Wall clock time and date at job start Wed Apr 1 2020 05:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47165 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99854 * 2 1 3 5 5 C 1.34770 * 120.00032 * 274.99887 * 4 2 1 6 6 O 1.21562 * 120.00164 * 0.02562 * 5 4 2 7 7 C 1.47848 * 119.99965 * 179.97438 * 5 4 2 8 8 C 1.39526 * 119.63378 * 179.97438 * 7 5 4 9 9 C 1.38232 * 119.15625 * 179.97438 * 8 7 5 10 10 C 1.39446 * 118.42611 * 0.02562 * 9 8 7 11 11 N 1.39073 * 120.40095 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99445 * 359.97438 * 11 10 9 13 13 C 1.46492 * 120.00092 * 180.02562 * 11 10 9 14 14 C 1.39470 * 119.19993 * 359.97438 * 10 9 8 15 15 N 1.31317 * 120.77150 * 359.74936 * 14 10 9 16 16 C 1.52995 * 109.47294 * 239.99928 * 2 1 3 17 17 H 1.09005 * 109.52411 * 299.92149 * 16 2 1 18 18 C 1.53036 * 109.50129 * 60.00007 * 16 2 1 19 19 C 1.53038 * 109.54474 * 181.31781 * 18 16 2 20 20 C 1.53198 * 109.30917 * 298.63857 * 19 18 16 21 21 N 1.46927 * 108.77694 * 54.63122 * 20 19 18 22 22 C 1.36936 * 120.62750 * 126.40871 * 21 20 19 23 23 H 1.08000 * 120.00070 * 207.67278 * 22 21 20 24 24 C 1.38812 * 119.99785 * 27.68124 * 22 21 20 25 25 N 1.31617 * 120.00378 * 17.35072 * 24 22 21 26 26 Si 1.86807 * 119.99569 * 197.35122 * 24 22 21 27 27 H 1.48498 * 109.47223 * 60.00170 * 26 24 22 28 28 H 1.48507 * 109.46987 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47060 * 299.99503 * 26 24 22 30 30 C 1.46919 * 118.73967 * 306.39379 * 21 20 19 31 31 H 1.09002 * 109.47304 * 300.00495 * 1 2 3 32 32 H 1.09006 * 109.46807 * 60.00063 * 1 2 3 33 33 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99922 * 95.00151 * 4 2 1 35 35 H 1.08001 * 120.42333 * 359.95746 * 8 7 5 36 36 H 1.07998 * 120.78384 * 180.02562 * 9 8 7 37 37 H 1.08996 * 109.47197 * 60.00815 * 12 11 10 38 38 H 1.09007 * 109.46501 * 180.02562 * 12 11 10 39 39 H 1.08998 * 109.47475 * 300.00221 * 12 11 10 40 40 H 1.08995 * 109.47670 * 89.99320 * 13 11 10 41 41 H 1.09000 * 109.47091 * 209.99890 * 13 11 10 42 42 H 1.09007 * 109.47135 * 329.99347 * 13 11 10 43 43 H 1.07998 * 119.61231 * 179.97438 * 14 10 9 44 44 H 1.09007 * 109.46049 * 301.34143 * 18 16 2 45 45 H 1.09004 * 109.45575 * 61.30859 * 18 16 2 46 46 H 1.08998 * 109.49290 * 58.58318 * 19 18 16 47 47 H 1.08996 * 109.50117 * 178.65413 * 19 18 16 48 48 H 1.09001 * 109.58174 * 174.42265 * 20 19 18 49 49 H 1.09000 * 109.58082 * 294.84149 * 20 19 18 50 50 H 0.96999 * 120.00020 * 180.02562 * 25 24 22 51 51 H 1.09009 * 109.58563 * 293.81960 * 30 21 20 52 52 H 1.09001 * 109.58924 * 173.39488 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8575 1.1611 2.4118 7 6 2.6392 -0.7154 3.5645 8 6 2.7700 -0.0118 4.7622 9 6 3.2307 -0.6734 5.8851 10 6 3.5487 -2.0266 5.7745 11 7 4.0161 -2.7322 6.8780 12 6 4.1775 -2.0538 8.1664 13 6 4.3481 -4.1534 6.7517 14 6 3.3923 -2.6639 4.5438 15 7 2.9469 -2.0059 3.4983 16 6 2.0400 -0.7212 -1.2492 17 1 1.6783 -1.7495 -1.2493 18 6 1.5303 -0.0004 -2.4992 19 6 2.0127 -0.7399 -3.7492 20 6 3.5443 -0.7370 -3.7801 21 7 4.0439 -1.2971 -2.5169 22 6 4.9328 -2.3388 -2.5189 23 1 4.9619 -3.0255 -1.6858 24 6 5.7965 -2.5121 -3.5917 25 7 6.0121 -1.5205 -4.4299 26 14 6.6529 -4.1527 -3.8457 27 1 5.6357 -5.2191 -4.0282 28 1 7.5148 -4.0796 -5.0528 29 1 7.4887 -4.4639 -2.6582 30 6 3.5719 -0.7182 -1.2518 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6318 1.1527 35 1 2.5149 1.0365 4.8114 36 1 3.3416 -0.1545 6.8258 37 1 3.2148 -1.6612 8.4935 38 1 4.5515 -2.7623 8.9056 39 1 4.8869 -1.2332 8.0587 40 1 5.3957 -4.2582 6.4698 41 1 4.1768 -4.6526 7.7054 42 1 3.7187 -4.6069 5.9860 43 1 3.6370 -3.7116 4.4505 44 1 0.4405 0.0204 -2.4874 45 1 1.9128 1.0203 -2.5111 46 1 1.6513 -1.7680 -3.7257 47 1 1.6294 -0.2397 -4.6385 48 1 3.8941 -1.3461 -4.6136 49 1 3.9054 0.2850 -3.8948 50 1 6.6154 -1.6417 -5.1797 51 1 3.9354 0.3054 -1.1603 52 1 3.9400 -1.3148 -0.4171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025631772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:18 Heat of formation + Delta-G solvation = 3.930659 kcal Electronic energy + Delta-G solvation = -30722.206607 eV Core-core repulsion = 26721.248935 eV Total energy + Delta-G solvation = -4000.957672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.68465 -40.56683 -39.32468 -37.71630 -36.68316 -34.68725 -33.36657 -32.67419 -32.21524 -31.26250 -29.84365 -29.28888 -27.20216 -26.74117 -24.94428 -24.29426 -23.61967 -23.20988 -21.92807 -21.39833 -20.70440 -19.11327 -18.61861 -18.13911 -17.65092 -16.88776 -16.77324 -16.33777 -16.08464 -15.91579 -15.81684 -15.42518 -15.23289 -15.13763 -14.95279 -14.65351 -14.38350 -14.23935 -14.07160 -13.97096 -13.78421 -13.56123 -13.44697 -13.23319 -13.05964 -13.00690 -12.74403 -12.63640 -12.57917 -12.29559 -12.20682 -11.96756 -11.76084 -11.50453 -11.41762 -11.34290 -11.15296 -11.01732 -10.63749 -10.51848 -10.49992 -10.02297 -8.67129 -8.45448 -7.85956 -5.31749 -0.15255 0.30687 1.46410 1.49336 1.56248 1.80770 2.02095 2.24093 2.51782 2.95478 3.27543 3.30447 3.56024 3.74948 3.76829 3.94327 4.00527 4.04162 4.08303 4.11249 4.30168 4.36639 4.45117 4.46133 4.50872 4.52664 4.65036 4.72048 4.75527 4.78440 4.87135 4.88086 4.88916 4.89886 4.94818 4.97888 5.04070 5.09933 5.14088 5.26518 5.28055 5.35555 5.40881 5.47811 5.55234 5.61300 5.68325 5.79559 6.09123 6.19260 6.39388 6.52142 6.90883 7.15696 7.25848 7.86870 8.39320 9.20072 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.002851 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.477141 B = 9817.563272 C =12090.513998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.152 3.848 3 H 0.067 0.933 4 N -0.700 5.700 5 C 0.574 3.426 6 O -0.580 6.580 7 C -0.022 4.022 8 C -0.060 4.060 9 C -0.170 4.170 10 C 0.194 3.806 11 N -0.619 5.619 12 C 0.082 3.918 13 C 0.077 3.923 14 C 0.018 3.982 15 N -0.432 5.432 16 C -0.093 4.093 17 H 0.075 0.925 18 C -0.097 4.097 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.608 5.608 22 C -0.263 4.263 23 H 0.065 0.935 24 C -0.052 4.052 25 N -0.937 5.937 26 Si 0.969 3.031 27 H -0.275 1.275 28 H -0.294 1.294 29 H -0.276 1.276 30 C 0.158 3.842 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.411 0.589 35 H 0.146 0.854 36 H 0.165 0.835 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.178 0.822 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.053 0.947 49 H -0.010 1.010 50 H 0.250 0.750 51 H -0.005 1.005 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.168 -3.509 25.493 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.048 3.952 3 H 0.085 0.915 4 N -0.349 5.349 5 C 0.361 3.639 6 O -0.460 6.460 7 C -0.160 4.160 8 C -0.082 4.082 9 C -0.199 4.199 10 C 0.084 3.916 11 N -0.326 5.326 12 C -0.061 4.061 13 C -0.065 4.065 14 C -0.150 4.150 15 N -0.142 5.142 16 C -0.114 4.114 17 H 0.094 0.906 18 C -0.135 4.135 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.331 5.331 22 C -0.393 4.393 23 H 0.083 0.917 24 C -0.247 4.247 25 N -0.583 5.583 26 Si 0.797 3.203 27 H -0.201 1.201 28 H -0.220 1.220 29 H -0.202 1.202 30 C 0.032 3.968 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.248 0.752 35 H 0.163 0.837 36 H 0.183 0.817 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.195 0.805 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.008 0.992 50 H 0.059 0.941 51 H 0.013 0.987 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.294 -3.203 24.749 26.630 hybrid contribution 1.257 -0.465 0.185 1.353 sum -8.037 -3.668 24.934 26.452 Atomic orbital electron populations 1.22120 0.93392 1.02791 1.02611 1.20963 0.95133 0.96129 0.83014 0.91494 1.45924 1.65375 1.14772 1.08879 1.18096 0.76849 0.85646 0.83315 1.90710 1.53250 1.16468 1.85590 1.20612 1.09571 0.91341 0.94524 1.21924 0.93659 1.01350 0.91249 1.21257 1.05555 0.92884 1.00241 1.19188 0.91140 0.92192 0.89060 1.46615 1.67582 1.10503 1.07891 1.21961 1.02096 0.98817 0.83181 1.22029 1.01114 0.78872 1.04446 1.22766 1.03907 1.01253 0.87041 1.67270 1.07030 1.07926 1.31985 1.21727 0.95924 0.99877 0.93825 0.90626 1.21448 1.00970 0.98155 0.92899 1.22006 0.96599 1.00177 0.98079 1.20661 0.91026 0.94739 0.88898 1.44308 1.49818 1.38018 1.00976 1.19485 1.11423 1.02855 1.05562 0.91700 1.25820 0.98375 1.00702 0.99844 1.70204 1.39058 1.31295 1.17716 0.85323 0.78051 0.80013 0.76961 1.20114 1.22017 1.20180 1.20912 0.92978 0.94611 0.88321 0.93218 0.89679 0.91508 0.75211 0.83670 0.81713 0.91618 0.88145 0.92074 0.92288 0.88632 0.90655 0.80482 0.89240 0.93021 0.92681 0.90968 0.92814 0.99177 0.94132 0.98666 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.13 71.98 0.66 -3.22 16 2 C 0.15 4.80 2.16 44.99 0.10 4.90 16 3 H 0.07 2.38 7.58 -2.39 -0.02 2.37 16 4 N -0.70 -22.45 4.47 -445.40 -1.99 -24.44 16 5 C 0.57 19.48 7.76 86.79 0.67 20.16 16 6 O -0.58 -22.31 15.97 -3.91 -0.06 -22.38 16 7 C -0.02 -0.66 6.74 41.85 0.28 -0.38 16 8 C -0.06 -1.46 9.62 22.58 0.22 -1.24 16 9 C -0.17 -3.05 9.40 22.56 0.21 -2.84 16 10 C 0.19 3.40 6.57 38.58 0.25 3.66 16 11 N -0.62 -6.87 3.39 -746.79 -2.53 -9.40 16 12 C 0.08 0.46 9.42 127.77 1.20 1.66 16 13 C 0.08 0.52 10.16 127.77 1.30 1.82 16 14 C 0.02 0.39 10.37 85.07 0.88 1.27 16 15 N -0.43 -11.95 9.52 -184.38 -1.76 -13.71 16 16 C -0.09 -3.23 1.97 -10.72 -0.02 -3.25 16 17 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 18 C -0.10 -3.16 4.85 30.62 0.15 -3.01 16 19 C -0.13 -4.91 6.08 30.67 0.19 -4.72 16 20 C 0.17 8.67 5.31 86.36 0.46 9.13 16 21 N -0.61 -32.03 2.99 -699.09 -2.09 -34.13 16 22 C -0.26 -15.03 9.59 84.03 0.81 -14.22 16 23 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 24 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 25 N -0.94 -57.24 11.19 21.65 0.24 -57.00 16 26 Si 0.97 45.88 29.59 68.60 2.03 47.91 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 28 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 30 C 0.16 7.06 5.56 86.36 0.48 7.54 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.89 6.40 -2.38 -0.02 1.88 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.41 12.87 7.74 -92.71 -0.72 12.15 16 35 H 0.15 3.42 7.63 -2.91 -0.02 3.39 16 36 H 0.17 1.92 6.85 -2.91 -0.02 1.90 16 37 H 0.07 0.32 7.97 -2.39 -0.02 0.30 16 38 H 0.10 0.14 7.80 -2.38 -0.02 0.12 16 39 H 0.06 0.36 7.97 -2.39 -0.02 0.34 16 40 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.10 0.22 7.92 -2.39 -0.02 0.21 16 42 H 0.07 0.52 6.20 -2.38 -0.01 0.50 16 43 H 0.18 2.86 6.14 -2.91 -0.02 2.84 16 44 H 0.09 2.30 6.36 -2.38 -0.02 2.29 16 45 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.05 3.03 6.04 -2.39 -0.01 3.02 16 49 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 50 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 51 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 52 H 0.05 2.08 7.45 -2.39 -0.02 2.06 16 Total: -1.00 -75.63 407.57 2.29 -73.33 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.20 Total: 25.15 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 8.25 Total: 14.65 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -8.13 Total: -138.67 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.38 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -75.63 2.29 -73.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025631772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.265 kcal (2) G-P(sol) polarization free energy of solvation -75.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds