95499 1.02597 1.02099 1.21087 0.94157 0.96907 0.83734 0.89572 1.46151 1.64660 1.15400 1.08901 1.17906 0.77792 0.85926 0.82823 1.90723 1.51338 1.15175 1.84943 1.20920 0.97137 0.90374 0.93268 1.21544 1.06327 1.02132 0.91539 1.17942 0.91854 0.91495 0.85788 1.46255 1.70742 1.09811 1.07219 1.21702 0.99090 0.97332 0.87046 1.21737 1.00881 0.80172 1.02672 1.21822 1.09720 0.93759 1.00681 1.22574 0.92124 0.99927 0.86937 1.67691 1.13285 1.07539 1.32340 1.21965 1.01460 0.97507 0.92539 0.90225 1.21494 1.00328 0.97893 0.94289 1.22055 1.01126 0.97927 0.96328 1.20941 0.96505 0.91192 0.89265 1.44317 1.66011 1.23140 0.99327 1.18920 1.18873 0.92970 1.08120 0.89753 1.25254 0.97732 0.96206 0.98146 1.69830 1.32730 1.21533 1.30854 0.87059 0.85696 0.75850 0.80862 1.20734 1.23251 1.19803 1.21445 0.97003 0.90795 0.90243 0.92566 0.91958 0.91173 0.74560 0.83740 0.92989 0.91187 0.90984 0.92853 0.91170 0.90810 0.84566 0.82020 0.92852 0.92034 0.92622 0.91998 0.96100 0.92032 0.92810 0.91246 0.95185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 8.79 37.16 0.33 -2.24 16 2 C 0.15 2.42 2.41 -67.93 -0.16 2.26 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 4 N -0.70 -12.56 4.99 -54.64 -0.27 -12.83 16 5 C 0.57 10.11 7.78 -12.17 -0.09 10.02 16 6 O -0.54 -10.20 15.98 5.36 0.09 -10.12 16 7 C 0.12 1.97 6.75 -83.05 -0.56 1.41 16 8 C -0.19 -2.60 8.79 -38.83 -0.34 -2.94 16 9 C 0.24 2.78 6.57 -83.63 -0.55 2.23 16 10 N -0.63 -5.55 3.40 -187.36 -0.64 -6.18 16 11 C 0.09 0.53 10.22 59.85 0.61 1.14 16 12 C 0.09 0.61 10.22 59.85 0.61 1.23 16 13 C -0.23 -2.58 9.27 -39.15 -0.36 -2.94 16 14 C 0.14 1.89 11.17 -17.63 -0.20 1.70 16 15 N -0.49 -8.20 9.54 -9.89 -0.09 -8.30 16 16 C -0.11 -2.04 2.33 -90.50 -0.21 -2.25 16 17 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 18 C -0.10 -1.58 4.78 -26.52 -0.13 -1.71 16 19 C -0.14 -2.20 6.11 -26.45 -0.16 -2.36 16 20 C 0.15 2.90 6.50 -3.71 -0.02 2.87 16 21 N -0.60 -14.38 2.77 -172.32 -0.48 -14.85 16 22 C -0.26 -7.31 10.03 -15.06 -0.15 -7.46 16 23 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 24 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 25 N -0.91 -27.75 13.97 55.49 0.78 -26.98 16 26 Si 0.88 22.43 24.35 -169.99 -4.14 18.29 16 27 H -0.28 -6.85 6.62 56.52 0.37 -6.48 16 28 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 29 H -0.27 -6.93 6.64 56.52 0.38 -6.56 16 30 C 0.13 2.83 2.99 -3.72 -0.01 2.82 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.03 6.32 -51.93 -0.33 0.70 16 33 H 0.07 0.94 6.46 -51.93 -0.34 0.61 16 34 H 0.42 8.10 6.30 -40.82 -0.26 7.84 16 35 H 0.14 1.87 5.85 -52.49 -0.31 1.57 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 38 H 0.07 0.39 6.25 -51.93 -0.32 0.07 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 41 H 0.07 0.56 6.25 -51.93 -0.32 0.24 16 42 H 0.14 1.09 6.26 -52.49 -0.33 0.76 16 43 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 50 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 51 H 0.07 1.65 3.10 -51.93 -0.16 1.49 16 52 H 0.03 0.66 5.11 -51.93 -0.27 0.39 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -33.70 394.89 -8.33 -42.03 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.03 Total: 8.57 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.50 Total: 4.43 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -0.71 Total: -69.14 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.70 -8.33 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025630147.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.039 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds