Wall clock time and date at job start Wed Apr 1 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47565 * 2 1 4 4 N 1.46507 * 109.47056 * 239.99953 * 2 1 3 5 5 C 1.34781 * 119.99404 * 85.00442 * 4 2 1 6 6 O 1.21508 * 120.00297 * 359.97438 * 5 4 2 7 7 C 1.48186 * 119.99690 * 180.02562 * 5 4 2 8 8 C 1.39035 * 119.68980 * 179.72605 * 7 5 4 9 9 C 1.39456 * 118.95389 * 179.77239 * 8 7 5 10 10 N 1.39192 * 120.82870 * 180.21587 * 9 8 7 11 11 C 1.46498 * 120.00010 * 180.28239 * 10 9 8 12 12 C 1.46502 * 120.00145 * 0.27452 * 10 9 8 13 13 C 1.39409 * 118.33716 * 0.48697 * 9 8 7 14 14 C 1.38234 * 119.26590 * 359.75136 * 13 9 8 15 15 N 1.31652 * 120.99075 * 359.97438 * 14 13 9 16 16 C 1.53004 * 109.47223 * 120.00578 * 2 1 3 17 17 H 1.08999 * 109.52563 * 180.02562 * 16 2 1 18 18 C 1.53045 * 109.49244 * 300.15725 * 16 2 1 19 19 C 1.53357 * 109.60480 * 181.32342 * 18 16 2 20 20 C 1.53193 * 109.14904 * 298.71711 * 19 18 16 21 21 N 1.46926 * 108.89427 * 54.57684 * 20 19 18 22 22 C 1.36939 * 120.62800 * 126.34279 * 21 20 19 23 23 H 1.07998 * 119.99995 * 332.51498 * 22 21 20 24 24 C 1.38814 * 120.00009 * 152.52132 * 22 21 20 25 25 N 1.31608 * 120.00289 * 159.32820 * 24 22 21 26 26 Si 1.86806 * 119.99760 * 339.32554 * 24 22 21 27 27 H 1.48501 * 109.46946 * 92.94630 * 26 24 22 28 28 H 1.48496 * 109.46962 * 212.95100 * 26 24 22 29 29 H 1.48503 * 109.47163 * 332.94864 * 26 24 22 30 30 C 1.46926 * 118.73783 * 306.32051 * 21 20 19 31 31 H 1.08997 * 109.47118 * 59.99552 * 1 2 3 32 32 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47328 * 299.99970 * 1 2 3 34 34 H 0.96994 * 120.00507 * 265.00024 * 4 2 1 35 35 H 1.08001 * 120.51946 * 0.02562 * 8 7 5 36 36 H 1.09002 * 109.47467 * 89.99602 * 11 10 9 37 37 H 1.09005 * 109.46882 * 210.00199 * 11 10 9 38 38 H 1.09004 * 109.46593 * 329.99584 * 11 10 9 39 39 H 1.09002 * 109.46956 * 90.00314 * 12 10 9 40 40 H 1.08993 * 109.47511 * 209.99895 * 12 10 9 41 41 H 1.09007 * 109.47229 * 330.00556 * 12 10 9 42 42 H 1.08002 * 120.37331 * 179.72647 * 13 9 8 43 43 H 1.08001 * 119.50390 * 179.97438 * 14 13 9 44 44 H 1.08995 * 109.46432 * 301.34019 * 18 16 2 45 45 H 1.09001 * 109.45552 * 61.31559 * 18 16 2 46 46 H 1.08994 * 109.68096 * 178.75125 * 19 18 16 47 47 H 1.09006 * 109.47024 * 58.55060 * 19 18 16 48 48 H 1.09007 * 109.58411 * 294.71625 * 20 19 18 49 49 H 1.08998 * 109.58021 * 174.43733 * 20 19 18 50 50 H 0.97001 * 120.00278 * 180.02562 * 25 24 22 51 51 H 1.09001 * 109.58513 * 173.40197 * 30 21 20 52 52 H 1.09003 * 109.58562 * 293.67760 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8577 1.1607 -2.4118 7 6 2.6404 -0.7168 -3.5673 8 6 2.7654 -0.0183 -4.7629 9 6 3.2358 -0.6897 -5.8911 10 7 3.3803 -0.0274 -7.1067 11 6 3.8702 -0.7519 -8.2819 12 6 3.0423 1.3943 -7.2111 13 6 3.5522 -2.0422 -5.7722 14 6 3.3959 -2.6678 -4.5495 15 7 2.9546 -2.0056 -3.5007 16 6 2.0400 -0.7214 1.2492 17 1 3.1300 -0.7215 1.2503 18 6 1.5269 -0.0027 2.4992 19 6 2.0637 -0.7042 3.7528 20 6 1.5533 -2.1484 3.7781 21 7 1.9180 -2.8040 2.5148 22 6 2.6065 -3.9878 2.5166 23 1 3.2586 -4.2320 3.3421 24 6 2.4662 -4.8739 1.4573 25 7 3.3877 -5.7872 1.2368 26 14 0.9692 -4.7699 0.3447 27 1 1.2798 -3.9076 -0.8237 28 1 0.6073 -6.1308 -0.1266 29 1 -0.1696 -4.1886 1.1001 30 6 1.5297 -2.1657 1.2497 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.2490 -1.6318 -1.1527 35 1 2.5061 1.0288 -4.8160 36 1 3.0262 -1.1795 -8.8232 37 1 4.4094 -0.0646 -8.9339 38 1 4.5397 -1.5509 -7.9631 39 1 3.9241 1.9948 -6.9872 40 1 2.7010 1.6134 -8.2228 41 1 2.2505 1.6327 -6.5008 42 1 3.9149 -2.5952 -6.6260 43 1 3.6394 -3.7156 -4.4532 44 1 1.8682 1.0324 2.4889 45 1 0.4372 -0.0257 2.5096 46 1 1.7171 -0.1802 4.6435 47 1 3.1535 -0.7039 3.7308 48 1 0.4691 -2.1508 3.8913 49 1 2.0090 -2.6824 4.6119 50 1 3.2899 -6.4062 0.4964 51 1 1.9718 -2.7098 0.4151 52 1 0.4437 -2.1718 1.1556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025630147.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:48 Heat of formation + Delta-G solvation = 11.956557 kcal Electronic energy + Delta-G solvation = -31468.756510 eV Core-core repulsion = 27468.146868 eV Total energy + Delta-G solvation = -4000.609643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.79849 -40.72441 -39.54404 -37.91715 -36.71665 -34.83470 -33.30544 -32.58051 -32.32623 -31.91655 -29.83238 -29.22425 -27.14767 -26.58962 -25.93414 -24.79483 -23.95233 -23.20319 -21.89970 -21.20543 -20.48584 -19.22192 -18.70503 -18.06853 -17.58938 -17.08441 -16.80241 -16.43426 -16.32627 -16.09694 -15.91678 -15.60567 -15.39782 -15.30968 -15.07879 -14.97449 -14.89165 -14.60700 -14.33263 -13.97126 -13.73752 -13.60773 -13.47315 -13.33393 -13.27751 -13.10250 -12.84041 -12.58813 -12.50067 -12.35871 -12.08749 -11.96723 -11.67059 -11.60472 -11.52991 -11.42900 -11.23589 -11.15869 -10.62381 -10.52113 -10.35967 -10.08938 -8.87372 -8.70745 -8.14497 -5.44965 -0.35063 0.39205 1.32929 1.40373 1.48758 1.67879 1.88023 2.16478 2.42675 2.89249 3.05336 3.15749 3.35681 3.66447 3.78719 3.83399 3.87657 3.98573 4.08998 4.11906 4.26243 4.27617 4.33936 4.36370 4.39806 4.47685 4.51979 4.56435 4.62689 4.70886 4.73126 4.74340 4.77545 4.82001 4.87031 4.89869 4.92938 4.96683 5.02134 5.11038 5.14470 5.24403 5.28108 5.37851 5.42638 5.51137 5.61979 5.89999 6.09106 6.15418 6.19634 6.33379 6.85082 6.95288 7.09776 7.65913 8.06850 9.05415 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.003272 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.375905 B = 8556.233210 C =10131.930857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 H 0.094 0.906 4 N -0.707 5.707 5 C 0.569 3.431 6 O -0.561 6.561 7 C 0.094 3.906 8 C -0.193 4.193 9 C 0.240 3.760 10 N -0.626 5.626 11 C 0.083 3.917 12 C 0.082 3.918 13 C -0.221 4.221 14 C 0.128 3.872 15 N -0.534 5.534 16 C -0.103 4.103 17 H 0.060 0.940 18 C -0.099 4.099 19 C -0.126 4.126 20 C 0.138 3.862 21 N -0.620 5.620 22 C -0.250 4.250 23 H 0.052 0.948 24 C -0.028 4.028 25 N -0.953 5.953 26 Si 0.937 3.063 27 H -0.269 1.269 28 H -0.313 1.313 29 H -0.266 1.266 30 C 0.131 3.869 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.407 0.593 35 H 0.146 0.854 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.171 0.829 43 H 0.178 0.822 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.047 0.953 48 H 0.036 0.964 49 H 0.052 0.948 50 H 0.261 0.739 51 H 0.043 0.957 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 15.347 -17.957 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 H 0.112 0.888 4 N -0.357 5.357 5 C 0.355 3.645 6 O -0.440 6.440 7 C -0.043 4.043 8 C -0.219 4.219 9 C 0.127 3.873 10 N -0.336 5.336 11 C -0.059 4.059 12 C -0.061 4.061 13 C -0.246 4.246 14 C -0.030 4.030 15 N -0.250 5.250 16 C -0.123 4.123 17 H 0.078 0.922 18 C -0.137 4.137 19 C -0.165 4.165 20 C 0.014 3.986 21 N -0.344 5.344 22 C -0.379 4.379 23 H 0.070 0.930 24 C -0.223 4.223 25 N -0.599 5.599 26 Si 0.766 3.234 27 H -0.195 1.195 28 H -0.242 1.242 29 H -0.191 1.191 30 C 0.006 3.994 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.244 0.756 35 H 0.164 0.836 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.188 0.812 43 H 0.195 0.805 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.066 0.934 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.061 0.939 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.447 15.763 -17.416 23.617 hybrid contribution -0.085 -0.849 -1.176 1.453 sum -2.531 14.914 -18.592 23.969 Atomic orbital electron populations 1.22245 0.94207 1.02048 1.03326 1.21144 0.95082 0.96755 0.82685 0.88834 1.46267 1.64892 1.14969 1.09563 1.18201 0.77273 0.85812 0.83236 1.90686 1.52298 1.15727 1.85338 1.20785 0.99213 0.90812 0.93473 1.21581 1.06546 1.02203 0.91618 1.18058 0.91056 0.91854 0.86360 1.46584 1.69533 1.10577 1.06866 1.21963 0.99793 0.97945 0.86162 1.21902 1.00897 0.79262 1.03998 1.22087 1.08126 0.93599 1.00785 1.22946 0.92130 1.00684 0.87260 1.67596 1.15122 1.08020 1.34244 1.21803 1.00213 0.95507 0.94821 0.92190 1.21533 1.01219 0.98865 0.92041 1.21966 1.00258 0.95738 0.98508 1.21181 0.97381 0.93005 0.87081 1.44475 1.66001 1.22308 1.01652 1.18870 1.17914 0.94498 1.06639 0.93040 1.25808 0.99978 0.96401 1.00119 1.69950 1.34571 1.23138 1.32210 0.86054 0.82400 0.75282 0.79637 1.19521 1.24232 1.19065 1.21416 0.96983 0.92630 0.88328 0.92692 0.93269 0.88597 0.75619 0.83595 0.91964 0.89088 0.90383 0.92319 0.88561 0.91848 0.81180 0.80537 0.89915 0.90442 0.88916 0.93383 0.94598 0.92946 0.92994 0.93881 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 8.79 71.98 0.63 -3.98 16 2 C 0.15 4.74 2.41 44.99 0.11 4.85 16 3 H 0.09 2.90 7.58 -2.39 -0.02 2.88 16 4 N -0.71 -25.67 4.99 -445.07 -2.22 -27.89 16 5 C 0.57 20.49 7.78 86.89 0.68 21.17 16 6 O -0.56 -21.12 15.98 -3.74 -0.06 -21.18 16 7 C 0.09 3.12 6.75 41.83 0.28 3.40 16 8 C -0.19 -5.26 8.79 22.75 0.20 -5.06 16 9 C 0.24 5.20 6.57 38.55 0.25 5.45 16 10 N -0.63 -9.40 3.40 -746.69 -2.54 -11.93 16 11 C 0.08 0.67 10.22 127.77 1.31 1.98 16 12 C 0.08 0.95 10.22 127.77 1.31 2.25 16 13 C -0.22 -4.46 9.27 22.55 0.21 -4.25 16 14 C 0.13 3.34 11.17 84.72 0.95 4.28 16 15 N -0.53 -18.13 9.54 -185.21 -1.77 -19.90 16 16 C -0.10 -3.56 2.33 -10.72 -0.03 -3.59 16 17 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 18 C -0.10 -2.73 4.78 30.73 0.15 -2.58 16 19 C -0.13 -3.77 6.11 30.78 0.19 -3.58 16 20 C 0.14 5.27 6.50 86.36 0.56 5.83 16 21 N -0.62 -29.56 2.77 -699.10 -1.94 -31.49 16 22 C -0.25 -14.44 10.03 84.03 0.84 -13.60 16 23 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 24 C -0.03 -1.66 5.23 84.86 0.44 -1.22 16 25 N -0.95 -60.69 13.97 21.65 0.30 -60.39 16 26 Si 0.94 47.85 24.35 68.60 1.67 49.52 16 27 H -0.27 -13.11 6.62 99.48 0.66 -12.45 16 28 H -0.31 -16.30 7.11 99.48 0.71 -15.60 16 29 H -0.27 -13.09 6.64 99.48 0.66 -12.43 16 30 C 0.13 5.63 2.99 86.36 0.26 5.88 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.54 6.32 -2.38 -0.02 1.53 16 33 H 0.10 2.23 6.46 -2.39 -0.02 2.22 16 34 H 0.41 16.34 6.30 -92.71 -0.58 15.76 16 35 H 0.15 3.79 5.85 -2.91 -0.02 3.78 16 36 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.09 0.40 8.07 -2.38 -0.02 0.38 16 38 H 0.08 0.56 6.25 -2.38 -0.01 0.54 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.10 0.63 8.07 -2.39 -0.02 0.61 16 41 H 0.06 0.88 6.25 -2.38 -0.01 0.87 16 42 H 0.17 2.16 6.26 -2.91 -0.02 2.14 16 43 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 1.95 6.50 -2.39 -0.02 1.93 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 48 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 50 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 51 H 0.04 2.08 3.10 -2.39 -0.01 2.07 16 52 H 0.04 1.51 5.11 -2.39 -0.01 1.50 16 Total: -1.00 -76.52 394.89 2.05 -74.47 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.26 Total: 31.55 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 8.34 Total: 17.25 kcal Atomic # 7 Polarization: -143.45 SS G_CDS: -8.16 Total: -151.61 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.67 Total: 49.52 kcal Total: -76.52 2.05 -74.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025630147.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.425 kcal (2) G-P(sol) polarization free energy of solvation -76.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds