Wall clock time and date at job start Wed Apr 1 2020 05:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46657 * 2 1 4 4 N 1.46501 * 109.46718 * 240.00116 * 2 1 3 5 5 C 1.34776 * 120.00063 * 84.99820 * 4 2 1 6 6 O 1.21518 * 119.99904 * 0.02562 * 5 4 2 7 7 C 1.48180 * 119.99850 * 179.97438 * 5 4 2 8 8 C 1.39036 * 119.68895 * 179.97438 * 7 5 4 9 9 C 1.39455 * 118.95795 * 179.97438 * 8 7 5 10 10 N 1.39189 * 120.83407 * 180.02562 * 9 8 7 11 11 C 1.46499 * 119.99857 * 0.02562 * 10 9 8 12 12 C 1.46501 * 120.00032 * 180.02562 * 10 9 8 13 13 C 1.39422 * 118.33196 * 0.02562 * 9 8 7 14 14 C 1.38225 * 119.26731 * 359.97438 * 13 9 8 15 15 N 1.31654 * 120.99470 * 359.74190 * 14 13 9 16 16 C 1.52999 * 109.47144 * 119.99896 * 2 1 3 17 17 H 1.08999 * 109.49716 * 59.93709 * 16 2 1 18 18 C 1.53042 * 109.52252 * 299.85266 * 16 2 1 19 19 C 1.53040 * 109.53399 * 178.67024 * 18 16 2 20 20 C 1.52757 * 109.38837 * 61.23930 * 19 18 16 21 21 N 1.46933 * 109.00863 * 305.59166 * 20 19 18 22 22 C 1.36935 * 120.62781 * 233.58305 * 21 20 19 23 23 H 1.07995 * 119.99873 * 152.09995 * 22 21 20 24 24 C 1.38811 * 119.99806 * 332.09376 * 22 21 20 25 25 N 1.31615 * 120.00651 * 335.28172 * 24 22 21 26 26 Si 1.86803 * 119.99607 * 155.00135 * 24 22 21 27 27 H 1.48496 * 109.47436 * 60.00138 * 26 24 22 28 28 H 1.48503 * 109.47168 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47355 * 300.00110 * 26 24 22 30 30 C 1.46923 * 118.73785 * 53.30252 * 21 20 19 31 31 H 1.09001 * 109.46965 * 299.99656 * 1 2 3 32 32 H 1.08994 * 109.47208 * 60.00003 * 1 2 3 33 33 H 1.08999 * 109.46804 * 180.02562 * 1 2 3 34 34 H 0.96998 * 119.99895 * 264.99633 * 4 2 1 35 35 H 1.07999 * 120.52355 * 0.02562 * 8 7 5 36 36 H 1.09005 * 109.47080 * 90.00101 * 11 10 9 37 37 H 1.09000 * 109.47479 * 210.00040 * 11 10 9 38 38 H 1.09003 * 109.47402 * 329.99944 * 11 10 9 39 39 H 1.09008 * 109.46678 * 90.00386 * 12 10 9 40 40 H 1.08990 * 109.47127 * 209.99885 * 12 10 9 41 41 H 1.08991 * 109.47322 * 330.00480 * 12 10 9 42 42 H 1.08003 * 120.36517 * 180.02562 * 13 9 8 43 43 H 1.08003 * 119.50575 * 179.97438 * 14 13 9 44 44 H 1.08990 * 109.46013 * 298.68790 * 18 16 2 45 45 H 1.09000 * 109.45871 * 58.64982 * 18 16 2 46 46 H 1.09003 * 109.50007 * 181.32125 * 19 18 16 47 47 H 1.09008 * 109.49676 * 301.38120 * 19 18 16 48 48 H 1.08994 * 109.51278 * 185.70471 * 20 19 18 49 49 H 1.09000 * 109.43033 * 65.42089 * 20 19 18 50 50 H 0.97009 * 119.99439 * 353.96783 * 25 24 22 51 51 H 1.09006 * 109.58528 * 66.43409 * 30 21 20 52 52 H 1.09001 * 109.58720 * 186.85700 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0183 -2.3572 6 8 1.8584 1.1609 -2.4116 7 6 2.6413 -0.7167 -3.5670 8 6 2.7710 -0.0170 -4.7614 9 6 3.2382 -0.6892 -5.8904 10 7 3.3836 -0.0267 -7.1059 11 6 3.0447 1.3947 -7.2105 12 6 3.8755 -0.7509 -8.2805 13 6 3.5561 -2.0414 -5.7710 14 6 3.3998 -2.6670 -4.5484 15 7 2.9616 -2.0040 -3.4987 16 6 2.0400 -0.7212 1.2492 17 1 1.6760 -1.7486 1.2503 18 6 1.5336 0.0015 2.4996 19 6 2.0160 -0.7387 3.7492 20 6 3.5433 -0.7430 3.7781 21 7 4.0443 -1.3011 2.5145 22 6 4.9301 -2.3453 2.5158 23 1 4.9567 -3.0318 1.6825 24 6 5.7940 -2.5214 3.5879 25 7 6.1263 -1.4944 4.3409 26 14 6.4787 -4.2176 3.9669 27 1 7.2512 -4.7119 2.7989 28 1 7.3695 -4.1383 5.1524 29 1 5.3594 -5.1512 4.2509 30 6 3.5720 -0.7215 1.2498 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.2490 -1.6317 -1.1527 35 1 2.5148 1.0309 -4.8139 36 1 3.9258 1.9958 -6.9856 37 1 2.7043 1.6135 -8.2226 38 1 2.2519 1.6324 -6.5012 39 1 3.0323 -1.1790 -8.8228 40 1 4.4148 -0.0632 -8.9318 41 1 4.5451 -1.5493 -7.9611 42 1 3.9211 -2.5939 -6.6243 43 1 3.6445 -3.7145 -4.4517 44 1 1.9182 1.0212 2.5105 45 1 0.4439 0.0247 2.4893 46 1 1.6355 -0.2370 4.6389 47 1 1.6517 -1.7659 3.7270 48 1 3.8900 -1.3549 4.6107 49 1 3.9066 0.2779 3.8960 50 1 5.8390 -0.6006 4.0964 51 1 3.9376 0.3012 1.1574 52 1 3.9376 -1.3193 0.4148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025630149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:02 Heat of formation + Delta-G solvation = 23.563017 kcal Electronic energy + Delta-G solvation = -30833.918601 eV Core-core repulsion = 26833.812252 eV Total energy + Delta-G solvation = -4000.106349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.77161 -39.44330 -37.96768 -37.15355 -35.35361 -33.15650 -31.91118 -31.48042 -30.63123 -30.41061 -28.77224 -28.33295 -25.83956 -25.18916 -24.40936 -22.97570 -22.34656 -22.00482 -20.52009 -20.18556 -19.12673 -18.16268 -17.29718 -17.15020 -16.39215 -15.80226 -15.64473 -15.47087 -14.99092 -14.62094 -14.57112 -14.24734 -14.22141 -13.88353 -13.66742 -13.57311 -13.40663 -13.28359 -13.08076 -12.78175 -12.77446 -12.59044 -12.48619 -12.24868 -11.82166 -11.67918 -11.52858 -11.05936 -10.90400 -10.84155 -10.61664 -10.27365 -10.23192 -10.12843 -9.99478 -9.83440 -9.75717 -9.50349 -9.35909 -9.20012 -8.82412 -8.30038 -8.02668 -6.80937 -5.99876 -3.16032 0.62945 1.26766 2.56844 2.83169 3.25136 3.53503 3.56683 3.74737 3.88708 4.18222 4.45583 4.48903 4.63296 4.73953 4.83369 4.85813 4.95935 4.97275 5.15249 5.17748 5.23854 5.27661 5.30224 5.39121 5.41152 5.46989 5.54278 5.58129 5.61705 5.72430 5.76459 5.78845 6.01282 6.05931 6.12427 6.26986 6.28585 6.33244 6.41155 6.55015 6.56451 6.65786 6.69142 6.78185 6.83144 6.90300 6.92399 7.17967 7.28118 7.58730 7.89669 8.07069 8.33087 8.64549 9.19217 9.91978 10.37152 11.28234 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002663 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.009734 B =10510.932869 C =12140.196239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.086 0.914 4 N -0.696 5.696 5 C 0.571 3.429 6 O -0.541 6.541 7 C 0.123 3.877 8 C -0.189 4.189 9 C 0.241 3.759 10 N -0.628 5.628 11 C 0.087 3.913 12 C 0.091 3.909 13 C -0.236 4.236 14 C 0.141 3.859 15 N -0.497 5.497 16 C -0.110 4.110 17 H 0.073 0.927 18 C -0.101 4.101 19 C -0.136 4.136 20 C 0.148 3.852 21 N -0.598 5.598 22 C -0.346 4.346 23 H 0.056 0.944 24 C -0.026 4.026 25 N -0.917 5.917 26 Si 1.064 2.936 27 H -0.293 1.293 28 H -0.286 1.286 29 H -0.294 1.294 30 C 0.157 3.843 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.413 0.587 35 H 0.145 0.855 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.136 0.864 43 H 0.161 0.839 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.014 0.986 50 H 0.269 0.731 51 H 0.014 0.986 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 1.879 -23.181 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.104 0.896 4 N -0.346 5.346 5 C 0.355 3.645 6 O -0.419 6.419 7 C -0.014 4.014 8 C -0.215 4.215 9 C 0.131 3.869 10 N -0.339 5.339 11 C -0.056 4.056 12 C -0.052 4.052 13 C -0.261 4.261 14 C -0.017 4.017 15 N -0.212 5.212 16 C -0.131 4.131 17 H 0.092 0.908 18 C -0.139 4.139 19 C -0.175 4.175 20 C 0.023 3.977 21 N -0.321 5.321 22 C -0.475 4.475 23 H 0.073 0.927 24 C -0.227 4.227 25 N -0.558 5.558 26 Si 0.894 3.106 27 H -0.220 1.220 28 H -0.212 1.212 29 H -0.221 1.221 30 C 0.031 3.969 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.249 0.751 35 H 0.163 0.837 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.032 0.968 50 H 0.080 0.920 51 H 0.032 0.968 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.861 1.534 -21.482 23.288 hybrid contribution -0.654 0.825 -2.135 2.381 sum -9.516 2.359 -23.617 25.571 Atomic orbital electron populations 1.22200 0.95536 1.02018 1.02153 1.21100 0.93618 0.97496 0.83665 0.89576 1.45948 1.64860 1.14970 1.08802 1.17881 0.77855 0.85956 0.82790 1.90747 1.51082 1.15160 1.84879 1.20903 0.96937 0.90354 0.93231 1.21572 1.06221 1.02158 0.91590 1.17959 0.91689 0.91493 0.85799 1.46275 1.70472 1.09884 1.07267 1.21755 1.00966 0.80117 1.02713 1.21706 0.99062 0.97366 0.87061 1.21808 1.09757 0.93807 1.00764 1.22511 0.92440 0.99778 0.87000 1.67632 1.13762 1.07717 1.32113 1.21950 0.99424 0.99364 0.92375 0.90833 1.21443 0.99000 0.98926 0.94547 1.21986 0.99729 0.99787 0.96038 1.20873 0.89740 0.96604 0.90525 1.44095 1.50098 1.38693 0.99258 1.19970 1.14399 1.03932 1.09232 0.92667 1.25817 0.95207 1.04729 0.96989 1.70771 1.42855 0.99601 1.42546 0.83546 0.75962 0.75070 0.76067 1.22036 1.21179 1.22106 1.20861 0.89956 0.96112 0.89980 0.91255 0.92604 0.92545 0.75075 0.83723 0.92750 0.91111 0.90777 0.92965 0.91128 0.90991 0.84620 0.82136 0.92596 0.92810 0.93022 0.92414 0.90367 0.96753 0.92045 0.96829 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.14 37.16 0.34 -1.80 16 2 C 0.15 2.26 2.16 -67.93 -0.15 2.11 16 3 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 4 N -0.70 -10.77 4.46 -54.64 -0.24 -11.01 16 5 C 0.57 9.23 7.78 -12.18 -0.09 9.13 16 6 O -0.54 -9.83 15.98 5.35 0.09 -9.74 16 7 C 0.12 1.78 6.75 -83.05 -0.56 1.22 16 8 C -0.19 -2.39 8.78 -38.83 -0.34 -2.73 16 9 C 0.24 2.52 6.57 -83.63 -0.55 1.97 16 10 N -0.63 -5.02 3.40 -187.37 -0.64 -5.65 16 11 C 0.09 0.56 10.22 59.85 0.61 1.17 16 12 C 0.09 0.46 10.22 59.85 0.61 1.07 16 13 C -0.24 -2.21 9.27 -39.15 -0.36 -2.58 16 14 C 0.14 1.51 11.17 -17.63 -0.20 1.32 16 15 N -0.50 -6.82 9.54 -9.89 -0.09 -6.91 16 16 C -0.11 -1.91 1.97 -90.50 -0.18 -2.09 16 17 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 18 C -0.10 -1.69 4.86 -26.69 -0.13 -1.81 16 19 C -0.14 -2.59 6.06 -26.84 -0.16 -2.75 16 20 C 0.15 3.53 4.66 -3.93 -0.02 3.52 16 21 N -0.60 -15.21 2.86 -172.58 -0.49 -15.71 16 22 C -0.35 -9.80 9.49 -15.06 -0.14 -9.94 16 23 H 0.06 1.57 7.94 -52.49 -0.42 1.15 16 24 C -0.03 -0.74 4.69 -17.43 -0.08 -0.82 16 25 N -0.92 -27.92 12.40 55.49 0.69 -27.24 16 26 Si 1.06 25.59 29.99 -169.99 -5.10 20.49 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 C 0.16 3.41 5.56 -3.71 -0.02 3.39 16 31 H 0.07 0.85 6.41 -51.93 -0.33 0.51 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.41 6.28 7.74 -40.82 -0.32 5.96 16 35 H 0.15 1.77 5.86 -52.49 -0.31 1.47 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 38 H 0.07 0.52 6.26 -51.93 -0.32 0.19 16 39 H 0.05 0.23 8.14 -51.92 -0.42 -0.20 16 40 H 0.07 0.25 8.07 -51.93 -0.42 -0.16 16 41 H 0.07 0.33 6.25 -51.93 -0.32 0.00 16 42 H 0.14 0.89 6.26 -52.48 -0.33 0.56 16 43 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.77 6.37 -51.93 -0.33 0.44 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 48 H 0.08 2.08 6.30 -51.93 -0.33 1.76 16 49 H 0.01 0.35 7.87 -51.93 -0.41 -0.06 16 50 H 0.27 8.27 6.71 -40.82 -0.27 8.00 16 51 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.05 1.21 7.44 -51.93 -0.39 0.83 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -33.95 405.75 -9.43 -43.38 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.33 Total: 5.90 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.42 Total: 0.37 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -0.78 Total: -66.52 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.10 Total: 20.49 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.95 -9.43 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025630149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.946 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds