Wall clock time and date at job start Wed Apr 1 2020 05:17:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09007 * 109.46954 * 2 1
4 4 N 1.46501 * 109.46858 * 240.00811 * 2 1 3
5 5 C 1.34776 * 120.00249 * 84.99666 * 4 2 1
6 6 O 1.21557 * 119.99863 * 0.02562 * 5 4 2
7 7 C 1.47837 * 120.00196 * 179.97438 * 5 4 2
8 8 C 1.39528 * 119.63835 * 180.02562 * 7 5 4
9 9 C 1.38224 * 119.15944 * 179.97438 * 8 7 5
10 10 C 1.39453 * 118.43085 * 0.02562 * 9 8 7
11 11 N 1.39061 * 120.40294 * 179.97438 * 10 9 8
12 12 C 1.46507 * 120.00043 * 359.97438 * 11 10 9
13 13 C 1.46500 * 119.99948 * 179.97438 * 11 10 9
14 14 C 1.39462 * 119.19114 * 359.97438 * 10 9 8
15 15 N 1.31322 * 120.78111 * 359.74776 * 14 10 9
16 16 C 1.52992 * 109.47661 * 120.00559 * 2 1 3
17 17 H 1.09006 * 109.50035 * 180.02562 * 16 2 1
18 18 C 1.53040 * 109.52580 * 300.14540 * 16 2 1
19 19 C 1.53039 * 109.54198 * 181.32921 * 18 16 2
20 20 C 1.53622 * 109.24473 * 298.51455 * 19 18 16
21 21 N 1.46924 * 108.54399 * 54.84806 * 20 19 18
22 22 C 1.36946 * 120.62919 * 126.37114 * 21 20 19
23 23 H 1.08001 * 119.99879 * 207.53220 * 22 21 20
24 24 C 1.38814 * 119.99719 * 27.52961 * 22 21 20
25 25 N 1.31620 * 119.99709 * 25.84717 * 24 22 21
26 26 Si 1.86797 * 119.99712 * 205.56717 * 24 22 21
27 27 H 1.48493 * 109.47196 * 60.00574 * 26 24 22
28 28 H 1.48500 * 109.46719 * 180.02562 * 26 24 22
29 29 H 1.48502 * 109.47268 * 299.99796 * 26 24 22
30 30 C 1.46928 * 118.74378 * 306.10142 * 21 20 19
31 31 H 1.08994 * 109.47590 * 59.99276 * 1 2 3
32 32 H 1.08999 * 109.46590 * 180.02562 * 1 2 3
33 33 H 1.09006 * 109.46656 * 299.99178 * 1 2 3
34 34 H 0.97001 * 119.99882 * 264.99312 * 4 2 1
35 35 H 1.08002 * 120.42101 * 0.02562 * 8 7 5
36 36 H 1.08000 * 120.78374 * 180.02562 * 9 8 7
37 37 H 1.08999 * 109.46817 * 90.00311 * 12 11 10
38 38 H 1.08999 * 109.47041 * 210.00192 * 12 11 10
39 39 H 1.08999 * 109.46952 * 330.00167 * 12 11 10
40 40 H 1.09002 * 109.46907 * 59.99831 * 13 11 10
41 41 H 1.09005 * 109.47013 * 179.97438 * 13 11 10
42 42 H 1.08994 * 109.46975 * 299.99781 * 13 11 10
43 43 H 1.08000 * 119.60984 * 180.02562 * 14 10 9
44 44 H 1.08999 * 109.46221 * 301.35296 * 18 16 2
45 45 H 1.09003 * 109.45556 * 61.30999 * 18 16 2
46 46 H 1.09004 * 109.49499 * 58.58593 * 19 18 16
47 47 H 1.08994 * 109.49949 * 178.64805 * 19 18 16
48 48 H 1.09007 * 109.73672 * 295.11836 * 20 19 18
49 49 H 1.08997 * 109.67035 * 174.54572 * 20 19 18
50 50 H 0.96992 * 120.00366 * 4.05609 * 25 24 22
51 51 H 1.08992 * 109.58848 * 173.64203 * 30 21 20
52 52 H 1.08997 * 109.58525 * 294.06878 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6905 -1.1963
5 6 2.1469 -0.0180 -2.3572
6 8 1.8582 1.1615 -2.4115
7 6 2.6402 -0.7146 -3.5643
8 6 2.7709 -0.0110 -4.7620
9 6 3.2336 -0.6720 -5.8844
10 6 3.5527 -2.0250 -5.7737
11 7 4.0211 -2.7301 -6.8770
12 6 4.1815 -2.0519 -8.1656
13 6 4.3542 -4.1511 -6.7506
14 6 3.3963 -2.6623 -4.5431
15 7 2.9592 -2.0023 -3.4953
16 6 2.0401 -0.7213 1.2491
17 1 3.1302 -0.7211 1.2497
18 6 1.5277 -0.0031 2.4996
19 6 2.0649 -0.7047 3.7491
20 6 1.5501 -2.1518 3.7780
21 7 1.9189 -2.8043 2.5143
22 6 2.6074 -3.9881 2.5153
23 1 3.2477 -4.2411 1.6832
24 6 2.4823 -4.8628 3.5859
25 7 1.3919 -4.8492 4.3229
26 14 3.8584 -6.0644 3.9759
27 1 5.1039 -5.3118 4.2713
28 1 3.4816 -6.8819 5.1569
29 1 4.0831 -6.9553 2.8092
30 6 1.5298 -2.1658 1.2496
31 1 -0.3634 0.5139 -0.8898
32 1 -0.3632 -1.0277 0.0005
33 1 -0.3633 0.5137 0.8901
34 1 2.2490 -1.6316 -1.1528
35 1 2.5147 1.0370 -4.8114
36 1 3.3453 -0.1528 -6.8248
37 1 5.1864 -1.6352 -8.2343
38 1 4.0286 -2.7669 -8.9740
39 1 3.4488 -1.2490 -8.2473
40 1 3.4686 -4.7057 -6.4402
41 1 4.7012 -4.5299 -7.7120
42 1 5.1402 -4.2752 -6.0057
43 1 3.6418 -3.7098 -4.4497
44 1 1.8690 1.0320 2.4894
45 1 0.4380 -0.0259 2.5105
46 1 3.1547 -0.7041 3.7265
47 1 1.7192 -0.1785 4.6388
48 1 0.4655 -2.1546 3.8877
49 1 2.0051 -2.6865 4.6117
50 1 0.6517 -4.2700 4.0832
51 1 1.9715 -2.7096 0.4146
52 1 0.4438 -2.1697 1.1572
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001025631771.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:17:12
Heat of formation + Delta-G solvation = 3.358482 kcal
Electronic energy + Delta-G solvation = -30772.339274 eV
Core-core repulsion = 26771.356791 eV
Total energy + Delta-G solvation = -4000.982483 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-41.73523 -40.69439 -39.51009 -37.75300 -36.86058 -34.83357 -33.39468 -32.62555
-32.21776 -31.32410 -29.51834 -29.30482 -27.07666 -26.86648 -25.27686 -24.32904
-24.02513 -23.22810 -22.05032 -21.32031 -20.24989 -19.42111 -19.05797 -18.14735
-17.69823 -16.84598 -16.43967 -16.35625 -16.20340 -15.93780 -15.90575 -15.50949
-15.43583 -15.26308 -15.10869 -14.94218 -14.43484 -14.37404 -14.29311 -13.86391
-13.75276 -13.56405 -13.54171 -13.46540 -13.05891 -12.91668 -12.75137 -12.61853
-12.60952 -12.11023 -11.90615 -11.88625 -11.73393 -11.61584 -11.46000 -11.42787
-11.21953 -11.06696 -10.65078 -10.53084 -10.41194 -10.09765 -8.87764 -8.48137
-8.24577 -5.36143 -0.18386 0.27966 1.58294 1.66115 1.75900 1.84974
1.99780 2.18602 2.66560 2.92048 3.22740 3.27498 3.48032 3.71416
3.74492 3.84996 3.89261 3.96628 4.01137 4.06976 4.24343 4.25772
4.34154 4.37658 4.47554 4.49475 4.54192 4.57830 4.69005 4.73316
4.74705 4.77947 4.85158 4.87626 4.89046 4.92569 4.94477 5.03349
5.09232 5.13425 5.16147 5.24322 5.30106 5.37285 5.39010 5.51988
5.58077 5.86181 6.06729 6.16778 6.41604 6.45770 6.86801 7.08913
7.19522 7.81145 8.25828 9.02061
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.010496 B = 0.002777 C = 0.002260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2666.964324 B =10079.396847 C =12386.574345
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.156 3.844
3 H 0.085 0.915
4 N -0.705 5.705
5 C 0.575 3.425
6 O -0.576 6.576
7 C -0.024 4.024
8 C -0.057 4.057
9 C -0.170 4.170
10 C 0.196 3.804
11 N -0.618 5.618
12 C 0.079 3.921
13 C 0.079 3.921
14 C 0.018 3.982
15 N -0.436 5.436
16 C -0.096 4.096
17 H 0.059 0.941
18 C -0.097 4.097
19 C -0.127 4.127
20 C 0.153 3.847
21 N -0.616 5.616
22 C -0.355 4.355
23 H 0.048 0.952
24 C -0.075 4.075
25 N -0.942 5.942
26 Si 1.113 2.887
27 H -0.282 1.282
28 H -0.291 1.291
29 H -0.275 1.275
30 C 0.156 3.844
31 H 0.052 0.948
32 H 0.053 0.947
33 H 0.082 0.918
34 H 0.409 0.591
35 H 0.149 0.851
36 H 0.170 0.830
37 H 0.062 0.938
38 H 0.092 0.908
39 H 0.077 0.923
40 H 0.062 0.938
41 H 0.103 0.897
42 H 0.061 0.939
43 H 0.172 0.828
44 H 0.080 0.920
45 H 0.069 0.931
46 H 0.048 0.952
47 H 0.077 0.923
48 H 0.006 0.994
49 H 0.042 0.958
50 H 0.254 0.746
51 H 0.042 0.958
52 H 0.022 0.978
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.209 7.660 -25.814 27.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.051 3.949
3 H 0.103 0.897
4 N -0.356 5.356
5 C 0.362 3.638
6 O -0.456 6.456
7 C -0.163 4.163
8 C -0.079 4.079
9 C -0.199 4.199
10 C 0.086 3.914
11 N -0.325 5.325
12 C -0.063 4.063
13 C -0.063 4.063
14 C -0.150 4.150
15 N -0.147 5.147
16 C -0.117 4.117
17 H 0.077 0.923
18 C -0.135 4.135
19 C -0.166 4.166
20 C 0.028 3.972
21 N -0.341 5.341
22 C -0.485 4.485
23 H 0.066 0.934
24 C -0.271 4.271
25 N -0.584 5.584
26 Si 0.938 3.062
27 H -0.208 1.208
28 H -0.217 1.217
29 H -0.201 1.201
30 C 0.030 3.970
31 H 0.072 0.928
32 H 0.072 0.928
33 H 0.101 0.899
34 H 0.246 0.754
35 H 0.167 0.833
36 H 0.188 0.812
37 H 0.080 0.920
38 H 0.111 0.889
39 H 0.095 0.905
40 H 0.080 0.920
41 H 0.121 0.879
42 H 0.079 0.921
43 H 0.189 0.811
44 H 0.098 0.902
45 H 0.087 0.913
46 H 0.067 0.933
47 H 0.095 0.905
48 H 0.024 0.976
49 H 0.060 0.940
50 H 0.064 0.936
51 H 0.061 0.939
52 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges 5.485 6.767 -24.162 25.684
hybrid contribution -0.495 0.817 -1.518 1.794
sum 4.990 7.584 -25.680 27.237
Atomic orbital electron populations
1.22197 0.94587 1.02155 1.02590 1.20937 0.94690 0.96380 0.82876
0.89736 1.46077 1.65444 1.14862 1.09173 1.18101 0.76823 0.85684
0.83172 1.90703 1.53174 1.16244 1.85490 1.20629 1.09641 0.91303
0.94698 1.21932 0.93458 1.01422 0.91070 1.21335 1.05470 0.92832
1.00311 1.19186 0.91037 0.92283 0.88924 1.46622 1.67453 1.10517
1.07925 1.22035 1.02258 0.98952 0.83066 1.21973 1.00982 0.78864
1.04479 1.22650 1.04156 1.01087 0.87089 1.67276 1.07003 1.08083
1.32330 1.21707 0.99888 0.95971 0.94145 0.92261 1.21437 1.00765
0.98752 0.92525 1.22002 1.00131 0.95935 0.98486 1.20946 0.95332
0.92277 0.88685 1.44339 1.66127 1.22631 1.00968 1.20192 1.22035
0.97255 1.09007 0.93425 1.27148 1.02205 1.00576 0.97220 1.70901
1.03894 1.39016 1.44558 0.82871 0.72952 0.74187 0.76174 1.20788
1.21747 1.20124 1.21022 0.96164 0.91788 0.87983 0.92849 0.92760
0.89896 0.75399 0.83313 0.81242 0.91989 0.88916 0.90463 0.91968
0.87861 0.92066 0.81070 0.90162 0.91265 0.93271 0.90492 0.97566
0.93974 0.93595 0.93915 0.95998
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.62 8.79 71.98 0.63 -3.99 16
2 C 0.16 4.92 2.41 44.99 0.11 5.02 16
3 H 0.08 2.69 7.58 -2.38 -0.02 2.67 16
4 N -0.71 -23.12 4.99 -445.41 -2.22 -25.35 16
5 C 0.57 19.14 7.76 86.78 0.67 19.81 16
6 O -0.58 -21.14 15.97 -3.89 -0.06 -21.21 16
7 C -0.02 -0.71 6.74 41.84 0.28 -0.43 16
8 C -0.06 -1.32 9.62 22.58 0.22 -1.10 16
9 C -0.17 -2.88 9.28 22.56 0.21 -2.67 16
10 C 0.20 3.39 6.57 38.58 0.25 3.64 16
11 N -0.62 -6.75 3.39 -746.78 -2.53 -9.28 16
12 C 0.08 0.39 10.17 127.77 1.30 1.69 16
13 C 0.08 0.57 9.40 127.77 1.20 1.77 16
14 C 0.02 0.40 10.48 85.06 0.89 1.29 16
15 N -0.44 -12.44 9.52 -184.39 -1.76 -14.20 16
16 C -0.10 -3.38 2.33 -10.72 -0.02 -3.41 16
17 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16
18 C -0.10 -3.10 4.77 30.62 0.15 -2.96 16
19 C -0.13 -4.72 6.10 30.82 0.19 -4.54 16
20 C 0.15 7.38 4.72 86.51 0.41 7.78 16
21 N -0.62 -31.63 2.85 -698.25 -1.99 -33.62 16
22 C -0.36 -20.36 9.49 84.03 0.80 -19.56 16
23 H 0.05 2.75 7.95 -2.91 -0.02 2.73 16
24 C -0.08 -4.36 4.66 84.86 0.40 -3.96 16
25 N -0.94 -58.32 12.46 21.65 0.27 -58.05 16
26 Si 1.11 51.91 29.99 68.60 2.06 53.96 16
27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
28 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16
29 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16
30 C 0.16 6.64 5.29 86.36 0.46 7.09 16
31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
32 H 0.05 1.69 6.32 -2.39 -0.02 1.68 16
33 H 0.08 2.16 6.46 -2.38 -0.02 2.15 16
34 H 0.41 13.87 6.28 -92.71 -0.58 13.29 16
35 H 0.15 3.23 7.63 -2.91 -0.02 3.21 16
36 H 0.17 1.69 6.25 -2.91 -0.02 1.68 16
37 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16
38 H 0.09 0.12 7.92 -2.39 -0.02 0.10 16
39 H 0.08 0.32 6.23 -2.39 -0.01 0.31 16
40 H 0.06 0.48 7.95 -2.39 -0.02 0.46 16
41 H 0.10 0.24 7.79 -2.38 -0.02 0.23 16
42 H 0.06 0.49 7.95 -2.39 -0.02 0.47 16
43 H 0.17 3.07 6.74 -2.91 -0.02 3.05 16
44 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16
45 H 0.07 2.13 6.50 -2.39 -0.02 2.11 16
46 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16
47 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16
48 H 0.01 0.31 7.87 -2.38 -0.02 0.29 16
49 H 0.04 2.30 6.31 -2.39 -0.02 2.29 16
50 H 0.25 16.04 6.69 -92.71 -0.62 15.42 16
51 H 0.04 1.86 6.52 -2.39 -0.02 1.85 16
52 H 0.02 0.95 6.18 -2.39 -0.01 0.93 16
Total: -1.00 -75.27 401.04 2.40 -72.86
By element:
Atomic # 1 Polarization: 28.88 SS G_CDS: 0.50 Total: 29.38 kcal
Atomic # 6 Polarization: -2.64 SS G_CDS: 8.14 Total: 5.50 kcal
Atomic # 7 Polarization: -132.27 SS G_CDS: -8.23 Total: -140.50 kcal
Atomic # 8 Polarization: -21.14 SS G_CDS: -0.06 Total: -21.21 kcal
Atomic # 14 Polarization: 51.91 SS G_CDS: 2.06 Total: 53.96 kcal
Total: -75.27 2.40 -72.86 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025631771.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.221 kcal
(2) G-P(sol) polarization free energy of solvation -75.267 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.955 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.358 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.34 seconds