Wall clock time and date at job start Wed Apr 1 2020 05:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47089 * 2 1 4 4 N 1.46511 * 109.46895 * 240.00426 * 2 1 3 5 5 C 1.34777 * 119.99595 * 85.00069 * 4 2 1 6 6 O 1.21594 * 120.00401 * 359.97438 * 5 4 2 7 7 C 1.47432 * 119.99225 * 179.97438 * 5 4 2 8 8 C 1.41281 * 126.41774 * 359.69002 * 7 5 4 9 9 N 1.30457 * 108.02478 * 179.85403 * 8 7 5 10 10 N 1.39931 * 108.89259 * 0.40640 * 9 8 7 11 11 C 1.46495 * 125.75357 * 179.73717 * 10 9 8 12 12 C 1.34259 * 108.49360 * 359.73692 * 10 9 8 13 13 C 1.50697 * 126.29108 * 179.97438 * 12 10 9 14 14 C 1.53001 * 117.50081 * 313.45014 * 13 12 10 15 15 C 1.52999 * 117.50223 * 244.79084 * 13 12 10 16 16 C 1.52993 * 109.47213 * 120.00770 * 2 1 3 17 17 H 1.08995 * 109.49963 * 59.92932 * 16 2 1 18 18 C 1.53039 * 109.49447 * 299.83499 * 16 2 1 19 19 C 1.53081 * 109.66094 * 178.75103 * 18 16 2 20 20 C 1.53189 * 109.29267 * 61.14808 * 19 18 16 21 21 N 1.46919 * 108.89751 * 305.58436 * 20 19 18 22 22 C 1.36947 * 120.62913 * 233.51610 * 21 20 19 23 23 H 1.08001 * 119.99607 * 152.91377 * 22 21 20 24 24 C 1.38805 * 119.99632 * 332.91016 * 22 21 20 25 25 N 1.31612 * 120.00671 * 343.28790 * 24 22 21 26 26 Si 1.86809 * 119.99581 * 163.29010 * 24 22 21 27 27 H 1.48503 * 109.47223 * 89.99904 * 26 24 22 28 28 H 1.48500 * 109.47086 * 210.00166 * 26 24 22 29 29 H 1.48504 * 109.46876 * 329.99942 * 26 24 22 30 30 C 1.46923 * 118.74134 * 53.53669 * 21 20 19 31 31 H 1.08998 * 109.46722 * 299.99616 * 1 2 3 32 32 H 1.09001 * 109.47017 * 59.99541 * 1 2 3 33 33 H 1.08994 * 109.47282 * 179.97438 * 1 2 3 34 34 H 0.96994 * 119.99760 * 264.99860 * 4 2 1 35 35 H 1.08005 * 125.99284 * 359.97438 * 8 7 5 36 36 H 1.09007 * 109.47361 * 264.95404 * 11 10 9 37 37 H 1.09002 * 109.47218 * 24.95434 * 11 10 9 38 38 H 1.08997 * 109.47508 * 144.95418 * 11 10 9 39 39 H 1.09004 * 115.55102 * 99.12282 * 13 12 10 40 40 H 1.09001 * 117.49940 * 359.97438 * 14 13 12 41 41 H 1.09001 * 117.49792 * 145.01807 * 14 13 12 42 42 H 1.09004 * 117.50401 * 214.98621 * 15 13 12 43 43 H 1.08998 * 117.49738 * 359.97438 * 15 13 12 44 44 H 1.08998 * 109.46104 * 298.70433 * 18 16 2 45 45 H 1.09000 * 109.46030 * 58.66397 * 18 16 2 46 46 H 1.09000 * 109.38382 * 301.28051 * 19 18 16 47 47 H 1.08995 * 109.62784 * 181.16996 * 19 18 16 48 48 H 1.09002 * 109.58343 * 185.71805 * 20 19 18 49 49 H 1.09007 * 109.58577 * 65.44418 * 20 19 18 50 50 H 0.96995 * 120.00396 * 179.97438 * 25 24 22 51 51 H 1.09005 * 109.58756 * 66.17790 * 30 21 20 52 52 H 1.09001 * 109.58968 * 186.60817 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.8574 1.1616 -2.4118 7 6 2.6390 -0.7129 -3.5609 8 6 3.0182 -2.0710 -3.6492 9 7 3.3923 -2.3067 -4.8766 10 7 3.2809 -1.1257 -5.6189 11 6 3.6105 -0.9723 -7.0380 12 6 2.8208 -0.1569 -4.8112 13 6 2.5529 1.2747 -5.1983 14 6 3.6273 1.9996 -6.0114 15 6 3.4099 2.3571 -4.5390 16 6 2.0400 -0.7214 1.2491 17 1 1.6760 -1.7487 1.2500 18 6 1.5336 0.0019 2.4991 19 6 2.0160 -0.7348 3.7513 20 6 3.5476 -0.7383 3.7780 21 7 4.0442 -1.3007 2.5148 22 6 4.9308 -2.3444 2.5165 23 1 4.9637 -3.0263 1.6796 24 6 5.7871 -2.5258 3.5938 25 7 5.9897 -1.5437 4.4462 26 14 6.6521 -4.1641 3.8337 27 1 7.9545 -4.1454 3.1205 28 1 6.8842 -4.3938 5.2824 29 1 5.8051 -5.2555 3.2890 30 6 3.5720 -0.7217 1.2497 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6317 -1.1528 35 1 2.9997 -2.7890 -2.8425 36 1 4.6301 -0.5992 -7.1359 37 1 3.5276 -1.9380 -7.5367 38 1 2.9194 -0.2657 -7.4973 39 1 1.5117 1.5173 -5.4109 40 1 4.5282 1.4412 -6.2660 41 1 3.2929 2.7193 -6.7586 42 1 2.9327 3.3119 -4.3180 43 1 4.1673 2.0338 -3.8249 44 1 1.9183 1.0217 2.5095 45 1 0.4439 0.0251 2.4888 46 1 1.6501 -1.7614 3.7306 47 1 1.6377 -0.2312 4.6409 48 1 3.8971 -1.3474 4.6116 49 1 3.9134 0.2821 3.8925 50 1 6.5877 -1.6707 5.1992 51 1 3.9377 0.3009 1.1568 52 1 3.9375 -1.3200 0.4150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025636796.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:31 Heat of formation + Delta-G solvation = 60.082602 kcal Electronic energy + Delta-G solvation = -31376.985223 eV Core-core repulsion = 27378.462482 eV Total energy + Delta-G solvation = -3998.522741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -42.55863 -40.58946 -39.16948 -37.98538 -36.54922 -34.67346 -34.25554 -32.55138 -32.10188 -31.12005 -29.84159 -28.01924 -27.08342 -25.25025 -24.36160 -23.60194 -23.51347 -23.03675 -21.99254 -21.18730 -20.82382 -20.16100 -18.74103 -18.47546 -17.28185 -16.98557 -16.75683 -16.55930 -16.00186 -15.79632 -15.67725 -15.43092 -15.26486 -15.01717 -14.91541 -14.70872 -14.53393 -14.08088 -13.97429 -13.69277 -13.54169 -13.45592 -13.18658 -13.02634 -12.97534 -12.75882 -12.54005 -12.40821 -12.24514 -12.23467 -12.16176 -11.94313 -11.72516 -11.57082 -11.46273 -11.21893 -11.19751 -11.05282 -10.67532 -10.51069 -10.39137 -9.99254 -9.56186 -8.65846 -7.84652 -5.30019 0.48298 1.14667 1.37311 1.47095 1.48376 1.58106 2.39494 2.52250 2.54131 2.76393 3.29550 3.37292 3.50550 3.60591 3.90344 3.94214 3.97865 4.06367 4.08078 4.11438 4.21550 4.26966 4.37155 4.40169 4.49660 4.53077 4.57231 4.62420 4.69281 4.75227 4.81113 4.82913 4.91231 4.95261 4.98999 5.00507 5.09882 5.11168 5.16148 5.21364 5.29985 5.32211 5.37825 5.39179 5.52517 5.58853 5.67080 5.73966 5.82329 5.85300 6.40718 6.48791 6.75077 7.16989 7.43506 7.88940 8.40426 9.21268 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011617 B = 0.002939 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.744088 B = 9523.591205 C =10864.165349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 H 0.065 0.935 4 N -0.714 5.714 5 C 0.593 3.407 6 O -0.570 6.570 7 C -0.313 4.313 8 C 0.081 3.919 9 N -0.321 5.321 10 N -0.356 5.356 11 C 0.085 3.915 12 C 0.181 3.819 13 C -0.106 4.106 14 C -0.152 4.152 15 C -0.144 4.144 16 C -0.093 4.093 17 H 0.078 0.922 18 C -0.097 4.097 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.609 5.609 22 C -0.259 4.259 23 H 0.070 0.930 24 C -0.054 4.054 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.267 1.267 30 C 0.157 3.843 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.405 0.595 35 H 0.208 0.792 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.054 0.946 49 H -0.012 1.012 50 H 0.248 0.752 51 H -0.005 1.005 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 3.999 -22.281 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.083 0.917 4 N -0.364 5.364 5 C 0.381 3.619 6 O -0.451 6.451 7 C -0.327 4.327 8 C -0.106 4.106 9 N -0.140 5.140 10 N -0.135 5.135 11 C -0.055 4.055 12 C 0.047 3.953 13 C -0.125 4.125 14 C -0.189 4.189 15 C -0.182 4.182 16 C -0.114 4.114 17 H 0.096 0.904 18 C -0.135 4.135 19 C -0.169 4.169 20 C 0.046 3.954 21 N -0.332 5.332 22 C -0.389 4.389 23 H 0.087 0.913 24 C -0.249 4.249 25 N -0.584 5.584 26 Si 0.794 3.206 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.192 1.192 30 C 0.031 3.969 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.240 0.760 35 H 0.224 0.776 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.149 0.851 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.006 0.994 50 H 0.058 0.942 51 H 0.013 0.987 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.857 3.908 -23.182 25.895 hybrid contribution 0.891 -0.642 1.382 1.765 sum -9.967 3.266 -21.800 24.192 Atomic orbital electron populations 1.22112 0.93802 1.02674 1.02329 1.20806 0.94702 0.96023 0.82883 0.91701 1.45803 1.67337 1.14287 1.09012 1.17335 0.76481 0.85650 0.82388 1.90709 1.52563 1.16276 1.85517 1.20101 1.21892 0.95671 0.95086 1.24369 0.95464 0.95365 0.95383 1.77158 1.25828 1.05678 1.05383 1.48662 1.48227 1.05568 1.11003 1.22402 1.03624 1.05805 0.73620 1.20844 0.93334 0.91537 0.89563 1.20470 0.98932 0.85106 1.08037 1.23318 0.98579 1.02382 0.94582 1.22720 1.01130 0.98636 0.95720 1.21729 0.95887 0.99947 0.93813 0.90410 1.21442 1.00869 0.98108 0.93084 1.22008 0.96616 1.00180 0.98073 1.20657 0.90990 0.94664 0.89100 1.44325 1.49964 1.37816 1.01072 1.19547 1.11462 1.02893 1.05034 0.91279 1.25781 0.98646 1.00599 0.99836 1.70195 1.39534 1.31645 1.17033 0.85302 0.78402 0.80393 0.76512 1.21437 1.22006 1.19176 1.20940 0.92964 0.94696 0.88271 0.90241 0.93263 0.91520 0.75951 0.77586 0.88935 0.87945 0.86831 0.84811 0.88326 0.85058 0.87620 0.91269 0.93239 0.89440 0.92676 0.91249 0.92766 0.99407 0.94239 0.98726 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.14 71.98 0.66 -2.83 16 2 C 0.16 4.51 2.16 44.99 0.10 4.61 16 3 H 0.06 2.12 7.58 -2.39 -0.02 2.11 16 4 N -0.71 -19.22 4.47 -445.79 -1.99 -21.21 16 5 C 0.59 17.50 7.78 86.67 0.67 18.17 16 6 O -0.57 -19.30 14.33 -4.01 -0.06 -19.36 16 7 C -0.31 -8.29 6.13 -20.15 -0.12 -8.41 16 8 C 0.08 1.96 11.50 85.65 0.99 2.95 16 9 N -0.32 -8.00 12.50 -56.27 -0.70 -8.71 16 10 N -0.36 -7.28 3.98 -354.32 -1.41 -8.69 16 11 C 0.08 0.87 10.08 127.77 1.29 2.16 16 12 C 0.18 4.16 6.46 42.14 0.27 4.44 16 13 C -0.11 -1.96 4.86 -11.54 -0.06 -2.01 16 14 C -0.15 -1.87 9.24 30.62 0.28 -1.59 16 15 C -0.14 -2.91 8.95 30.62 0.27 -2.64 16 16 C -0.09 -2.96 1.98 -10.72 -0.02 -2.98 16 17 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 18 C -0.10 -3.01 4.85 30.63 0.15 -2.86 16 19 C -0.13 -4.76 6.09 30.68 0.19 -4.57 16 20 C 0.17 8.42 5.31 86.36 0.46 8.88 16 21 N -0.61 -30.81 3.00 -699.10 -2.10 -32.90 16 22 C -0.26 -14.31 9.60 84.03 0.81 -13.50 16 23 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 24 C -0.05 -3.03 4.93 84.86 0.42 -2.61 16 25 N -0.94 -56.45 11.10 21.65 0.24 -56.21 16 26 Si 0.97 45.18 29.59 68.60 2.03 47.21 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 28 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 30 C 0.16 6.55 5.55 86.36 0.48 7.03 16 31 H 0.08 1.64 6.40 -2.39 -0.02 1.62 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.41 9.62 7.37 -92.71 -0.68 8.94 16 35 H 0.21 3.92 7.50 -2.91 -0.02 3.90 16 36 H 0.09 0.70 7.66 -2.38 -0.02 0.69 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 0.63 7.67 -2.39 -0.02 0.61 16 39 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.10 1.12 7.16 -2.39 -0.02 1.11 16 41 H 0.13 0.91 8.14 -2.39 -0.02 0.90 16 42 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.09 2.13 6.36 -2.39 -0.02 2.12 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.05 3.01 5.97 -2.39 -0.01 3.00 16 49 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 50 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 51 H -0.01 -0.24 8.14 -2.38 -0.02 -0.26 16 52 H 0.05 2.11 7.44 -2.39 -0.02 2.10 16 Total: -1.00 -74.31 408.03 3.07 -71.24 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.24 Total: 24.41 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.83 Total: 4.22 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.96 Total: -127.73 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.06 Total: -19.36 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.31 3.07 -71.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025636796.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.323 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds