Wall clock time and date at job start Wed Apr 1 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47441 * 2 1 4 4 N 1.46496 * 109.47458 * 119.99995 * 2 1 3 5 5 C 1.34781 * 120.00126 * 275.27509 * 4 2 1 6 6 O 1.21505 * 119.99943 * 359.72310 * 5 4 2 7 7 C 1.48189 * 119.99799 * 179.71907 * 5 4 2 8 8 C 1.39042 * 119.68398 * 180.02562 * 7 5 4 9 9 C 1.39446 * 118.95263 * 179.97438 * 8 7 5 10 10 N 1.39194 * 120.83270 * 180.02562 * 9 8 7 11 11 C 1.46503 * 119.99804 * 0.02562 * 10 9 8 12 12 C 1.46499 * 120.00357 * 179.97438 * 10 9 8 13 13 C 1.39416 * 118.33790 * 359.97438 * 9 8 7 14 14 C 1.38230 * 119.26374 * 0.02562 * 13 9 8 15 15 N 1.31648 * 120.99418 * 359.74265 * 14 13 9 16 16 C 1.53006 * 109.47235 * 239.99981 * 2 1 3 17 17 H 1.08994 * 109.49858 * 185.06408 * 16 2 1 18 18 C 1.53046 * 109.49447 * 65.00020 * 16 2 1 19 19 C 1.53041 * 109.53517 * 178.68522 * 18 16 2 20 20 C 1.53197 * 109.31238 * 61.36329 * 19 18 16 21 21 N 1.46919 * 108.77737 * 305.36373 * 20 19 18 22 22 C 1.36933 * 120.63353 * 233.58619 * 21 20 19 23 23 H 1.07998 * 120.00250 * 151.83035 * 22 21 20 24 24 C 1.38819 * 119.99903 * 331.83520 * 22 21 20 25 25 N 1.31617 * 119.99613 * 343.07421 * 24 22 21 26 26 Si 1.86797 * 119.99855 * 163.07962 * 24 22 21 27 27 H 1.48500 * 109.47285 * 89.99862 * 26 24 22 28 28 H 1.48503 * 109.46898 * 209.99994 * 26 24 22 29 29 H 1.48494 * 109.47231 * 329.99549 * 26 24 22 30 30 C 1.46932 * 118.73641 * 53.61152 * 21 20 19 31 31 H 1.09005 * 109.47007 * 299.99936 * 1 2 3 32 32 H 1.08997 * 109.47084 * 59.99674 * 1 2 3 33 33 H 1.08995 * 109.46968 * 180.02562 * 1 2 3 34 34 H 0.97006 * 120.00305 * 94.99412 * 4 2 1 35 35 H 1.07995 * 120.52140 * 359.97438 * 8 7 5 36 36 H 1.09003 * 109.47332 * 89.99680 * 11 10 9 37 37 H 1.08997 * 109.46994 * 209.99724 * 11 10 9 38 38 H 1.08998 * 109.46908 * 329.99780 * 11 10 9 39 39 H 1.09001 * 109.46463 * 60.00729 * 12 10 9 40 40 H 1.09000 * 109.47074 * 179.97438 * 12 10 9 41 41 H 1.08996 * 109.47413 * 300.00449 * 12 10 9 42 42 H 1.07999 * 120.37155 * 180.02562 * 13 9 8 43 43 H 1.08002 * 119.50098 * 179.97438 * 14 13 9 44 44 H 1.08994 * 109.45708 * 298.70442 * 18 16 2 45 45 H 1.08992 * 109.45698 * 58.67708 * 18 16 2 46 46 H 1.09001 * 109.49442 * 181.31579 * 19 18 16 47 47 H 1.08997 * 109.49618 * 301.37974 * 19 18 16 48 48 H 1.08999 * 109.58220 * 65.15141 * 20 19 18 49 49 H 1.08997 * 109.58659 * 185.57469 * 20 19 18 50 50 H 0.97001 * 119.99544 * 180.02562 * 25 24 22 51 51 H 1.09001 * 109.58093 * 186.60850 * 30 21 20 52 52 H 1.08990 * 109.59138 * 66.17938 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1419 -0.0196 2.3585 6 8 1.8529 1.1593 2.4131 7 6 2.6300 -0.7197 3.5699 8 6 2.7544 -0.0213 4.7657 9 6 3.2147 -0.6953 5.8964 10 7 3.3537 -0.0346 7.1136 11 6 3.0141 1.3867 7.2184 12 6 3.8384 -0.7606 8.2901 13 6 3.5313 -2.0479 5.7774 14 6 3.3806 -2.6720 4.5532 15 7 2.9393 -2.0098 3.5045 16 6 2.0400 -0.7213 -1.2493 17 1 3.1262 -0.8007 -1.2055 18 6 1.6354 0.0687 -2.4961 19 6 2.1733 -0.6346 -3.7444 20 6 1.5611 -2.0357 -3.8399 21 7 1.8219 -2.7523 -2.5841 22 6 2.4217 -3.9832 -2.5948 23 1 3.0106 -4.3043 -1.7484 24 6 2.2728 -4.8184 -3.6936 25 7 1.3123 -4.5943 -4.5651 26 14 3.4356 -6.2602 -3.9352 27 1 2.8818 -7.4613 -3.2599 28 1 3.5887 -6.5348 -5.3865 29 1 4.7605 -5.9308 -3.3513 30 6 1.4263 -2.1233 -1.3165 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6318 1.1526 35 1 2.4986 1.0266 4.8180 36 1 1.9635 1.4902 7.4898 37 1 3.6347 1.8530 7.9836 38 1 3.1914 1.8742 6.2598 39 1 4.8347 -1.1542 8.0890 40 1 3.8811 -0.0831 9.1429 41 1 3.1605 -1.5843 8.5135 42 1 3.8902 -2.6019 6.6321 43 1 3.6251 -3.7195 4.4566 44 1 0.5485 0.1271 -2.5521 45 1 2.0507 1.0748 -2.4390 46 1 1.9048 -0.0591 -4.6303 47 1 3.2582 -0.7148 -3.6777 48 1 0.4857 -1.9545 -3.9978 49 1 2.0147 -2.5768 -4.6703 50 1 1.2080 -5.1781 -5.3327 51 1 1.7910 -2.7222 -0.4820 52 1 0.3399 -2.0493 -1.2686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025630150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:06 Heat of formation + Delta-G solvation = 6.612134 kcal Electronic energy + Delta-G solvation = -30733.957063 eV Core-core repulsion = 26733.115669 eV Total energy + Delta-G solvation = -4000.841394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.71984 -40.59860 -39.37765 -37.86545 -36.68721 -34.67976 -32.98891 -32.31353 -32.26083 -31.82700 -29.54385 -29.15251 -27.20097 -26.53212 -25.82412 -24.46151 -23.83243 -23.16299 -22.04291 -21.12782 -20.15259 -19.11933 -18.57587 -18.01179 -17.24762 -16.87268 -16.73578 -16.39530 -16.27151 -16.03205 -15.77928 -15.66944 -15.32048 -15.17803 -14.98712 -14.84918 -14.71202 -14.36279 -14.03159 -13.94047 -13.63425 -13.50544 -13.29551 -13.19467 -13.14257 -13.02685 -12.75653 -12.67784 -12.36239 -12.27968 -12.03842 -11.94218 -11.69215 -11.59663 -11.50487 -11.37357 -11.15333 -11.03392 -10.49478 -10.48315 -10.28969 -10.00660 -8.67701 -8.61812 -7.83925 -5.28685 -0.28563 0.45262 1.47627 1.49152 1.58977 1.75840 1.92838 2.21409 2.53520 2.95969 3.22668 3.30514 3.60511 3.73617 3.90311 3.93053 4.00904 4.07231 4.11809 4.15107 4.36575 4.37042 4.42187 4.46778 4.48745 4.50731 4.67103 4.67873 4.70983 4.72563 4.79666 4.86961 4.88525 4.90405 4.90720 4.97576 4.98177 5.06632 5.15968 5.22369 5.30917 5.36936 5.46994 5.51149 5.56928 5.61054 5.70615 5.81880 6.12532 6.23886 6.42190 6.45322 6.93843 7.17016 7.18752 7.90377 8.42054 9.22150 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.002505 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.330611 B =11174.457134 C =12870.283093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.085 0.915 4 N -0.697 5.697 5 C 0.568 3.432 6 O -0.568 6.568 7 C 0.098 3.902 8 C -0.197 4.197 9 C 0.237 3.763 10 N -0.627 5.627 11 C 0.081 3.919 12 C 0.086 3.914 13 C -0.222 4.222 14 C 0.132 3.868 15 N -0.524 5.524 16 C -0.097 4.097 17 H 0.062 0.938 18 C -0.097 4.097 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.260 4.260 23 H 0.065 0.935 24 C -0.051 4.051 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.284 1.284 28 H -0.293 1.293 29 H -0.272 1.272 30 C 0.152 3.848 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.413 0.587 35 H 0.141 0.859 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.167 0.833 43 H 0.186 0.814 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.047 0.953 48 H -0.003 1.003 49 H 0.050 0.950 50 H 0.249 0.751 51 H 0.047 0.953 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.679 10.720 25.779 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.103 0.897 4 N -0.347 5.347 5 C 0.354 3.646 6 O -0.448 6.448 7 C -0.039 4.039 8 C -0.224 4.224 9 C 0.124 3.876 10 N -0.337 5.337 11 C -0.061 4.061 12 C -0.056 4.056 13 C -0.247 4.247 14 C -0.027 4.027 15 N -0.240 5.240 16 C -0.117 4.117 17 H 0.081 0.919 18 C -0.134 4.134 19 C -0.170 4.170 20 C 0.049 3.951 21 N -0.332 5.332 22 C -0.390 4.390 23 H 0.082 0.918 24 C -0.247 4.247 25 N -0.580 5.580 26 Si 0.793 3.207 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.197 1.197 30 C 0.026 3.974 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.250 0.750 35 H 0.159 0.841 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.184 0.816 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.015 0.985 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.065 0.935 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.352 11.158 25.052 27.768 hybrid contribution 0.464 -0.996 0.140 1.108 sum 4.815 10.162 25.192 27.588 Atomic orbital electron populations 1.22201 0.94624 1.02367 1.02434 1.20980 0.94665 0.96427 0.82827 0.89699 1.46062 1.64697 1.15077 1.08874 1.18227 0.77277 0.85772 0.83343 1.90705 1.52368 1.16244 1.85440 1.20709 0.99099 0.90975 0.93091 1.21589 1.06950 1.01983 0.91882 1.18076 0.91320 0.92035 0.86147 1.46587 1.69721 1.10504 1.06872 1.21920 1.01308 0.79527 1.03337 1.21923 0.99443 0.97848 0.86363 1.22073 1.08291 0.93333 1.01028 1.23016 0.91797 1.00843 0.86999 1.67582 1.14938 1.07504 1.33956 1.21724 1.00035 0.96225 0.93751 0.91905 1.21415 1.01001 0.98144 0.92881 1.22019 0.99857 0.97027 0.98129 1.20620 0.95303 0.90212 0.88976 1.44282 1.70125 1.17266 1.01527 1.19481 1.23019 0.92900 1.03588 0.91773 1.25771 0.98947 1.00375 0.99573 1.70190 1.31970 1.40650 1.15236 0.85321 0.79341 0.79556 0.76512 1.21097 1.21949 1.19651 1.21089 0.96130 0.91975 0.88166 0.92955 0.90116 0.92417 0.74995 0.84134 0.92512 0.88578 0.91974 0.91672 0.88401 0.91735 0.81593 0.79695 0.91581 0.90558 0.91036 0.93383 0.98465 0.93105 0.94206 0.93487 0.95843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 8.75 71.98 0.63 -3.96 16 2 C 0.16 4.76 2.35 44.99 0.11 4.87 16 3 H 0.08 2.62 7.58 -2.38 -0.02 2.60 16 4 N -0.70 -21.85 5.00 -445.08 -2.23 -24.08 16 5 C 0.57 18.35 7.77 86.89 0.68 19.02 16 6 O -0.57 -20.41 15.98 -3.73 -0.06 -20.47 16 7 C 0.10 2.81 6.75 41.83 0.28 3.09 16 8 C -0.20 -4.81 8.78 22.75 0.20 -4.61 16 9 C 0.24 4.44 6.57 38.55 0.25 4.70 16 10 N -0.63 -8.10 3.40 -746.71 -2.54 -10.63 16 11 C 0.08 0.82 10.19 127.77 1.30 2.13 16 12 C 0.09 0.52 9.43 127.77 1.21 1.73 16 13 C -0.22 -3.58 9.39 22.55 0.21 -3.37 16 14 C 0.13 2.61 11.17 84.72 0.95 3.56 16 15 N -0.52 -14.20 9.54 -185.21 -1.77 -15.97 16 16 C -0.10 -3.31 2.27 -10.71 -0.02 -3.33 16 17 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 18 C -0.10 -3.10 4.89 30.62 0.15 -2.95 16 19 C -0.13 -4.95 6.08 30.67 0.19 -4.77 16 20 C 0.17 8.53 5.30 86.37 0.46 8.99 16 21 N -0.61 -30.95 2.99 -699.10 -2.09 -33.04 16 22 C -0.26 -14.50 9.58 84.04 0.81 -13.69 16 23 H 0.06 3.51 7.88 -2.91 -0.02 3.48 16 24 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 25 N -0.93 -55.98 11.20 21.65 0.24 -55.74 16 26 Si 0.96 45.52 29.59 68.60 2.03 47.55 16 27 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 29 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 30 C 0.15 6.31 5.26 86.36 0.45 6.77 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.08 2.13 6.60 -2.39 -0.02 2.11 16 33 H 0.06 1.77 6.23 -2.39 -0.01 1.76 16 34 H 0.41 13.17 6.61 -92.70 -0.61 12.55 16 35 H 0.14 3.40 5.86 -2.91 -0.02 3.39 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 0.48 7.92 -2.39 -0.02 0.46 16 38 H 0.06 0.79 6.26 -2.39 -0.01 0.78 16 39 H 0.06 0.33 7.99 -2.39 -0.02 0.31 16 40 H 0.10 0.20 7.79 -2.39 -0.02 0.18 16 41 H 0.06 0.34 7.99 -2.39 -0.02 0.32 16 42 H 0.17 1.54 6.88 -2.91 -0.02 1.52 16 43 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.07 2.07 6.63 -2.39 -0.02 2.05 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 49 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 50 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 51 H 0.05 1.95 6.75 -2.39 -0.02 1.93 16 52 H 0.02 1.00 6.06 -2.39 -0.01 0.99 16 Total: -1.00 -72.25 402.93 2.17 -70.08 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.32 Total: 26.62 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 8.26 Total: 15.67 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -8.38 Total: -139.46 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.06 Total: -20.47 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -72.25 2.17 -70.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025630150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.692 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds