Wall clock time and date at job start Wed Apr 1 2020 05:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47019 * 2 1 4 4 N 1.46502 * 109.47084 * 239.99387 * 2 1 3 5 5 C 1.34768 * 120.00021 * 85.00416 * 4 2 1 6 6 O 1.21562 * 120.00285 * 359.97438 * 5 4 2 7 7 C 1.47840 * 120.00112 * 179.97438 * 5 4 2 8 8 C 1.39529 * 119.63660 * 180.02562 * 7 5 4 9 9 C 1.38225 * 119.15982 * 179.97438 * 8 7 5 10 10 C 1.39451 * 118.42808 * 359.97438 * 9 8 7 11 11 N 1.39068 * 120.40427 * 179.97438 * 10 9 8 12 12 C 1.46496 * 119.99718 * 359.97438 * 11 10 9 13 13 C 1.46496 * 120.00167 * 179.97438 * 11 10 9 14 14 C 1.39468 * 119.19398 * 0.02562 * 10 9 8 15 15 N 1.31319 * 120.77856 * 359.73969 * 14 10 9 16 16 C 1.53005 * 109.46544 * 119.99588 * 2 1 3 17 17 H 1.08996 * 109.52681 * 59.92023 * 16 2 1 18 18 C 1.53044 * 109.49829 * 299.83372 * 16 2 1 19 19 C 1.53068 * 109.65672 * 178.75101 * 18 16 2 20 20 C 1.53183 * 109.29754 * 61.15852 * 19 18 16 21 21 N 1.46932 * 108.89292 * 305.57515 * 20 19 18 22 22 C 1.36928 * 120.63263 * 233.55624 * 21 20 19 23 23 H 1.08006 * 120.00005 * 152.61244 * 22 21 20 24 24 C 1.38813 * 120.00031 * 332.61376 * 22 21 20 25 25 N 1.31624 * 119.99744 * 159.35055 * 24 22 21 26 26 Si 1.86794 * 120.00066 * 339.35175 * 24 22 21 27 27 H 1.48497 * 109.47178 * 92.90746 * 26 24 22 28 28 H 1.48508 * 109.47073 * 212.90280 * 26 24 22 29 29 H 1.48498 * 109.47289 * 332.90222 * 26 24 22 30 30 C 1.46933 * 118.73463 * 53.53642 * 21 20 19 31 31 H 1.08999 * 109.47479 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47631 * 300.00770 * 1 2 3 33 33 H 1.09005 * 109.46949 * 60.00532 * 1 2 3 34 34 H 0.96996 * 119.99525 * 265.00341 * 4 2 1 35 35 H 1.08003 * 120.42490 * 359.97438 * 8 7 5 36 36 H 1.07991 * 120.78873 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47176 * 90.00318 * 12 11 10 38 38 H 1.09003 * 109.47069 * 210.00384 * 12 11 10 39 39 H 1.08999 * 109.47531 * 330.00310 * 12 11 10 40 40 H 1.09004 * 109.47528 * 89.99382 * 13 11 10 41 41 H 1.08993 * 109.47353 * 209.99749 * 13 11 10 42 42 H 1.09000 * 109.47026 * 329.99661 * 13 11 10 43 43 H 1.08002 * 119.61274 * 180.02562 * 14 10 9 44 44 H 1.09003 * 109.46379 * 298.71255 * 18 16 2 45 45 H 1.08998 * 109.45459 * 58.67878 * 18 16 2 46 46 H 1.08994 * 109.39123 * 301.27654 * 19 18 16 47 47 H 1.09008 * 109.62179 * 181.17269 * 19 18 16 48 48 H 1.09001 * 109.59178 * 185.71612 * 20 19 18 49 49 H 1.09010 * 109.58838 * 65.43147 * 20 19 18 50 50 H 0.97000 * 119.99778 * 179.97438 * 25 24 22 51 51 H 1.09004 * 109.58657 * 66.18173 * 30 21 20 52 52 H 1.08996 * 109.58153 * 186.46277 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8577 1.1608 -2.4119 7 6 2.6405 -0.7154 -3.5640 8 6 2.7714 -0.0120 -4.7618 9 6 3.2340 -0.6732 -5.8840 10 6 3.5541 -2.0259 -5.7728 11 7 4.0226 -2.7313 -6.8759 12 6 4.1821 -2.0537 -8.1649 13 6 4.3567 -4.1520 -6.7490 14 6 3.3975 -2.6630 -4.5421 15 7 2.9595 -2.0031 -3.4947 16 6 2.0399 -0.7212 1.2494 17 1 1.6758 -1.7486 1.2510 18 6 1.5334 0.0023 2.4993 19 6 2.0157 -0.7342 3.7515 20 6 3.5473 -0.7377 3.7784 21 7 4.0440 -1.3004 2.5153 22 6 4.9298 -2.3445 2.5172 23 1 4.9593 -3.0292 1.6824 24 6 5.7900 -2.5230 3.5920 25 7 6.3390 -3.6998 3.8071 26 14 6.1683 -1.0932 4.7330 27 1 5.2274 -1.1142 5.8816 28 1 7.5617 -1.2137 5.2323 29 1 6.0168 0.1848 3.9921 30 6 3.5718 -0.7215 1.2500 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6319 -1.1524 35 1 2.5145 1.0359 -4.8116 36 1 3.3459 -0.1543 -6.8245 37 1 5.1867 -1.6363 -8.2341 38 1 4.0294 -2.7692 -8.9729 39 1 3.4489 -1.2512 -8.2468 40 1 3.4745 -4.7537 -6.9679 41 1 5.1510 -4.4027 -7.4519 42 1 4.6930 -4.3568 -5.7326 43 1 3.6437 -3.7104 -4.4482 44 1 1.9181 1.0222 2.5095 45 1 0.4437 0.0253 2.4889 46 1 1.6498 -1.7607 3.7310 47 1 1.6373 -0.2304 4.6410 48 1 3.8968 -1.3467 4.6121 49 1 3.9131 0.2828 3.8927 50 1 6.9403 -3.8244 4.5579 51 1 3.9375 0.3011 1.1570 52 1 3.9395 -1.3184 0.4154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025631773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:23 Heat of formation + Delta-G solvation = 8.729398 kcal Electronic energy + Delta-G solvation = -30784.370057 eV Core-core repulsion = 26783.620474 eV Total energy + Delta-G solvation = -4000.749583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.69333 -40.61227 -39.47298 -37.73053 -36.78381 -34.72754 -33.42757 -32.99970 -32.34536 -31.36341 -30.14050 -29.31688 -27.14952 -26.71953 -25.21144 -24.30331 -23.62318 -23.26584 -22.08202 -21.39399 -20.84816 -19.15154 -18.70941 -18.15699 -17.67036 -17.27579 -16.85444 -16.33843 -16.12653 -15.98198 -15.78210 -15.56513 -15.25502 -15.24140 -15.07837 -14.81137 -14.41251 -14.35235 -14.22415 -14.05246 -13.88915 -13.67226 -13.49566 -13.39140 -13.25198 -13.02564 -12.79144 -12.63941 -12.60082 -12.51207 -12.16694 -11.89778 -11.65435 -11.52822 -11.44384 -11.37982 -11.25014 -11.09836 -10.66514 -10.63053 -10.49885 -10.02633 -8.91817 -8.44875 -8.16813 -5.47677 -0.15138 0.30318 1.27832 1.39560 1.48968 1.80353 2.01559 2.23816 2.40889 2.95342 3.04949 3.28518 3.31847 3.73144 3.74277 3.80516 3.95587 4.01398 4.06792 4.11657 4.22269 4.27966 4.36623 4.43615 4.44282 4.50351 4.54292 4.64823 4.71298 4.72511 4.75800 4.79059 4.85343 4.88570 4.90707 4.96744 4.98066 5.01020 5.08375 5.11215 5.19772 5.21395 5.27669 5.40504 5.43144 5.54629 5.63187 5.86761 6.07975 6.12385 6.19427 6.50957 6.90202 6.92166 7.25196 7.62687 8.03749 9.03231 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.002739 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.915463 B =10221.574570 C =11964.735875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 H 0.074 0.926 4 N -0.702 5.702 5 C 0.575 3.425 6 O -0.578 6.578 7 C -0.024 4.024 8 C -0.059 4.059 9 C -0.172 4.172 10 C 0.195 3.805 11 N -0.619 5.619 12 C 0.079 3.921 13 C 0.078 3.922 14 C 0.016 3.984 15 N -0.433 5.433 16 C -0.097 4.097 17 H 0.072 0.928 18 C -0.099 4.099 19 C -0.126 4.126 20 C 0.115 3.885 21 N -0.619 5.619 22 C -0.245 4.245 23 H 0.051 0.949 24 C -0.034 4.034 25 N -0.956 5.956 26 Si 0.946 3.054 27 H -0.271 1.271 28 H -0.311 1.311 29 H -0.268 1.268 30 C 0.157 3.843 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.411 0.589 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.175 0.825 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.056 0.944 47 H 0.085 0.915 48 H 0.048 0.952 49 H 0.028 0.972 50 H 0.261 0.739 51 H 0.018 0.982 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.708 4.107 -23.763 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.047 3.953 3 H 0.092 0.908 4 N -0.352 5.352 5 C 0.362 3.638 6 O -0.458 6.458 7 C -0.162 4.162 8 C -0.080 4.080 9 C -0.201 4.201 10 C 0.085 3.915 11 N -0.326 5.326 12 C -0.063 4.063 13 C -0.064 4.064 14 C -0.152 4.152 15 N -0.143 5.143 16 C -0.118 4.118 17 H 0.090 0.910 18 C -0.137 4.137 19 C -0.165 4.165 20 C -0.010 4.010 21 N -0.343 5.343 22 C -0.375 4.375 23 H 0.069 0.931 24 C -0.229 4.229 25 N -0.603 5.603 26 Si 0.775 3.225 27 H -0.198 1.198 28 H -0.240 1.240 29 H -0.193 1.193 30 C 0.032 3.968 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.247 0.753 35 H 0.165 0.835 36 H 0.186 0.814 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.192 0.808 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.075 0.925 47 H 0.104 0.896 48 H 0.066 0.934 49 H 0.046 0.954 50 H 0.070 0.930 51 H 0.036 0.964 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.835 4.335 -23.068 25.852 hybrid contribution 1.151 0.121 0.010 1.157 sum -9.684 4.456 -23.057 25.402 Atomic orbital electron populations 1.22128 0.93458 1.02673 1.02748 1.20988 0.95128 0.96331 0.82808 0.90787 1.45961 1.65416 1.14793 1.09004 1.18048 0.76828 0.85634 0.83240 1.90708 1.53212 1.16324 1.85551 1.20656 1.09530 0.91333 0.94704 1.21933 0.93552 1.01355 0.91208 1.21316 1.05609 0.92890 1.00326 1.19201 0.91040 0.92265 0.88975 1.46606 1.67534 1.10557 1.07906 1.21987 1.02206 0.98877 0.83194 1.21986 1.01722 0.78925 1.03795 1.22733 1.04144 1.01296 0.87047 1.67275 1.06967 1.08045 1.32029 1.21751 0.95706 1.00030 0.94268 0.90960 1.21483 1.01481 0.98502 0.92193 1.21917 0.94674 1.00954 0.98979 1.21455 0.95305 0.96044 0.88177 1.44476 1.50188 1.38066 1.01592 1.18860 1.11474 1.01792 1.05389 0.93110 1.25865 0.97992 0.98628 1.00420 1.69963 1.35420 1.23056 1.31827 0.85918 0.75691 0.81501 0.79342 1.19753 1.24030 1.19265 1.20982 0.93101 0.95469 0.87262 0.91840 0.89374 0.93239 0.75320 0.83468 0.81419 0.92154 0.88989 0.90384 0.91659 0.88986 0.91064 0.80782 0.91814 0.88870 0.92517 0.89620 0.93402 0.95418 0.92976 0.96431 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.14 71.98 0.66 -2.96 16 2 C 0.15 4.42 2.16 44.99 0.10 4.52 16 3 H 0.07 2.37 7.58 -2.39 -0.02 2.35 16 4 N -0.70 -21.71 4.46 -445.40 -1.99 -23.70 16 5 C 0.58 18.88 7.76 86.79 0.67 19.55 16 6 O -0.58 -21.24 15.97 -3.91 -0.06 -21.30 16 7 C -0.02 -0.70 6.74 41.85 0.28 -0.42 16 8 C -0.06 -1.40 9.62 22.58 0.22 -1.18 16 9 C -0.17 -3.04 9.28 22.56 0.21 -2.83 16 10 C 0.20 3.49 6.57 38.58 0.25 3.74 16 11 N -0.62 -7.21 3.39 -746.81 -2.53 -9.74 16 12 C 0.08 0.47 10.20 127.77 1.30 1.78 16 13 C 0.08 0.61 10.19 127.77 1.30 1.91 16 14 C 0.02 0.34 10.37 85.07 0.88 1.23 16 15 N -0.43 -12.18 9.52 -184.39 -1.76 -13.94 16 16 C -0.10 -3.10 1.98 -10.71 -0.02 -3.12 16 17 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 18 C -0.10 -2.78 4.85 30.63 0.15 -2.63 16 19 C -0.13 -4.16 6.09 30.68 0.19 -3.98 16 20 C 0.11 4.98 4.20 86.36 0.36 5.34 16 21 N -0.62 -30.29 2.77 -699.07 -1.94 -32.22 16 22 C -0.25 -14.41 10.03 84.04 0.84 -13.57 16 23 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 24 C -0.03 -2.07 5.23 84.86 0.44 -1.63 16 25 N -0.96 -61.35 13.97 21.65 0.30 -61.04 16 26 Si 0.95 48.27 24.34 68.60 1.67 49.94 16 27 H -0.27 -12.92 6.62 99.48 0.66 -12.26 16 28 H -0.31 -16.08 7.11 99.48 0.71 -15.38 16 29 H -0.27 -13.34 6.64 99.48 0.66 -12.68 16 30 C 0.16 6.49 5.55 86.36 0.48 6.97 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.74 6.41 -2.39 -0.02 1.72 16 33 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.41 12.75 7.74 -92.71 -0.72 12.03 16 35 H 0.15 3.32 7.63 -2.91 -0.02 3.30 16 36 H 0.17 1.84 6.25 -2.92 -0.02 1.82 16 37 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.09 0.21 8.07 -2.39 -0.02 0.19 16 39 H 0.08 0.38 6.23 -2.39 -0.01 0.37 16 40 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.09 0.39 8.07 -2.39 -0.02 0.37 16 42 H 0.07 0.65 6.20 -2.39 -0.01 0.63 16 43 H 0.18 3.07 6.15 -2.91 -0.02 3.05 16 44 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.09 2.04 6.37 -2.39 -0.02 2.02 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 48 H 0.05 2.29 4.49 -2.39 -0.01 2.28 16 49 H 0.03 1.18 7.07 -2.38 -0.02 1.17 16 50 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 51 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 52 H 0.05 2.05 7.44 -2.39 -0.02 2.04 16 Total: -1.00 -77.58 400.10 2.14 -75.45 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.12 Total: 23.85 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 8.32 Total: 12.72 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -7.91 Total: -140.65 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.67 Total: 49.94 kcal Total: -77.58 2.14 -75.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025631773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.177 kcal (2) G-P(sol) polarization free energy of solvation -77.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds