Wall clock time and date at job start Wed Apr 1 2020 05:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47165 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99854 * 2 1 3 5 5 C 1.34770 * 120.00032 * 274.99887 * 4 2 1 6 6 O 1.21562 * 120.00164 * 0.02562 * 5 4 2 7 7 C 1.47848 * 119.99965 * 179.97438 * 5 4 2 8 8 C 1.39526 * 119.63378 * 179.97438 * 7 5 4 9 9 C 1.38232 * 119.15625 * 179.97438 * 8 7 5 10 10 C 1.39446 * 118.42611 * 0.02562 * 9 8 7 11 11 N 1.39073 * 120.40095 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99445 * 359.97438 * 11 10 9 13 13 C 1.46492 * 120.00092 * 180.02562 * 11 10 9 14 14 C 1.39470 * 119.19993 * 359.97438 * 10 9 8 15 15 N 1.31317 * 120.77150 * 359.74936 * 14 10 9 16 16 C 1.52995 * 109.47294 * 239.99928 * 2 1 3 17 17 H 1.09005 * 109.52411 * 299.92149 * 16 2 1 18 18 C 1.53036 * 109.50129 * 60.00007 * 16 2 1 19 19 C 1.53038 * 109.54474 * 181.31781 * 18 16 2 20 20 C 1.53198 * 109.30917 * 298.63857 * 19 18 16 21 21 N 1.46927 * 108.77694 * 54.63122 * 20 19 18 22 22 C 1.36936 * 120.62750 * 126.40871 * 21 20 19 23 23 H 1.08000 * 120.00070 * 207.67278 * 22 21 20 24 24 C 1.38812 * 119.99785 * 27.68124 * 22 21 20 25 25 N 1.31617 * 120.00378 * 17.35072 * 24 22 21 26 26 Si 1.86807 * 119.99569 * 197.35122 * 24 22 21 27 27 H 1.48498 * 109.47223 * 60.00170 * 26 24 22 28 28 H 1.48507 * 109.46987 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47060 * 299.99503 * 26 24 22 30 30 C 1.46919 * 118.73967 * 306.39379 * 21 20 19 31 31 H 1.09002 * 109.47304 * 300.00495 * 1 2 3 32 32 H 1.09006 * 109.46807 * 60.00063 * 1 2 3 33 33 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99922 * 95.00151 * 4 2 1 35 35 H 1.08001 * 120.42333 * 359.95746 * 8 7 5 36 36 H 1.07998 * 120.78384 * 180.02562 * 9 8 7 37 37 H 1.08996 * 109.47197 * 60.00815 * 12 11 10 38 38 H 1.09007 * 109.46501 * 180.02562 * 12 11 10 39 39 H 1.08998 * 109.47475 * 300.00221 * 12 11 10 40 40 H 1.08995 * 109.47670 * 89.99320 * 13 11 10 41 41 H 1.09000 * 109.47091 * 209.99890 * 13 11 10 42 42 H 1.09007 * 109.47135 * 329.99347 * 13 11 10 43 43 H 1.07998 * 119.61231 * 179.97438 * 14 10 9 44 44 H 1.09007 * 109.46049 * 301.34143 * 18 16 2 45 45 H 1.09004 * 109.45575 * 61.30859 * 18 16 2 46 46 H 1.08998 * 109.49290 * 58.58318 * 19 18 16 47 47 H 1.08996 * 109.50117 * 178.65413 * 19 18 16 48 48 H 1.09001 * 109.58174 * 174.42265 * 20 19 18 49 49 H 1.09000 * 109.58082 * 294.84149 * 20 19 18 50 50 H 0.96999 * 120.00020 * 180.02562 * 25 24 22 51 51 H 1.09009 * 109.58563 * 293.81960 * 30 21 20 52 52 H 1.09001 * 109.58924 * 173.39488 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8575 1.1611 2.4118 7 6 2.6392 -0.7154 3.5645 8 6 2.7700 -0.0118 4.7622 9 6 3.2307 -0.6734 5.8851 10 6 3.5487 -2.0266 5.7745 11 7 4.0161 -2.7322 6.8780 12 6 4.1775 -2.0538 8.1664 13 6 4.3481 -4.1534 6.7517 14 6 3.3923 -2.6639 4.5438 15 7 2.9469 -2.0059 3.4983 16 6 2.0400 -0.7212 -1.2492 17 1 1.6783 -1.7495 -1.2493 18 6 1.5303 -0.0004 -2.4992 19 6 2.0127 -0.7399 -3.7492 20 6 3.5443 -0.7370 -3.7801 21 7 4.0439 -1.2971 -2.5169 22 6 4.9328 -2.3388 -2.5189 23 1 4.9619 -3.0255 -1.6858 24 6 5.7965 -2.5121 -3.5917 25 7 6.0121 -1.5205 -4.4299 26 14 6.6529 -4.1527 -3.8457 27 1 5.6357 -5.2191 -4.0282 28 1 7.5148 -4.0796 -5.0528 29 1 7.4887 -4.4639 -2.6582 30 6 3.5719 -0.7182 -1.2518 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6318 1.1527 35 1 2.5149 1.0365 4.8114 36 1 3.3416 -0.1545 6.8258 37 1 3.2148 -1.6612 8.4935 38 1 4.5515 -2.7623 8.9056 39 1 4.8869 -1.2332 8.0587 40 1 5.3957 -4.2582 6.4698 41 1 4.1768 -4.6526 7.7054 42 1 3.7187 -4.6069 5.9860 43 1 3.6370 -3.7116 4.4505 44 1 0.4405 0.0204 -2.4874 45 1 1.9128 1.0203 -2.5111 46 1 1.6513 -1.7680 -3.7257 47 1 1.6294 -0.2397 -4.6385 48 1 3.8941 -1.3461 -4.6136 49 1 3.9054 0.2850 -3.8948 50 1 6.6154 -1.6417 -5.1797 51 1 3.9354 0.3054 -1.1603 52 1 3.9400 -1.3148 -0.4171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025631772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:20 Heat of formation + Delta-G solvation = 25.106748 kcal Electronic energy + Delta-G solvation = -30721.288343 eV Core-core repulsion = 26721.248935 eV Total energy + Delta-G solvation = -4000.039408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.74560 -39.38535 -37.83849 -36.95734 -35.11899 -33.00905 -32.44525 -31.31221 -30.47341 -30.14501 -28.85369 -28.36578 -26.07557 -25.11074 -23.66856 -23.41024 -22.23308 -21.81712 -20.63736 -20.13077 -19.12405 -18.06134 -17.31387 -16.90708 -16.52103 -15.70262 -15.65083 -15.16210 -14.88333 -14.71655 -14.54221 -14.31752 -14.01501 -13.71261 -13.50463 -13.36542 -13.25084 -13.14556 -13.05793 -12.94107 -12.54510 -12.48232 -12.37047 -12.17743 -12.10942 -11.70982 -11.40965 -11.02520 -10.88997 -10.68504 -10.58423 -10.34428 -10.17338 -10.08559 -10.04291 -9.81320 -9.77731 -9.61057 -9.40376 -9.32145 -8.73388 -8.38898 -7.78320 -6.58869 -5.71707 -3.13410 0.77435 1.13279 2.57740 2.90098 3.39779 3.42324 3.47697 3.49080 3.93113 4.22050 4.45102 4.49045 4.54328 4.57594 4.80171 4.84756 4.95820 5.06683 5.09300 5.14332 5.19731 5.25464 5.37637 5.46424 5.52753 5.54206 5.65488 5.68464 5.70008 5.85451 5.91001 5.92673 6.14536 6.18665 6.21063 6.24544 6.41981 6.45135 6.54357 6.62862 6.71233 6.72538 6.81931 6.87205 6.93760 6.97360 7.09784 7.48129 7.63908 7.74842 7.86003 7.93821 8.47345 8.52285 9.28771 9.92681 10.49806 11.36670 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.002851 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.477141 B = 9817.563272 C =12090.513998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.086 0.914 4 N -0.700 5.700 5 C 0.577 3.423 6 O -0.549 6.549 7 C 0.015 3.985 8 C -0.058 4.058 9 C -0.169 4.169 10 C 0.184 3.816 11 N -0.625 5.625 12 C 0.091 3.909 13 C 0.086 3.914 14 C 0.030 3.970 15 N -0.412 5.412 16 C -0.110 4.110 17 H 0.072 0.928 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.250 4.250 23 H 0.065 0.935 24 C 0.001 3.999 25 N -0.903 5.903 26 Si 0.901 3.099 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.156 3.844 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.410 0.590 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.159 0.841 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.086 0.914 49 H 0.016 0.984 50 H 0.253 0.747 51 H 0.016 0.984 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.145 -1.839 23.127 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.104 0.896 4 N -0.350 5.350 5 C 0.363 3.637 6 O -0.426 6.426 7 C -0.124 4.124 8 C -0.079 4.079 9 C -0.199 4.199 10 C 0.077 3.923 11 N -0.335 5.335 12 C -0.052 4.052 13 C -0.056 4.056 14 C -0.137 4.137 15 N -0.122 5.122 16 C -0.131 4.131 17 H 0.090 0.910 18 C -0.139 4.139 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.313 5.313 22 C -0.379 4.379 23 H 0.082 0.918 24 C -0.197 4.197 25 N -0.548 5.548 26 Si 0.731 3.269 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.210 1.210 30 C 0.029 3.971 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.246 0.754 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.176 0.824 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.104 0.896 49 H 0.034 0.966 50 H 0.063 0.937 51 H 0.034 0.966 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.258 -1.514 22.334 23.860 hybrid contribution 0.819 -0.922 0.727 1.432 sum -7.439 -2.436 23.061 24.353 Atomic orbital electron populations 1.22200 0.95741 1.01871 1.02066 1.21080 0.93467 0.97541 0.83750 0.89605 1.45926 1.65348 1.14794 1.08928 1.17720 0.77479 0.85889 0.82644 1.90751 1.51666 1.15248 1.84979 1.20858 1.06351 0.90603 0.94622 1.21857 0.93635 1.01306 0.91139 1.21021 1.06191 0.92725 0.99977 1.19097 0.92468 0.92076 0.88639 1.46250 1.69621 1.09656 1.07933 1.21708 1.01394 0.98078 0.84036 1.21806 1.00915 0.80007 1.02903 1.22392 1.03961 1.00422 0.86889 1.67375 1.06310 1.08009 1.30537 1.21954 0.99525 0.99230 0.92382 0.91008 1.21446 0.98711 0.99030 0.94708 1.22175 1.00868 0.99331 0.95717 1.20795 0.87463 0.97187 0.90243 1.44038 1.49683 1.38081 0.99529 1.19146 1.11128 1.02195 1.05470 0.91773 1.25019 0.97329 0.97435 0.99949 1.70036 1.38154 1.29366 1.17242 0.86388 0.79124 0.84127 0.77244 1.21077 1.21715 1.20952 1.20865 0.89902 0.96344 0.90002 0.92681 0.91329 0.92682 0.75371 0.83592 0.84511 0.92420 0.90462 0.92349 0.92613 0.91061 0.90784 0.82354 0.93137 0.92615 0.92804 0.93308 0.89603 0.96560 0.93678 0.96634 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.13 37.16 0.34 -1.86 16 2 C 0.15 2.32 2.16 -67.93 -0.15 2.17 16 3 H 0.09 1.50 7.58 -51.93 -0.39 1.10 16 4 N -0.70 -10.99 4.47 -54.75 -0.24 -11.23 16 5 C 0.58 9.45 7.76 -12.33 -0.10 9.36 16 6 O -0.55 -10.16 15.97 5.31 0.08 -10.07 16 7 C 0.02 0.22 6.74 -83.02 -0.56 -0.34 16 8 C -0.06 -0.70 9.62 -39.10 -0.38 -1.08 16 9 C -0.17 -1.65 9.40 -39.13 -0.37 -2.02 16 10 C 0.18 1.78 6.57 -83.67 -0.55 1.23 16 11 N -0.62 -4.39 3.39 -187.39 -0.64 -5.02 16 12 C 0.09 0.41 9.42 59.85 0.56 0.98 16 13 C 0.09 0.42 10.16 59.84 0.61 1.03 16 14 C 0.03 0.33 10.37 -17.31 -0.18 0.15 16 15 N -0.41 -5.66 9.52 -9.63 -0.09 -5.75 16 16 C -0.11 -1.94 1.97 -90.50 -0.18 -2.12 16 17 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 18 C -0.10 -1.73 4.85 -26.69 -0.13 -1.86 16 19 C -0.14 -2.75 6.08 -26.61 -0.16 -2.92 16 20 C 0.17 4.13 5.31 -3.71 -0.02 4.11 16 21 N -0.59 -15.14 2.99 -172.32 -0.52 -15.65 16 22 C -0.25 -6.98 9.59 -15.06 -0.14 -7.12 16 23 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 24 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 25 N -0.90 -26.73 11.19 55.49 0.62 -26.11 16 26 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 C 0.16 3.38 5.56 -3.71 -0.02 3.36 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.87 6.40 -51.93 -0.33 0.54 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.41 6.28 7.74 -40.82 -0.32 5.96 16 35 H 0.15 1.67 7.63 -52.49 -0.40 1.27 16 36 H 0.14 0.97 6.85 -52.49 -0.36 0.61 16 37 H 0.06 0.24 7.97 -51.93 -0.41 -0.17 16 38 H 0.08 0.21 7.80 -51.93 -0.40 -0.19 16 39 H 0.06 0.26 7.97 -51.93 -0.41 -0.15 16 40 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.22 7.92 -51.93 -0.41 -0.19 16 42 H 0.07 0.35 6.20 -51.93 -0.32 0.03 16 43 H 0.16 1.39 6.14 -52.49 -0.32 1.07 16 44 H 0.05 0.74 6.36 -51.93 -0.33 0.41 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 51 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 52 H 0.05 1.15 7.45 -51.93 -0.39 0.76 16 LS Contribution 407.57 15.07 6.14 6.14 Total: -1.00 -33.44 407.57 -9.65 -43.09 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.47 Total: 4.61 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.50 Total: 3.02 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -0.87 Total: -63.77 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.44 -9.65 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025631772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.199 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds