Wall clock time and date at job start Wed Apr 1 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46657 * 2 1 4 4 N 1.46501 * 109.46718 * 240.00116 * 2 1 3 5 5 C 1.34776 * 120.00063 * 84.99820 * 4 2 1 6 6 O 1.21518 * 119.99904 * 0.02562 * 5 4 2 7 7 C 1.48180 * 119.99850 * 179.97438 * 5 4 2 8 8 C 1.39036 * 119.68895 * 179.97438 * 7 5 4 9 9 C 1.39455 * 118.95795 * 179.97438 * 8 7 5 10 10 N 1.39189 * 120.83407 * 180.02562 * 9 8 7 11 11 C 1.46499 * 119.99857 * 0.02562 * 10 9 8 12 12 C 1.46501 * 120.00032 * 180.02562 * 10 9 8 13 13 C 1.39422 * 118.33196 * 0.02562 * 9 8 7 14 14 C 1.38225 * 119.26731 * 359.97438 * 13 9 8 15 15 N 1.31654 * 120.99470 * 359.74190 * 14 13 9 16 16 C 1.52999 * 109.47144 * 119.99896 * 2 1 3 17 17 H 1.08999 * 109.49716 * 59.93709 * 16 2 1 18 18 C 1.53042 * 109.52252 * 299.85266 * 16 2 1 19 19 C 1.53040 * 109.53399 * 178.67024 * 18 16 2 20 20 C 1.52757 * 109.38837 * 61.23930 * 19 18 16 21 21 N 1.46933 * 109.00863 * 305.59166 * 20 19 18 22 22 C 1.36935 * 120.62781 * 233.58305 * 21 20 19 23 23 H 1.07995 * 119.99873 * 152.09995 * 22 21 20 24 24 C 1.38811 * 119.99806 * 332.09376 * 22 21 20 25 25 N 1.31615 * 120.00651 * 335.28172 * 24 22 21 26 26 Si 1.86803 * 119.99607 * 155.00135 * 24 22 21 27 27 H 1.48496 * 109.47436 * 60.00138 * 26 24 22 28 28 H 1.48503 * 109.47168 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47355 * 300.00110 * 26 24 22 30 30 C 1.46923 * 118.73785 * 53.30252 * 21 20 19 31 31 H 1.09001 * 109.46965 * 299.99656 * 1 2 3 32 32 H 1.08994 * 109.47208 * 60.00003 * 1 2 3 33 33 H 1.08999 * 109.46804 * 180.02562 * 1 2 3 34 34 H 0.96998 * 119.99895 * 264.99633 * 4 2 1 35 35 H 1.07999 * 120.52355 * 0.02562 * 8 7 5 36 36 H 1.09005 * 109.47080 * 90.00101 * 11 10 9 37 37 H 1.09000 * 109.47479 * 210.00040 * 11 10 9 38 38 H 1.09003 * 109.47402 * 329.99944 * 11 10 9 39 39 H 1.09008 * 109.46678 * 90.00386 * 12 10 9 40 40 H 1.08990 * 109.47127 * 209.99885 * 12 10 9 41 41 H 1.08991 * 109.47322 * 330.00480 * 12 10 9 42 42 H 1.08003 * 120.36517 * 180.02562 * 13 9 8 43 43 H 1.08003 * 119.50575 * 179.97438 * 14 13 9 44 44 H 1.08990 * 109.46013 * 298.68790 * 18 16 2 45 45 H 1.09000 * 109.45871 * 58.64982 * 18 16 2 46 46 H 1.09003 * 109.50007 * 181.32125 * 19 18 16 47 47 H 1.09008 * 109.49676 * 301.38120 * 19 18 16 48 48 H 1.08994 * 109.51278 * 185.70471 * 20 19 18 49 49 H 1.09000 * 109.43033 * 65.42089 * 20 19 18 50 50 H 0.97009 * 119.99439 * 353.96783 * 25 24 22 51 51 H 1.09006 * 109.58528 * 66.43409 * 30 21 20 52 52 H 1.09001 * 109.58720 * 186.85700 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0183 -2.3572 6 8 1.8584 1.1609 -2.4116 7 6 2.6413 -0.7167 -3.5670 8 6 2.7710 -0.0170 -4.7614 9 6 3.2382 -0.6892 -5.8904 10 7 3.3836 -0.0267 -7.1059 11 6 3.0447 1.3947 -7.2105 12 6 3.8755 -0.7509 -8.2805 13 6 3.5561 -2.0414 -5.7710 14 6 3.3998 -2.6670 -4.5484 15 7 2.9616 -2.0040 -3.4987 16 6 2.0400 -0.7212 1.2492 17 1 1.6760 -1.7486 1.2503 18 6 1.5336 0.0015 2.4996 19 6 2.0160 -0.7387 3.7492 20 6 3.5433 -0.7430 3.7781 21 7 4.0443 -1.3011 2.5145 22 6 4.9301 -2.3453 2.5158 23 1 4.9567 -3.0318 1.6825 24 6 5.7940 -2.5214 3.5879 25 7 6.1263 -1.4944 4.3409 26 14 6.4787 -4.2176 3.9669 27 1 7.2512 -4.7119 2.7989 28 1 7.3695 -4.1383 5.1524 29 1 5.3594 -5.1512 4.2509 30 6 3.5720 -0.7215 1.2498 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.2490 -1.6317 -1.1527 35 1 2.5148 1.0309 -4.8139 36 1 3.9258 1.9958 -6.9856 37 1 2.7043 1.6135 -8.2226 38 1 2.2519 1.6324 -6.5012 39 1 3.0323 -1.1790 -8.8228 40 1 4.4148 -0.0632 -8.9318 41 1 4.5451 -1.5493 -7.9611 42 1 3.9211 -2.5939 -6.6243 43 1 3.6445 -3.7145 -4.4517 44 1 1.9182 1.0212 2.5105 45 1 0.4439 0.0247 2.4893 46 1 1.6355 -0.2370 4.6389 47 1 1.6517 -1.7659 3.7270 48 1 3.8900 -1.3549 4.6107 49 1 3.9066 0.2779 3.8960 50 1 5.8390 -0.6006 4.0964 51 1 3.9376 0.3012 1.1574 52 1 3.9376 -1.3193 0.4148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025630149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:01 Heat of formation + Delta-G solvation = 1.941223 kcal Electronic energy + Delta-G solvation = -30834.856192 eV Core-core repulsion = 26833.812252 eV Total energy + Delta-G solvation = -4001.043940 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.74961 -40.62334 -39.48204 -37.89445 -36.93388 -34.85885 -33.01460 -32.35315 -32.29016 -31.82452 -29.89585 -29.23568 -27.08615 -26.53251 -25.60554 -24.30170 -23.77950 -23.19159 -21.92996 -21.41418 -20.65580 -19.40334 -19.07135 -18.06545 -17.37062 -16.91525 -16.48660 -16.34263 -16.17709 -16.11115 -15.89818 -15.44390 -15.39025 -15.33017 -15.17350 -14.91181 -14.89403 -14.42778 -14.21530 -13.98274 -13.79786 -13.48256 -13.46370 -13.31645 -13.10491 -12.92691 -12.66574 -12.60210 -12.35262 -12.32929 -11.92857 -11.88534 -11.72845 -11.64253 -11.63410 -11.48071 -11.24463 -11.07420 -10.51909 -10.46845 -10.31731 -10.03883 -8.93120 -8.69116 -8.23925 -5.39692 -0.31675 0.42868 1.58314 1.66356 1.72304 1.85160 1.89730 2.17572 2.66198 2.93059 3.18577 3.21698 3.44499 3.70021 3.80109 3.85875 3.92754 3.97088 4.10871 4.14148 4.22772 4.29176 4.37026 4.39742 4.40616 4.49100 4.51492 4.63977 4.64689 4.73254 4.74900 4.76603 4.78082 4.83070 4.85302 4.90684 4.94786 4.95136 5.01557 5.12595 5.17117 5.21977 5.26798 5.38752 5.45979 5.53328 5.57752 5.83644 6.09351 6.21992 6.38752 6.40577 6.90869 7.06164 7.13595 7.78803 8.23141 9.00019 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002663 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.009734 B =10510.932869 C =12140.196239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 H 0.069 0.931 4 N -0.695 5.695 5 C 0.567 3.433 6 O -0.570 6.570 7 C 0.098 3.902 8 C -0.200 4.200 9 C 0.237 3.763 10 N -0.627 5.627 11 C 0.082 3.918 12 C 0.083 3.917 13 C -0.224 4.224 14 C 0.132 3.868 15 N -0.523 5.523 16 C -0.093 4.093 17 H 0.075 0.925 18 C -0.097 4.097 19 C -0.125 4.125 20 C 0.152 3.848 21 N -0.616 5.616 22 C -0.353 4.353 23 H 0.050 0.950 24 C -0.078 4.078 25 N -0.943 5.943 26 Si 1.116 2.884 27 H -0.276 1.276 28 H -0.292 1.292 29 H -0.277 1.277 30 C 0.159 3.841 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.414 0.586 35 H 0.139 0.861 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.170 0.830 43 H 0.189 0.811 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.056 0.944 48 H 0.044 0.956 49 H -0.002 1.002 50 H 0.252 0.748 51 H -0.003 1.003 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.785 0.488 -25.334 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.047 3.953 3 H 0.087 0.913 4 N -0.344 5.344 5 C 0.353 3.647 6 O -0.450 6.450 7 C -0.038 4.038 8 C -0.227 4.227 9 C 0.125 3.875 10 N -0.337 5.337 11 C -0.061 4.061 12 C -0.058 4.058 13 C -0.249 4.249 14 C -0.026 4.026 15 N -0.239 5.239 16 C -0.114 4.114 17 H 0.093 0.907 18 C -0.135 4.135 19 C -0.164 4.164 20 C 0.026 3.974 21 N -0.340 5.340 22 C -0.483 4.483 23 H 0.068 0.932 24 C -0.274 4.274 25 N -0.585 5.585 26 Si 0.940 3.060 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.203 1.203 30 C 0.033 3.967 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.250 0.750 35 H 0.157 0.843 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.187 0.813 43 H 0.206 0.794 44 H 0.072 0.928 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.016 0.984 50 H 0.062 0.938 51 H 0.014 0.986 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.129 0.153 -23.686 25.761 hybrid contribution -0.197 1.307 -1.628 2.097 sum -10.326 1.460 -25.314 27.378 Atomic orbital electron populations 1.22125 0.93100 1.02939 1.02791 1.21005 0.95344 0.96140 0.82811 0.91277 1.45954 1.64775 1.14933 1.08770 1.18243 0.77275 0.85737 0.83457 1.90711 1.52500 1.16307 1.85459 1.20689 0.99029 0.91129 0.92982 1.21585 1.06981 1.02037 0.92088 1.18104 0.91168 0.92103 0.86154 1.46581 1.69514 1.10485 1.07122 1.21877 1.00727 0.79507 1.03951 1.21954 0.99803 0.97889 0.86157 1.22134 1.08161 0.93353 1.01302 1.23048 0.91760 1.00901 0.86877 1.67576 1.15060 1.07492 1.33763 1.21724 0.95686 0.99958 0.93988 0.90670 1.21453 1.01304 0.98135 0.92580 1.21852 0.95526 1.00541 0.98505 1.20787 0.93221 0.94628 0.88748 1.44347 1.50167 1.38600 1.00897 1.20228 1.14606 1.04397 1.09063 0.93200 1.27244 0.95685 1.07330 0.97120 1.70900 1.44719 0.99336 1.43580 0.82855 0.75868 0.71208 0.76084 1.20204 1.21837 1.20331 1.20910 0.93152 0.94451 0.88147 0.89471 0.93092 0.91425 0.74957 0.84348 0.92701 0.88547 0.91922 0.91791 0.89412 0.90250 0.81263 0.79437 0.92750 0.88849 0.90440 0.92528 0.93769 0.98410 0.93840 0.98554 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.14 71.98 0.66 -3.08 16 2 C 0.15 4.65 2.16 44.99 0.10 4.74 16 3 H 0.07 2.38 7.58 -2.39 -0.02 2.36 16 4 N -0.69 -21.92 4.46 -445.08 -1.99 -23.91 16 5 C 0.57 19.02 7.78 86.89 0.68 19.70 16 6 O -0.57 -21.56 15.98 -3.77 -0.06 -21.62 16 7 C 0.10 2.93 6.75 41.83 0.28 3.21 16 8 C -0.20 -5.14 8.78 22.75 0.20 -4.94 16 9 C 0.24 4.68 6.57 38.55 0.25 4.93 16 10 N -0.63 -8.78 3.40 -746.71 -2.54 -11.31 16 11 C 0.08 0.94 10.22 127.77 1.31 2.25 16 12 C 0.08 0.57 10.22 127.77 1.31 1.88 16 13 C -0.22 -3.71 9.27 22.55 0.21 -3.50 16 14 C 0.13 2.64 11.17 84.72 0.95 3.59 16 15 N -0.52 -14.35 9.54 -185.21 -1.77 -16.12 16 16 C -0.09 -3.17 1.97 -10.72 -0.02 -3.19 16 17 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 18 C -0.10 -3.04 4.86 30.62 0.15 -2.89 16 19 C -0.13 -4.60 6.06 30.53 0.19 -4.42 16 20 C 0.15 7.42 4.66 86.22 0.40 7.82 16 21 N -0.62 -32.22 2.86 -699.93 -2.00 -34.22 16 22 C -0.35 -20.46 9.49 84.03 0.80 -19.66 16 23 H 0.05 2.89 7.94 -2.91 -0.02 2.87 16 24 C -0.08 -4.56 4.69 84.86 0.40 -4.17 16 25 N -0.94 -59.32 12.40 21.65 0.27 -59.05 16 26 Si 1.12 52.07 29.99 68.60 2.06 54.13 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 29 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 30 C 0.16 7.08 5.56 86.36 0.48 7.56 16 31 H 0.09 1.84 6.41 -2.39 -0.02 1.82 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 12.84 7.74 -92.71 -0.72 12.12 16 35 H 0.14 3.59 5.86 -2.91 -0.02 3.57 16 36 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.10 0.61 8.07 -2.39 -0.02 0.59 16 38 H 0.06 0.87 6.26 -2.39 -0.01 0.86 16 39 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 40 H 0.09 0.33 8.07 -2.39 -0.02 0.32 16 41 H 0.08 0.44 6.25 -2.39 -0.01 0.43 16 42 H 0.17 1.57 6.26 -2.91 -0.02 1.55 16 43 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.09 2.28 6.37 -2.39 -0.02 2.27 16 46 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 48 H 0.04 2.44 6.30 -2.39 -0.02 2.42 16 49 H 0.00 -0.11 7.87 -2.39 -0.02 -0.12 16 50 H 0.25 16.27 6.71 -92.70 -0.62 15.64 16 51 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 52 H 0.04 2.02 7.44 -2.39 -0.02 2.00 16 Total: -1.00 -77.22 405.75 2.65 -74.56 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.36 Total: 27.72 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 8.32 Total: 9.82 kcal Atomic # 7 Polarization: -136.59 SS G_CDS: -8.02 Total: -144.61 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 2.06 Total: 54.13 kcal Total: -77.22 2.65 -74.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025630149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.504 kcal (2) G-P(sol) polarization free energy of solvation -77.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds