Wall clock time and date at job start Wed Apr 1 2020 05:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47441 * 2 1 4 4 N 1.46496 * 109.47458 * 119.99995 * 2 1 3 5 5 C 1.34781 * 120.00126 * 275.27509 * 4 2 1 6 6 O 1.21505 * 119.99943 * 359.72310 * 5 4 2 7 7 C 1.48189 * 119.99799 * 179.71907 * 5 4 2 8 8 C 1.39042 * 119.68398 * 180.02562 * 7 5 4 9 9 C 1.39446 * 118.95263 * 179.97438 * 8 7 5 10 10 N 1.39194 * 120.83270 * 180.02562 * 9 8 7 11 11 C 1.46503 * 119.99804 * 0.02562 * 10 9 8 12 12 C 1.46499 * 120.00357 * 179.97438 * 10 9 8 13 13 C 1.39416 * 118.33790 * 359.97438 * 9 8 7 14 14 C 1.38230 * 119.26374 * 0.02562 * 13 9 8 15 15 N 1.31648 * 120.99418 * 359.74265 * 14 13 9 16 16 C 1.53006 * 109.47235 * 239.99981 * 2 1 3 17 17 H 1.08994 * 109.49858 * 185.06408 * 16 2 1 18 18 C 1.53046 * 109.49447 * 65.00020 * 16 2 1 19 19 C 1.53041 * 109.53517 * 178.68522 * 18 16 2 20 20 C 1.53197 * 109.31238 * 61.36329 * 19 18 16 21 21 N 1.46919 * 108.77737 * 305.36373 * 20 19 18 22 22 C 1.36933 * 120.63353 * 233.58619 * 21 20 19 23 23 H 1.07998 * 120.00250 * 151.83035 * 22 21 20 24 24 C 1.38819 * 119.99903 * 331.83520 * 22 21 20 25 25 N 1.31617 * 119.99613 * 343.07421 * 24 22 21 26 26 Si 1.86797 * 119.99855 * 163.07962 * 24 22 21 27 27 H 1.48500 * 109.47285 * 89.99862 * 26 24 22 28 28 H 1.48503 * 109.46898 * 209.99994 * 26 24 22 29 29 H 1.48494 * 109.47231 * 329.99549 * 26 24 22 30 30 C 1.46932 * 118.73641 * 53.61152 * 21 20 19 31 31 H 1.09005 * 109.47007 * 299.99936 * 1 2 3 32 32 H 1.08997 * 109.47084 * 59.99674 * 1 2 3 33 33 H 1.08995 * 109.46968 * 180.02562 * 1 2 3 34 34 H 0.97006 * 120.00305 * 94.99412 * 4 2 1 35 35 H 1.07995 * 120.52140 * 359.97438 * 8 7 5 36 36 H 1.09003 * 109.47332 * 89.99680 * 11 10 9 37 37 H 1.08997 * 109.46994 * 209.99724 * 11 10 9 38 38 H 1.08998 * 109.46908 * 329.99780 * 11 10 9 39 39 H 1.09001 * 109.46463 * 60.00729 * 12 10 9 40 40 H 1.09000 * 109.47074 * 179.97438 * 12 10 9 41 41 H 1.08996 * 109.47413 * 300.00449 * 12 10 9 42 42 H 1.07999 * 120.37155 * 180.02562 * 13 9 8 43 43 H 1.08002 * 119.50098 * 179.97438 * 14 13 9 44 44 H 1.08994 * 109.45708 * 298.70442 * 18 16 2 45 45 H 1.08992 * 109.45698 * 58.67708 * 18 16 2 46 46 H 1.09001 * 109.49442 * 181.31579 * 19 18 16 47 47 H 1.08997 * 109.49618 * 301.37974 * 19 18 16 48 48 H 1.08999 * 109.58220 * 65.15141 * 20 19 18 49 49 H 1.08997 * 109.58659 * 185.57469 * 20 19 18 50 50 H 0.97001 * 119.99544 * 180.02562 * 25 24 22 51 51 H 1.09001 * 109.58093 * 186.60850 * 30 21 20 52 52 H 1.08990 * 109.59138 * 66.17938 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1419 -0.0196 2.3585 6 8 1.8529 1.1593 2.4131 7 6 2.6300 -0.7197 3.5699 8 6 2.7544 -0.0213 4.7657 9 6 3.2147 -0.6953 5.8964 10 7 3.3537 -0.0346 7.1136 11 6 3.0141 1.3867 7.2184 12 6 3.8384 -0.7606 8.2901 13 6 3.5313 -2.0479 5.7774 14 6 3.3806 -2.6720 4.5532 15 7 2.9393 -2.0098 3.5045 16 6 2.0400 -0.7213 -1.2493 17 1 3.1262 -0.8007 -1.2055 18 6 1.6354 0.0687 -2.4961 19 6 2.1733 -0.6346 -3.7444 20 6 1.5611 -2.0357 -3.8399 21 7 1.8219 -2.7523 -2.5841 22 6 2.4217 -3.9832 -2.5948 23 1 3.0106 -4.3043 -1.7484 24 6 2.2728 -4.8184 -3.6936 25 7 1.3123 -4.5943 -4.5651 26 14 3.4356 -6.2602 -3.9352 27 1 2.8818 -7.4613 -3.2599 28 1 3.5887 -6.5348 -5.3865 29 1 4.7605 -5.9308 -3.3513 30 6 1.4263 -2.1233 -1.3165 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6318 1.1526 35 1 2.4986 1.0266 4.8180 36 1 1.9635 1.4902 7.4898 37 1 3.6347 1.8530 7.9836 38 1 3.1914 1.8742 6.2598 39 1 4.8347 -1.1542 8.0890 40 1 3.8811 -0.0831 9.1429 41 1 3.1605 -1.5843 8.5135 42 1 3.8902 -2.6019 6.6321 43 1 3.6251 -3.7195 4.4566 44 1 0.5485 0.1271 -2.5521 45 1 2.0507 1.0748 -2.4390 46 1 1.9048 -0.0591 -4.6303 47 1 3.2582 -0.7148 -3.6777 48 1 0.4857 -1.9545 -3.9978 49 1 2.0147 -2.5768 -4.6703 50 1 1.2080 -5.1781 -5.3327 51 1 1.7910 -2.7222 -0.4820 52 1 0.3399 -2.0493 -1.2686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025630150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:08 Heat of formation + Delta-G solvation = 26.926468 kcal Electronic energy + Delta-G solvation = -30733.076167 eV Core-core repulsion = 26733.115669 eV Total energy + Delta-G solvation = -3999.960499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.76364 -39.43587 -37.92511 -37.15239 -35.12366 -32.98728 -31.88527 -31.48744 -30.62938 -30.38154 -28.75516 -27.97898 -25.83785 -25.23754 -24.72669 -23.21520 -22.38381 -22.03932 -20.59897 -19.94679 -18.68339 -18.09144 -17.14674 -16.71963 -16.23929 -15.71412 -15.63919 -15.45424 -14.99555 -14.83135 -14.58084 -14.37635 -14.28730 -13.98170 -13.71960 -13.46782 -13.34572 -13.12991 -12.97957 -12.77721 -12.61170 -12.40107 -12.28298 -12.18871 -11.73305 -11.71547 -11.55460 -10.94611 -10.89293 -10.84364 -10.50050 -10.40569 -10.21470 -10.12993 -9.99903 -9.79642 -9.62512 -9.46018 -9.35167 -9.32601 -8.78473 -8.40529 -8.04318 -6.59304 -5.73555 -3.15472 0.63344 1.26642 2.56232 2.84114 3.28544 3.40806 3.47746 3.50549 3.89205 4.19967 4.46359 4.47991 4.53674 4.73452 4.80879 4.86677 5.00792 5.10877 5.11901 5.18991 5.23607 5.28735 5.31285 5.45865 5.46559 5.51785 5.61187 5.65844 5.72632 5.76533 5.79432 5.94024 6.10303 6.20056 6.31023 6.32928 6.33581 6.43360 6.57671 6.67547 6.68585 6.73820 6.78089 6.87436 6.89419 6.93826 7.07158 7.46169 7.61731 7.73062 7.85124 7.92010 8.35303 8.50737 9.27045 9.90699 10.47695 11.34841 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.002505 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.330611 B =11174.457134 C =12870.283093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 H 0.082 0.918 4 N -0.697 5.697 5 C 0.569 3.431 6 O -0.543 6.543 7 C 0.122 3.878 8 C -0.189 4.189 9 C 0.240 3.760 10 N -0.628 5.628 11 C 0.087 3.913 12 C 0.093 3.907 13 C -0.233 4.233 14 C 0.141 3.859 15 N -0.496 5.496 16 C -0.112 4.112 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.250 4.250 23 H 0.065 0.935 24 C 0.001 3.999 25 N -0.903 5.903 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.150 3.850 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.414 0.586 35 H 0.145 0.855 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.135 0.865 43 H 0.162 0.838 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.017 0.983 49 H 0.085 0.915 50 H 0.253 0.747 51 H 0.050 0.950 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.558 10.203 23.258 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.100 0.900 4 N -0.347 5.347 5 C 0.354 3.646 6 O -0.421 6.421 7 C -0.015 4.015 8 C -0.215 4.215 9 C 0.130 3.870 10 N -0.339 5.339 11 C -0.056 4.056 12 C -0.049 4.049 13 C -0.259 4.259 14 C -0.018 4.018 15 N -0.211 5.211 16 C -0.133 4.133 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.380 4.380 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.547 5.547 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.205 1.205 30 C 0.024 3.976 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.252 0.748 35 H 0.163 0.837 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.153 0.847 43 H 0.179 0.821 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.035 0.965 49 H 0.104 0.896 50 H 0.063 0.937 51 H 0.068 0.932 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.221 10.619 22.479 25.069 hybrid contribution 0.812 -0.841 0.766 1.397 sum 4.033 9.778 23.245 25.538 Atomic orbital electron populations 1.22261 0.95330 1.02842 1.01850 1.21099 0.94259 0.96741 0.83592 0.89985 1.46065 1.64668 1.15200 1.08792 1.17901 0.77923 0.85984 0.82832 1.90739 1.51139 1.15263 1.84946 1.20931 0.97008 0.90305 0.93296 1.21574 1.06376 1.02049 0.91525 1.17938 0.91885 0.91518 0.85707 1.46280 1.70768 1.09840 1.07052 1.21783 1.00493 0.80176 1.03104 1.21678 0.99096 0.97232 0.86939 1.21780 1.09802 0.93694 1.00613 1.22531 0.92351 0.99823 0.87049 1.67645 1.13574 1.07589 1.32290 1.21948 1.00988 0.98056 0.92326 0.90920 1.21421 1.00496 0.97180 0.94726 1.22183 1.00608 0.99613 0.95752 1.20781 0.96553 0.88002 0.90237 1.44023 1.69893 1.17442 0.99943 1.19171 1.23213 0.91950 1.03624 0.91743 1.25031 0.97460 0.97643 0.99572 1.70039 1.30358 1.39533 1.14803 0.86327 0.81048 0.82591 0.77002 1.21444 1.21656 1.20509 1.21011 0.96127 0.90404 0.90070 0.92920 0.91347 0.91481 0.74848 0.83742 0.92840 0.91113 0.90780 0.92415 0.90524 0.92399 0.84749 0.82091 0.92240 0.93570 0.93285 0.92822 0.96489 0.89650 0.93731 0.93174 0.95667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.75 37.16 0.33 -2.13 16 2 C 0.15 2.31 2.35 -67.93 -0.16 2.15 16 3 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 4 N -0.70 -10.84 5.00 -54.64 -0.27 -11.11 16 5 C 0.57 9.05 7.77 -12.17 -0.09 8.96 16 6 O -0.54 -9.64 15.98 5.36 0.09 -9.56 16 7 C 0.12 1.73 6.75 -83.05 -0.56 1.17 16 8 C -0.19 -2.31 8.78 -38.83 -0.34 -2.65 16 9 C 0.24 2.44 6.57 -83.63 -0.55 1.89 16 10 N -0.63 -4.79 3.40 -187.37 -0.64 -5.43 16 11 C 0.09 0.52 10.19 59.85 0.61 1.13 16 12 C 0.09 0.44 9.43 59.85 0.56 1.01 16 13 C -0.23 -2.15 9.39 -39.15 -0.37 -2.52 16 14 C 0.14 1.50 11.17 -17.63 -0.20 1.30 16 15 N -0.50 -6.75 9.54 -9.89 -0.09 -6.85 16 16 C -0.11 -1.96 2.27 -90.49 -0.21 -2.16 16 17 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 18 C -0.10 -1.70 4.89 -26.69 -0.13 -1.83 16 19 C -0.14 -2.75 6.08 -26.61 -0.16 -2.91 16 20 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 21 N -0.59 -14.75 2.99 -172.32 -0.52 -15.26 16 22 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 23 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 24 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 25 N -0.90 -26.31 11.20 55.49 0.62 -25.69 16 26 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 C 0.15 3.10 5.26 -3.71 -0.02 3.08 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.96 6.60 -51.93 -0.34 0.62 16 33 H 0.07 1.04 6.23 -51.93 -0.32 0.72 16 34 H 0.41 6.48 6.61 -40.82 -0.27 6.21 16 35 H 0.14 1.71 5.86 -52.49 -0.31 1.40 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16 38 H 0.07 0.50 6.26 -51.93 -0.32 0.17 16 39 H 0.06 0.25 7.99 -51.93 -0.42 -0.16 16 40 H 0.08 0.22 7.79 -51.93 -0.40 -0.18 16 41 H 0.06 0.25 7.99 -51.93 -0.41 -0.16 16 42 H 0.13 0.87 6.88 -52.49 -0.36 0.51 16 43 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.06 0.99 6.63 -51.93 -0.34 0.65 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 50 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 51 H 0.05 1.02 6.75 -51.93 -0.35 0.67 16 52 H 0.03 0.53 6.06 -51.93 -0.31 0.22 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -32.61 402.93 -9.53 -42.14 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.22 Total: 5.43 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.54 Total: 3.48 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -0.90 Total: -64.34 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.61 -9.53 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025630150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.064 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds