Wall clock time and date at job start Wed Apr 1 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46954 * 2 1 4 4 N 1.46501 * 109.46858 * 240.00811 * 2 1 3 5 5 C 1.34776 * 120.00249 * 84.99666 * 4 2 1 6 6 O 1.21557 * 119.99863 * 0.02562 * 5 4 2 7 7 C 1.47837 * 120.00196 * 179.97438 * 5 4 2 8 8 C 1.39528 * 119.63835 * 180.02562 * 7 5 4 9 9 C 1.38224 * 119.15944 * 179.97438 * 8 7 5 10 10 C 1.39453 * 118.43085 * 0.02562 * 9 8 7 11 11 N 1.39061 * 120.40294 * 179.97438 * 10 9 8 12 12 C 1.46507 * 120.00043 * 359.97438 * 11 10 9 13 13 C 1.46500 * 119.99948 * 179.97438 * 11 10 9 14 14 C 1.39462 * 119.19114 * 359.97438 * 10 9 8 15 15 N 1.31322 * 120.78111 * 359.74776 * 14 10 9 16 16 C 1.52992 * 109.47661 * 120.00559 * 2 1 3 17 17 H 1.09006 * 109.50035 * 180.02562 * 16 2 1 18 18 C 1.53040 * 109.52580 * 300.14540 * 16 2 1 19 19 C 1.53039 * 109.54198 * 181.32921 * 18 16 2 20 20 C 1.53622 * 109.24473 * 298.51455 * 19 18 16 21 21 N 1.46924 * 108.54399 * 54.84806 * 20 19 18 22 22 C 1.36946 * 120.62919 * 126.37114 * 21 20 19 23 23 H 1.08001 * 119.99879 * 207.53220 * 22 21 20 24 24 C 1.38814 * 119.99719 * 27.52961 * 22 21 20 25 25 N 1.31620 * 119.99709 * 25.84717 * 24 22 21 26 26 Si 1.86797 * 119.99712 * 205.56717 * 24 22 21 27 27 H 1.48493 * 109.47196 * 60.00574 * 26 24 22 28 28 H 1.48500 * 109.46719 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47268 * 299.99796 * 26 24 22 30 30 C 1.46928 * 118.74378 * 306.10142 * 21 20 19 31 31 H 1.08994 * 109.47590 * 59.99276 * 1 2 3 32 32 H 1.08999 * 109.46590 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46656 * 299.99178 * 1 2 3 34 34 H 0.97001 * 119.99882 * 264.99312 * 4 2 1 35 35 H 1.08002 * 120.42101 * 0.02562 * 8 7 5 36 36 H 1.08000 * 120.78374 * 180.02562 * 9 8 7 37 37 H 1.08999 * 109.46817 * 90.00311 * 12 11 10 38 38 H 1.08999 * 109.47041 * 210.00192 * 12 11 10 39 39 H 1.08999 * 109.46952 * 330.00167 * 12 11 10 40 40 H 1.09002 * 109.46907 * 59.99831 * 13 11 10 41 41 H 1.09005 * 109.47013 * 179.97438 * 13 11 10 42 42 H 1.08994 * 109.46975 * 299.99781 * 13 11 10 43 43 H 1.08000 * 119.60984 * 180.02562 * 14 10 9 44 44 H 1.08999 * 109.46221 * 301.35296 * 18 16 2 45 45 H 1.09003 * 109.45556 * 61.30999 * 18 16 2 46 46 H 1.09004 * 109.49499 * 58.58593 * 19 18 16 47 47 H 1.08994 * 109.49949 * 178.64805 * 19 18 16 48 48 H 1.09007 * 109.73672 * 295.11836 * 20 19 18 49 49 H 1.08997 * 109.67035 * 174.54572 * 20 19 18 50 50 H 0.96992 * 120.00366 * 4.05609 * 25 24 22 51 51 H 1.08992 * 109.58848 * 173.64203 * 30 21 20 52 52 H 1.08997 * 109.58525 * 294.06878 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0180 -2.3572 6 8 1.8582 1.1615 -2.4115 7 6 2.6402 -0.7146 -3.5643 8 6 2.7709 -0.0110 -4.7620 9 6 3.2336 -0.6720 -5.8844 10 6 3.5527 -2.0250 -5.7737 11 7 4.0211 -2.7301 -6.8770 12 6 4.1815 -2.0519 -8.1656 13 6 4.3542 -4.1511 -6.7506 14 6 3.3963 -2.6623 -4.5431 15 7 2.9592 -2.0023 -3.4953 16 6 2.0401 -0.7213 1.2491 17 1 3.1302 -0.7211 1.2497 18 6 1.5277 -0.0031 2.4996 19 6 2.0649 -0.7047 3.7491 20 6 1.5501 -2.1518 3.7780 21 7 1.9189 -2.8043 2.5143 22 6 2.6074 -3.9881 2.5153 23 1 3.2477 -4.2411 1.6832 24 6 2.4823 -4.8628 3.5859 25 7 1.3919 -4.8492 4.3229 26 14 3.8584 -6.0644 3.9759 27 1 5.1039 -5.3118 4.2713 28 1 3.4816 -6.8819 5.1569 29 1 4.0831 -6.9553 2.8092 30 6 1.5298 -2.1658 1.2496 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 2.2490 -1.6316 -1.1528 35 1 2.5147 1.0370 -4.8114 36 1 3.3453 -0.1528 -6.8248 37 1 5.1864 -1.6352 -8.2343 38 1 4.0286 -2.7669 -8.9740 39 1 3.4488 -1.2490 -8.2473 40 1 3.4686 -4.7057 -6.4402 41 1 4.7012 -4.5299 -7.7120 42 1 5.1402 -4.2752 -6.0057 43 1 3.6418 -3.7098 -4.4497 44 1 1.8690 1.0320 2.4894 45 1 0.4380 -0.0259 2.5105 46 1 3.1547 -0.7041 3.7265 47 1 1.7192 -0.1785 4.6388 48 1 0.4655 -2.1546 3.8877 49 1 2.0051 -2.6865 4.6117 50 1 0.6517 -4.2700 4.0832 51 1 1.9715 -2.7096 0.4146 52 1 0.4438 -2.1697 1.1572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025631771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:14 Heat of formation + Delta-G solvation = 24.694334 kcal Electronic energy + Delta-G solvation = -30771.414082 eV Core-core repulsion = 26771.356791 eV Total energy + Delta-G solvation = -4000.057291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.79090 -39.49554 -38.05642 -37.00969 -35.26406 -33.18104 -32.50140 -31.35785 -30.34845 -30.26718 -28.87777 -28.04770 -26.10579 -25.04915 -23.96988 -23.49354 -22.53953 -21.99755 -20.68815 -20.06094 -18.71357 -18.13616 -17.45713 -17.18484 -16.82544 -15.73750 -15.64872 -15.17865 -14.95152 -14.61394 -14.52988 -14.42879 -14.09351 -13.74226 -13.61229 -13.56906 -13.48559 -13.20172 -13.15809 -12.95530 -12.73379 -12.55928 -12.36211 -12.19097 -12.09891 -11.91952 -11.52523 -10.96132 -10.77973 -10.72956 -10.50519 -10.31580 -10.15716 -10.09699 -10.00369 -9.84371 -9.80994 -9.76008 -9.51383 -9.19473 -8.80507 -8.29538 -7.81668 -6.79957 -6.03651 -3.16216 0.73174 1.09358 2.54925 2.84628 3.34993 3.52216 3.56014 3.73800 3.88491 4.22741 4.38390 4.45040 4.56558 4.62788 4.75442 4.83202 4.89416 5.04475 5.08664 5.11882 5.16977 5.24775 5.25377 5.40883 5.46535 5.48303 5.55650 5.65303 5.69364 5.70887 5.83306 5.89074 6.01802 6.13939 6.18125 6.21484 6.22943 6.34663 6.46810 6.55194 6.59792 6.60081 6.73238 6.78584 6.80169 6.84757 6.93262 7.16941 7.26983 7.60323 7.89740 8.06421 8.41274 8.63228 9.17756 9.90904 10.36251 11.26602 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.002777 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.964324 B =10079.396847 C =12386.574345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.082 0.918 4 N -0.702 5.702 5 C 0.576 3.424 6 O -0.550 6.550 7 C 0.013 3.987 8 C -0.058 4.058 9 C -0.172 4.172 10 C 0.185 3.815 11 N -0.624 5.624 12 C 0.088 3.912 13 C 0.088 3.912 14 C 0.033 3.967 15 N -0.412 5.412 16 C -0.112 4.112 17 H 0.072 0.928 18 C -0.101 4.101 19 C -0.137 4.137 20 C 0.150 3.850 21 N -0.598 5.598 22 C -0.349 4.349 23 H 0.055 0.945 24 C -0.025 4.025 25 N -0.916 5.916 26 Si 1.064 2.936 27 H -0.294 1.294 28 H -0.286 1.286 29 H -0.293 1.293 30 C 0.154 3.846 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.159 0.841 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.016 0.984 49 H 0.077 0.923 50 H 0.269 0.731 51 H 0.051 0.949 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.096 7.080 -23.314 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.100 0.900 4 N -0.353 5.353 5 C 0.362 3.638 6 O -0.428 6.428 7 C -0.126 4.126 8 C -0.079 4.079 9 C -0.202 4.202 10 C 0.078 3.922 11 N -0.334 5.334 12 C -0.055 4.055 13 C -0.055 4.055 14 C -0.134 4.134 15 N -0.122 5.122 16 C -0.133 4.133 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.176 4.176 20 C 0.024 3.976 21 N -0.321 5.321 22 C -0.478 4.478 23 H 0.073 0.927 24 C -0.227 4.227 25 N -0.557 5.557 26 Si 0.894 3.106 27 H -0.221 1.221 28 H -0.212 1.212 29 H -0.220 1.220 30 C 0.027 3.973 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.250 0.750 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.176 0.824 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.034 0.966 49 H 0.096 0.904 50 H 0.080 0.920 51 H 0.070 0.930 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.362 6.172 -21.604 22.888 hybrid contribution -0.191 1.088 -2.089 2.363 sum 4.171 7.259 -23.693 25.129 Atomic orbital electron populations 1.22259 0.95470 1.02639 1.01885 1.21035 0.94140 0.96750 0.83675 0.89972 1.46055 1.65257 1.15054 1.08952 1.17754 0.77489 0.85892 0.82679 1.90742 1.51821 1.15296 1.84986 1.20851 1.06446 0.90699 0.94643 1.21844 0.93676 1.01274 0.91155 1.21063 1.06356 0.92851 0.99907 1.19109 0.92368 0.92049 0.88669 1.46259 1.69491 1.09768 1.07886 1.21770 1.01531 0.98174 0.84006 1.21767 1.00872 0.79930 1.02926 1.22365 1.03862 1.00452 0.86740 1.67395 1.06148 1.07885 1.30758 1.21925 1.00878 0.98003 0.92484 0.90910 1.21433 1.00271 0.97646 0.94543 1.22133 1.00755 0.98718 0.96011 1.21042 0.96172 0.89984 0.90417 1.44098 1.65916 1.22886 0.99225 1.19960 1.22348 0.96228 1.09241 0.92680 1.25812 1.00989 0.98781 0.97089 1.70782 1.03316 1.38017 1.43536 0.83532 0.75226 0.75739 0.76094 1.22126 1.21177 1.22026 1.20962 0.96263 0.90090 0.89962 0.92776 0.91760 0.91419 0.75043 0.83611 0.84372 0.92876 0.91044 0.91092 0.92031 0.90407 0.91998 0.82373 0.93252 0.92165 0.92438 0.93084 0.96606 0.90433 0.92028 0.93025 0.95995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.79 37.16 0.33 -2.15 16 2 C 0.15 2.37 2.41 -67.93 -0.16 2.21 16 3 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 4 N -0.70 -11.27 4.99 -54.75 -0.27 -11.54 16 5 C 0.58 9.38 7.76 -12.33 -0.10 9.29 16 6 O -0.55 -9.98 15.97 5.32 0.08 -9.90 16 7 C 0.01 0.19 6.74 -83.02 -0.56 -0.37 16 8 C -0.06 -0.68 9.62 -39.11 -0.38 -1.06 16 9 C -0.17 -1.62 9.28 -39.13 -0.36 -1.98 16 10 C 0.18 1.77 6.57 -83.67 -0.55 1.22 16 11 N -0.62 -4.31 3.39 -187.39 -0.64 -4.95 16 12 C 0.09 0.38 10.17 59.85 0.61 0.99 16 13 C 0.09 0.43 9.40 59.85 0.56 1.00 16 14 C 0.03 0.37 10.48 -17.31 -0.18 0.19 16 15 N -0.41 -5.76 9.52 -9.63 -0.09 -5.85 16 16 C -0.11 -1.99 2.33 -90.50 -0.21 -2.20 16 17 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 18 C -0.10 -1.71 4.77 -26.69 -0.13 -1.83 16 19 C -0.14 -2.62 6.10 -26.39 -0.16 -2.78 16 20 C 0.15 3.53 4.72 -3.49 -0.02 3.51 16 21 N -0.60 -14.97 2.85 -172.05 -0.49 -15.46 16 22 C -0.35 -9.76 9.49 -15.05 -0.14 -9.90 16 23 H 0.06 1.55 7.95 -52.49 -0.42 1.13 16 24 C -0.02 -0.70 4.66 -17.43 -0.08 -0.79 16 25 N -0.92 -27.57 12.46 55.49 0.69 -26.88 16 26 Si 1.06 25.41 29.99 -169.99 -5.10 20.32 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 C 0.15 3.21 5.29 -3.71 -0.02 3.19 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.01 6.32 -51.93 -0.33 0.68 16 33 H 0.07 0.94 6.46 -51.93 -0.34 0.61 16 34 H 0.41 6.72 6.28 -40.82 -0.26 6.46 16 35 H 0.15 1.60 7.63 -52.49 -0.40 1.20 16 36 H 0.14 0.92 6.25 -52.49 -0.33 0.59 16 37 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.20 7.92 -51.93 -0.41 -0.22 16 39 H 0.07 0.28 6.23 -51.93 -0.32 -0.04 16 40 H 0.06 0.30 7.95 -51.93 -0.41 -0.11 16 41 H 0.08 0.23 7.79 -51.93 -0.40 -0.17 16 42 H 0.06 0.31 7.95 -51.93 -0.41 -0.10 16 43 H 0.16 1.46 6.74 -52.49 -0.35 1.11 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.99 6.50 -51.93 -0.34 0.65 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 49 H 0.08 2.05 6.31 -51.93 -0.33 1.72 16 50 H 0.27 8.15 6.69 -40.82 -0.27 7.88 16 51 H 0.05 1.09 6.52 -51.93 -0.34 0.75 16 52 H 0.02 0.47 6.18 -51.93 -0.32 0.15 16 LS Contribution 401.04 15.07 6.04 6.04 Total: -1.00 -33.63 401.04 -9.44 -43.07 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.12 Total: 6.62 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.55 Total: -1.47 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.80 Total: -64.68 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.10 Total: 20.32 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.63 -9.44 -43.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025631771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.761 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds